Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
12:54:55 (473563): wrapper (7.7.26015): starting
12:54:55 (473563): wrapper: running run_atlas (--nthreads 8)
[2025-10-11 12:54:55] Arguments: --nthreads 8
[2025-10-11 12:54:55] Threads: 8
[2025-10-11 12:54:55] Checking for CVMFS
[2025-10-11 12:54:56] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 12:54:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 12:54:57] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 12:54:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 12:54:58] 2.13.2.0 1756961 93254 301692 151590 2 553 32673502 32935936 28426 16776704 0 99264531 99.689 81550317 29814 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-11 12:54:58] CVMFS is ok
[2025-10-11 12:54:58] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 12:54:58] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 12:54:58] Further information can be found at the LHC@home message board.
[2025-10-11 12:54:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 12:54:58] Checking for apptainer binary...
[2025-10-11 12:54:58] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 12:54:58] Running /usr/bin/apptainer --version
[2025-10-11 12:54:59] apptainer version 1.4.3-1.el9
[2025-10-11 12:54:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 12:55:00] c-5-5.aglt2.org
[2025-10-11 12:55:00] apptainer works
[2025-10-11 12:55:00] Set ATHENA_PROC_NUMBER=8
[2025-10-11 12:55:00] Set ATHENA_CORE_NUMBER=8
[2025-10-11 12:55:00] Starting ATLAS job with PandaID=6838066379
[2025-10-11 12:55:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-11 21:58:59]  *** The last 200 lines of the pilot log: ***
[2025-10-11 21:59:00] 2025-10-12 01:58:18,640 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 21:59:00] 2025-10-12 01:58:19,756 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-11 21:59:00] 2025-10-12 01:58:19,804 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2600.1554250000004
[2025-10-11 21:59:00] 2025-10-12 01:58:19,868 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6838066379/memory_monitor_summary.json (trf name=prmon)
[2025-10-11 21:59:00] 2025-10-12 01:58:19,920 | INFO     | extracted standard info from prmon json
[2025-10-11 21:59:00] 2025-10-12 01:58:19,921 | INFO     | extracted standard memory fields from prmon json
[2025-10-11 21:59:00] 2025-10-12 01:58:19,921 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-11 21:59:00] 2025-10-12 01:58:19,928 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-11 21:59:00] 2025-10-12 01:58:19,929 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-11 21:59:00] 2025-10-12 01:58:20,169 | INFO     | fitting pss+swap vs Time
[2025-10-11 21:59:00] 2025-10-12 01:58:20,170 | INFO     | sum of square deviations: 45900977096.427315
[2025-10-11 21:59:00] 2025-10-12 01:58:20,209 | INFO     | sum of deviations: 45817060342.998215
[2025-10-11 21:59:00] 2025-10-12 01:58:20,209 | INFO     | mean x: 1760218094.395085
[2025-10-11 21:59:00] 2025-10-12 01:58:20,277 | INFO     | mean y: 2150849.153119093
[2025-10-11 21:59:00] 2025-10-12 01:58:20,278 | INFO     | -- intersect: -1754849192.0075328
[2025-10-11 21:59:00] 2025-10-12 01:58:20,278 | INFO     | intersect: -1754849192.0075328
[2025-10-11 21:59:00] 2025-10-12 01:58:20,279 | INFO     | chi2: 3.18298669686771
[2025-10-11 21:59:00] 2025-10-12 01:58:20,279 | INFO     | sum of square deviations: 44611792415.22892
[2025-10-11 21:59:00] 2025-10-12 01:58:20,311 | INFO     | sum of deviations: 81259766137.64113
[2025-10-11 21:59:00] 2025-10-12 01:58:20,311 | INFO     | mean x: 1760217941.90458
[2025-10-11 21:59:00] 2025-10-12 01:58:20,311 | INFO     | mean y: 2155013.2328244275
[2025-10-11 21:59:00] 2025-10-12 01:58:20,311 | INFO     | -- intersect: -3204057751.749445
[2025-10-11 21:59:00] 2025-10-12 01:58:20,311 | INFO     | intersect: -3204057751.749445
[2025-10-11 21:59:00] 2025-10-12 01:58:20,312 | INFO     | chi2: 2.478901300650637
[2025-10-11 21:59:00] 2025-10-12 01:58:20,312 | INFO     | current chi2=2.478901300650637 (change=22.120274549370382 %)
[2025-10-11 21:59:00] 2025-10-12 01:58:20,313 | INFO     | right removable region: 523
[2025-10-11 21:59:00] 2025-10-12 01:58:20,313 | INFO     | sum of square deviations: 44611406891.60306
[2025-10-11 21:59:00] 2025-10-12 01:58:20,322 | INFO     | sum of deviations: -54248496491.46564
[2025-10-11 21:59:00] 2025-10-12 01:58:20,323 | INFO     | mean x: 1760218246.908397
[2025-10-11 21:59:00] 2025-10-12 01:58:20,323 | INFO     | mean y: 2162654.7194656488
[2025-10-11 21:59:00] 2025-10-12 01:58:20,323 | INFO     | -- intersect: 2142628514.1272159
[2025-10-11 21:59:00] 2025-10-12 01:58:20,323 | INFO     | intersect: 2142628514.1272159
[2025-10-11 21:59:00] 2025-10-12 01:58:20,324 | INFO     | chi2: 1.1219096756196696
[2025-10-11 21:59:00] 2025-10-12 01:58:20,324 | INFO     | current chi2=1.1219096756196696 (change=64.7529260262473 %)
[2025-10-11 21:59:00] 2025-10-12 01:58:20,325 | INFO     | sum of square deviations: 43346209236.589485
[2025-10-11 21:59:00] 2025-10-12 01:58:20,334 | INFO     | sum of deviations: -76868815975.48557
[2025-10-11 21:59:00] 2025-10-12 01:58:20,334 | INFO     | mean x: 1760218399.4219654
[2025-10-11 21:59:00] 2025-10-12 01:58:20,334 | INFO     | mean y: 2165373.358381503
[2025-10-11 21:59:00] 2025-10-12 01:58:20,335 | INFO     | -- intersect: 3123681801.3189635
[2025-10-11 21:59:00] 2025-10-12 01:58:20,335 | INFO     | intersect: 3123681801.3189635
[2025-10-11 21:59:00] 2025-10-12 01:58:20,335 | INFO     | chi2: 0.9973495965314774
[2025-10-11 21:59:00] 2025-10-12 01:58:20,336 | INFO     | current chi2=0.9973495965314774 (change=11.102505112044192 %)
[2025-10-11 21:59:00] 2025-10-12 01:58:20,336 | INFO     | left removable region: 20
[2025-10-11 21:59:00] 2025-10-12 01:58:20,336 | INFO     | sum of square deviations: 39459191858.74348
[2025-10-11 21:59:00] 2025-10-12 01:58:20,343 | INFO     | sum of deviations: -49071201351.640114
[2025-10-11 21:59:00] 2025-10-12 01:58:20,343 | INFO     | mean x: 1760218521.4552684
[2025-10-11 21:59:00] 2025-10-12 01:58:20,343 | INFO     | mean y: 2170947.260437376
[2025-10-11 21:59:00] 2025-10-12 01:58:20,343 | INFO     | -- intersect: 2191167564.282595
[2025-10-11 21:59:00] 2025-10-12 01:58:20,343 | INFO     | intersect: 2191167564.282595
[2025-10-11 21:59:00] 2025-10-12 01:58:20,344 | INFO     | chi2: 0.2287752830811012
[2025-10-11 21:59:00] 2025-10-12 01:58:20,347 | INFO     | -- intersect: 2191167564.282595
[2025-10-11 21:59:00] 2025-10-12 01:58:20,347 | INFO     | current memory leak: -1.24 B/s (using 503 data points, chi2=0.23)
[2025-10-11 21:59:00] 2025-10-12 01:58:20,348 | INFO     | could have reported an average CPU frequency of 2600 MHz (21 samples)
[2025-10-11 21:59:00] 2025-10-12 01:58:20,348 | INFO     | ..............................
[2025-10-11 21:59:00] 2025-10-12 01:58:20,348 | INFO     | . Timing measurements:
[2025-10-11 21:59:00] 2025-10-12 01:58:20,348 | INFO     | . get job = 0 s
[2025-10-11 21:59:00] 2025-10-12 01:58:20,348 | INFO     | . initial setup = 7 s
[2025-10-11 21:59:00] 2025-10-12 01:58:20,348 | INFO     | . payload setup = 57 s
[2025-10-11 21:59:00] 2025-10-12 01:58:20,349 | INFO     | . stage-in = 0 s
[2025-10-11 21:59:00] 2025-10-12 01:58:20,349 | INFO     | . payload execution = 32299 s
[2025-10-11 21:59:00] 2025-10-12 01:58:20,349 | INFO     | . stage-out = 9 s
[2025-10-11 21:59:00] 2025-10-12 01:58:20,349 | INFO     | . log creation = 0 s
[2025-10-11 21:59:00] 2025-10-12 01:58:20,349 | INFO     | ..............................
[2025-10-11 21:59:00] 2025-10-12 01:58:21,898 | INFO     | 
[2025-10-11 21:59:00] 2025-10-12 01:58:21,899 | INFO     | job summary report
[2025-10-11 21:59:00] 2025-10-12 01:58:21,899 | INFO     | --------------------------------------------------
[2025-10-11 21:59:00] 2025-10-12 01:58:21,899 | INFO     | PanDA job id: 6838066379
[2025-10-11 21:59:00] 2025-10-12 01:58:21,899 | INFO     | task id: 46676269
[2025-10-11 21:59:00] 2025-10-12 01:58:21,899 | INFO     | errors: (none)
[2025-10-11 21:59:00] 2025-10-12 01:58:21,899 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-11 21:59:00] 2025-10-12 01:58:21,899 | INFO     | pilot state: finished 
[2025-10-11 21:59:00] 2025-10-12 01:58:21,899 | INFO     | transexitcode: 0
[2025-10-11 21:59:00] 2025-10-12 01:58:21,899 | INFO     | exeerrorcode: 0
[2025-10-11 21:59:00] 2025-10-12 01:58:21,899 | INFO     | exeerrordiag: 
[2025-10-11 21:59:00] 2025-10-12 01:58:21,900 | INFO     | exitcode: 0
[2025-10-11 21:59:00] 2025-10-12 01:58:21,900 | INFO     | exitmsg: OK
[2025-10-11 21:59:00] 2025-10-12 01:58:21,900 | INFO     | cpuconsumptiontime: 49467 s
[2025-10-11 21:59:00] 2025-10-12 01:58:21,900 | INFO     | nevents: 400
[2025-10-11 21:59:00] 2025-10-12 01:58:21,900 | INFO     | neventsw: 0
[2025-10-11 21:59:00] 2025-10-12 01:58:21,900 | INFO     | pid: 489216
[2025-10-11 21:59:00] 2025-10-12 01:58:21,900 | INFO     | pgrp: 489216
[2025-10-11 21:59:00] 2025-10-12 01:58:21,900 | INFO     | corecount: 8
[2025-10-11 21:59:00] 2025-10-12 01:58:21,900 | INFO     | event service: False
[2025-10-11 21:59:00] 2025-10-12 01:58:21,900 | INFO     | sizes: {0: 2348629, 1: 2348884, 2: 2348884, 3: 2348912, 15: 2348940, 26: 2348968, 39: 2349124, 49: 2349414, 50: 2349442, 32362: 2387789, 32372: 2396787, 32375: 239
[2025-10-11 21:59:00] 2025-10-12 01:58:21,901 | INFO     | --------------------------------------------------
[2025-10-11 21:59:00] 2025-10-12 01:58:21,901 | INFO     | 
[2025-10-11 21:59:00] 2025-10-12 01:58:21,901 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-10-11 21:59:00] 2025-10-12 01:58:21,940 | INFO     | PID=478839 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-11 21:59:00] 2025-10-12 01:58:21,941 | INFO     | .. there are 40 such processes running
[2025-10-11 21:59:00] 2025-10-12 01:58:22,010 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-11 21:59:00] 2025-10-12 01:58:22,010 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-11 21:59:00] 2025-10-12 01:58:22,010 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-11 21:59:00] 2025-10-12 01:58:22,010 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-11 21:59:00] 2025-10-12 01:58:22,011 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-11 21:59:00] 2025-10-12 01:58:22,011 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-11 21:59:00] 2025-10-12 01:58:22,011 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-11 21:59:00] 2025-10-12 01:58:22,011 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-11 21:59:00] 2025-10-12 01:58:22,011 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-11 21:59:00] 2025-10-12 01:58:22,011 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-11 21:59:00] 2025-10-12 01:58:22,011 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-11 21:59:00] 2025-10-12 01:58:22,012 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-11 21:59:00] 2025-10-12 01:58:22,012 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-11 21:59:00] 2025-10-12 01:58:22,012 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-11 21:59:00] 2025-10-12 01:58:22,013 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-11 21:59:00] 2025-10-12 01:58:22,013 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-11 21:59:00] 2025-10-12 01:58:22,013 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-11 21:59:00] 2025-10-12 01:58:22,013 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-11 21:59:00] 2025-10-12 01:58:22,013 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-11 21:59:00] 2025-10-12 01:58:22,015 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-11 21:59:00] 2025-10-12 01:58:22,015 | INFO     | job 6838066379 has completed (purged errors)
[2025-10-11 21:59:00] 2025-10-12 01:58:22,015 | INFO     | overall cleanup function is called
[2025-10-11 21:59:00] 2025-10-12 01:58:23,036 | INFO     | --- collectZombieJob: --- 10, [489216]
[2025-10-11 21:59:00] 2025-10-12 01:58:23,037 | INFO     | zombie collector waiting for pid 489216
[2025-10-11 21:59:00] 2025-10-12 01:58:23,037 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-11 21:59:00] 2025-10-12 01:58:23,037 | INFO     | collected zombie processes
[2025-10-11 21:59:00] 2025-10-12 01:58:23,037 | INFO     | will attempt to kill all subprocesses of pid=489216
[2025-10-11 21:59:00] 2025-10-12 01:58:27,350 | INFO     | process IDs to be killed: [489216] (in reverse order)
[2025-10-11 21:59:00] 2025-10-12 01:58:29,195 | WARNING  | found no corresponding commands to process id(s)
[2025-10-11 21:59:00] 2025-10-12 01:58:29,195 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-11 21:59:00] 2025-10-12 01:58:29,362 | INFO     | did not find any defunct processes belonging to 489216
[2025-10-11 21:59:00] 2025-10-12 01:58:29,477 | INFO     | did not find any defunct processes belonging to 489216
[2025-10-11 21:59:00] 2025-10-12 01:58:29,533 | INFO     | ready for new job
[2025-10-11 21:59:00] 2025-10-12 01:58:29,534 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-11 21:59:00] 2025-10-12 01:58:29,536 | INFO     | ***************************************
[2025-10-11 21:59:00] 2025-10-12 01:58:29,537 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-11 21:59:00] 2025-10-12 01:58:29,537 | INFO     | ***************************************
[2025-10-11 21:59:00] 2025-10-12 01:58:29,537 | INFO     | 
[2025-10-11 21:59:00] 2025-10-12 01:58:29,637 | INFO     | architecture information:
[2025-10-11 21:59:00] 2025-10-12 01:58:29,682 | INFO     | executing command: cat /etc/os-release
[2025-10-11 21:59:00] 2025-10-12 01:58:29,810 | INFO     | cat /etc/os-release:
[2025-10-11 21:59:00] NAME="CentOS Linux"
[2025-10-11 21:59:00] VERSION="7 (Core)"
[2025-10-11 21:59:00] ID="centos"
[2025-10-11 21:59:00] ID_LIKE="rhel fedora"
[2025-10-11 21:59:00] VERSION_ID="7"
[2025-10-11 21:59:00] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-11 21:59:00] ANSI_COLOR="0;31"
[2025-10-11 21:59:00] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-11 21:59:00] HOME_URL="https://www.centos.org/"
[2025-10-11 21:59:00] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-11 21:59:00] 
[2025-10-11 21:59:00] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-11 21:59:00] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-11 21:59:00] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-11 21:59:00] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-11 21:59:00] 
[2025-10-11 21:59:00] 2025-10-12 01:58:29,810 | INFO     | ***************************************
[2025-10-11 21:59:00] 2025-10-12 01:58:30,318 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-10-11 21:59:00] 2025-10-12 01:58:30,454 | INFO     | sufficient remaining disk space (75966185472 B)
[2025-10-11 21:59:00] 2025-10-12 01:58:30,454 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-11 21:59:00] 2025-10-12 01:58:30,454 | INFO     | current server update state: UPDATING_FINAL
[2025-10-11 21:59:00] 2025-10-12 01:58:30,454 | INFO     | update_server=False
[2025-10-11 21:59:00] 2025-10-12 01:58:30,455 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-11 21:59:00] 2025-10-12 01:58:30,455 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-11 21:59:00] 2025-10-12 01:58:30,455 | INFO     | aborting loop
[2025-10-11 21:59:00] 2025-10-12 01:58:30,537 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-11 21:59:00] 2025-10-12 01:58:30,858 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-11 21:59:00] 2025-10-12 01:58:30,900 | INFO     | all data control threads have been joined
[2025-10-11 21:59:00] 2025-10-12 01:58:31,199 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-11 21:59:00] 2025-10-12 01:58:31,487 | INFO     | [job] job monitor thread has finished
[2025-10-11 21:59:00] 2025-10-12 01:58:31,488 | INFO     | [job] retrieve thread has finished
[2025-10-11 21:59:00] 2025-10-12 01:58:31,556 | INFO     | all payload control threads have been joined
[2025-10-11 21:59:00] 2025-10-12 01:58:31,635 | INFO     | [data] copytool_in thread has finished
[2025-10-11 21:59:00] 2025-10-12 01:58:31,705 | INFO     | [job] validate thread has finished
[2025-10-11 21:59:00] 2025-10-12 01:58:31,864 | INFO     | [job] queue monitor thread has finished
[2025-10-11 21:59:00] 2025-10-12 01:58:31,905 | INFO     | all job control threads have been joined
[2025-10-11 21:59:00] 2025-10-12 01:58:31,924 | INFO     | [data] control thread has finished
[2025-10-11 21:59:00] 2025-10-12 01:58:31,965 | INFO     | [payload] validate_pre thread has finished
[2025-10-11 21:59:00] 2025-10-12 01:58:32,199 | INFO     | [job] create_data_payload thread has finished
[2025-10-11 21:59:00] 2025-10-12 01:58:32,421 | INFO     | [payload] execute_payloads thread has finished
[2025-10-11 21:59:00] 2025-10-12 01:58:32,422 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-11 21:59:00] 2025-10-12 01:58:32,561 | INFO     | [payload] control thread has finished
[2025-10-11 21:59:00] 2025-10-12 01:58:32,698 | INFO     | [data] copytool_out thread has finished
[2025-10-11 21:59:00] 2025-10-12 01:58:32,821 | INFO     | [payload] validate_post thread has finished
[2025-10-11 21:59:00] 2025-10-12 01:58:32,911 | INFO     | [job] control thread has finished
[2025-10-11 21:59:00] 2025-10-12 01:58:33,044 | INFO     | [payload] failed_post thread has finished
[2025-10-11 21:59:00] 2025-10-12 01:58:35,225 | INFO     | [data] queue_monitor thread has finished
[2025-10-11 21:59:00] 2025-10-12 01:58:38,023 | INFO     | [monitor] cgroup control has ended
[2025-10-11 21:59:00] 2025-10-12 01:58:39,795 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140192253818688)>', '<ExcThread(monitor, started 140191465457408)>']
[2025-10-11 21:59:00] 2025-10-12 01:58:44,821 | INFO     | all workflow threads have been joined
[2025-10-11 21:59:00] 2025-10-12 01:58:44,821 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-11 21:59:00] 2025-10-12 01:58:44,822 | INFO     | traces error code: 0
[2025-10-11 21:59:00] 2025-10-12 01:58:44,822 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-11 21:59:00] 2025-10-12 01:58:57,593 | INFO     | PID=478839 has CPU usage=3.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-11 21:59:00] 2025-10-12 01:58:57,594 | INFO     | .. there are 40 such processes running
[2025-10-11 21:59:00] 2025-10-12 01:58:57,603 | INFO     | found 0 job(s) in 20 queues
[2025-10-11 21:59:00] 2025-10-12 01:58:57,604 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-11 21:59:00] 2025-10-12 01:58:57,604 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-11 21:59:00] 2025-10-12 01:58:57,604 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-11 21:59:00] 2025-10-12 01:58:57,604 | INFO     | [monitor] control thread has ended
[2025-10-11 21:59:00] 2025-10-12 01:58:58,551 [wrapper] ==== pilot stdout END ====
[2025-10-11 21:59:00] 2025-10-12 01:58:58,616 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-11 21:59:00] 2025-10-12 01:58:58,644 [wrapper] pilotpid: 478839
[2025-10-11 21:59:00] 2025-10-12 01:58:58,663 [wrapper] Pilot exit status: 0
[2025-10-11 21:59:00] 2025-10-12 01:58:58,795 [wrapper] pandaids: 6838066379
[2025-10-11 21:59:00] 2025-10-12 01:58:59,016 [wrapper] cleanup supervisor_pilot 1961454 478840
[2025-10-11 21:59:00] 2025-10-12 01:58:59,019 [wrapper] Test setup, not cleaning
[2025-10-11 21:59:00] 2025-10-12 01:58:59,021 [wrapper] apfmon messages muted
[2025-10-11 21:59:00] 2025-10-12 01:58:59,024 [wrapper] ==== wrapper stdout END ====
[2025-10-11 21:59:00] 2025-10-12 01:58:59,026 [wrapper] ==== wrapper stderr END ====
[2025-10-11 21:59:00]  *** Error codes and diagnostics ***
[2025-10-11 21:59:00]     "exeErrorCode": 0,
[2025-10-11 21:59:00]     "exeErrorDiag": "",
[2025-10-11 21:59:00]     "pilotErrorCode": 0,
[2025-10-11 21:59:00]     "pilotErrorDiag": "",
[2025-10-11 21:59:00]  *** Listing of results directory ***
[2025-10-11 21:59:00] total 417040
[2025-10-11 21:59:00] -rw-r--r--. 1 boincer umatlas    557409 Oct 10 23:42 pilot3.tar.gz
[2025-10-11 21:59:00] -rw-r--r--. 1 boincer umatlas      5112 Oct 11 00:13 queuedata.json
[2025-10-11 21:59:00] -rwx------. 1 boincer umatlas     36292 Oct 11 00:13 runpilot2-wrapper.sh
[2025-10-11 21:59:00] -rw-r--r--. 1 boincer umatlas       100 Oct 11 12:54 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-11 21:59:00] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 11 12:54 run_atlas
[2025-10-11 21:59:00] -rw-r--r--. 1 boincer umatlas       105 Oct 11 12:54 job.xml
[2025-10-11 21:59:00] -rw-r--r--. 2 boincer umatlas 220585791 Oct 11 12:54 EVNT.46676267._002049.pool.root.1
[2025-10-11 21:59:00] -rw-r--r--. 2 boincer umatlas     15120 Oct 11 12:54 start_atlas.sh
[2025-10-11 21:59:00] drwxrwx--x. 2 boincer umatlas      4096 Oct 11 12:54 shared
[2025-10-11 21:59:00] -rw-r--r--. 2 boincer umatlas    569681 Oct 11 12:54 input.tar.gz
[2025-10-11 21:59:00] -rw-r--r--. 1 boincer umatlas         0 Oct 11 12:54 boinc_lockfile
[2025-10-11 21:59:00] -rw-r--r--. 1 boincer umatlas      2550 Oct 11 12:55 pandaJob.out
[2025-10-11 21:59:00] -rw-------. 1 boincer umatlas    975512 Oct 11 12:56 agis_schedconf.cvmfs.json
[2025-10-11 21:59:00] drwx------. 5 boincer umatlas      4096 Oct 11 12:56 pilot3
[2025-10-11 21:59:00] -rw-------. 1 boincer umatlas 194051006 Oct 11 21:56 HITS.46676269._050916.pool.root.1
[2025-10-11 21:59:00] -rw-r--r--. 1 boincer umatlas       531 Oct 11 21:56 boinc_task_state.xml
[2025-10-11 21:59:00] -rw-r--r--. 1 boincer umatlas      6658 Oct 11 21:56 init_data.xml
[2025-10-11 21:59:00] -rw-------. 1 boincer umatlas      1040 Oct 11 21:57 memory_monitor_summary.json
[2025-10-11 21:59:00] -rw-------. 1 boincer umatlas   1560580 Oct 11 21:57 agis_ddmendpoints.agis.ALL.json
[2025-10-11 21:59:00] -rw-------. 1 boincer umatlas    650290 Oct 11 21:57 log.46676269._050916.job.log.tgz.1
[2025-10-11 21:59:00] -rw-------. 1 boincer umatlas      7817 Oct 11 21:58 heartbeat.json
[2025-10-11 21:59:00] -rw-------. 1 boincer umatlas        95 Oct 11 21:58 pilot_heartbeat.json
[2025-10-11 21:59:00] -rw-------. 1 boincer umatlas       822 Oct 11 21:58 pilotlog.txt
[2025-10-11 21:59:00] -rw-r--r--. 1 boincer umatlas      8192 Oct 11 21:58 boinc_mmap_file
[2025-10-11 21:59:00] -rw-------. 1 boincer umatlas   3607732 Oct 11 21:58 log.46676269._050916.job.log.1
[2025-10-11 21:59:00] -rw-------. 1 boincer umatlas       357 Oct 11 21:58 output.list
[2025-10-11 21:59:00] -rw-r--r--. 1 boincer umatlas       620 Oct 11 21:58 runtime_log
[2025-10-11 21:59:00] -rw-------. 1 boincer umatlas   4280320 Oct 11 21:58 result.tar.gz
[2025-10-11 21:59:00] -rw-r--r--. 1 boincer umatlas      8689 Oct 11 21:58 runtime_log.err
[2025-10-11 21:59:00] -rw-------. 1 boincer umatlas       657 Oct 11 21:58 PTONDm39fR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmdPfNDmlSGYAo.diag
[2025-10-11 21:59:00] -rw-r--r--. 1 boincer umatlas        28 Oct 11 21:58 wrapper_checkpoint.txt
[2025-10-11 21:59:00] -rw-r--r--. 1 boincer umatlas     21315 Oct 11 21:59 stderr.txt
[2025-10-11 21:59:00] HITS file was successfully produced:
[2025-10-11 21:59:00] -rw-------. 1 boincer umatlas 194051006 Oct 11 21:56 shared/HITS.pool.root.1
[2025-10-11 21:59:00]  *** Contents of shared directory: ***
[2025-10-11 21:59:00] total 409680
[2025-10-11 21:59:00] -rw-r--r--. 2 boincer umatlas 220585791 Oct 11 12:54 ATLAS.root_0
[2025-10-11 21:59:00] -rw-r--r--. 2 boincer umatlas     15120 Oct 11 12:54 start_atlas.sh
[2025-10-11 21:59:00] -rw-r--r--. 2 boincer umatlas    569681 Oct 11 12:54 input.tar.gz
[2025-10-11 21:59:00] -rw-------. 1 boincer umatlas 194051006 Oct 11 21:56 HITS.pool.root.1
[2025-10-11 21:59:00] -rw-------. 1 boincer umatlas   4280320 Oct 11 21:58 result.tar.gz
21:59:01 (473563): run_atlas exited; CPU time 50636.412953
21:59:01 (473563): called boinc_finish(0)

</stderr_txt>
]]>

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