Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
04:57:19 (4119681): wrapper (7.7.26015): starting
04:57:19 (4119681): wrapper: running run_atlas (--nthreads 12)
[2025-10-11 04:57:19] Arguments: --nthreads 12
[2025-10-11 04:57:19] Threads: 12
[2025-10-11 04:57:19] Checking for CVMFS
[2025-10-11 04:57:20] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 04:57:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 04:57:20] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 04:57:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 04:57:21] 2.11.5.0 2589 30024 199972 151583 2 375 34407380 45568000 20707 130560 0 310692473 99.847 144518057 20035 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-10-11 04:57:21] CVMFS is ok
[2025-10-11 04:57:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 04:57:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 04:57:21] Further information can be found at the LHC@home message board.
[2025-10-11 04:57:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 04:57:21] Checking for apptainer binary...
[2025-10-11 04:57:21] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 04:57:21] Running /usr/bin/apptainer --version
[2025-10-11 04:57:21] apptainer version 1.4.1-1.el9
[2025-10-11 04:57:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 04:57:21] wns0055.triumf.lcg
[2025-10-11 04:57:21] apptainer works
[2025-10-11 04:57:21] Set ATHENA_PROC_NUMBER=12
[2025-10-11 04:57:21] Set ATHENA_CORE_NUMBER=12
[2025-10-11 04:57:21] Starting ATLAS job with PandaID=6838293342
[2025-10-11 04:57:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-11 05:02:23]  *** The last 200 lines of the pilot log: ***
[2025-10-11 05:02:23] 2025-10-11 12:01:49,100 | INFO     | could have reported an average CPU frequency of 2554 MHz (4 samples)
[2025-10-11 05:02:23] 2025-10-11 12:01:49,104 | INFO     | ..............................
[2025-10-11 05:02:23] 2025-10-11 12:01:49,104 | INFO     | . Timing measurements:
[2025-10-11 05:02:23] 2025-10-11 12:01:49,104 | INFO     | . get job = 0 s
[2025-10-11 05:02:23] 2025-10-11 12:01:49,104 | INFO     | . initial setup = 3 s
[2025-10-11 05:02:23] 2025-10-11 12:01:49,104 | INFO     | . payload setup = 18 s
[2025-10-11 05:02:23] 2025-10-11 12:01:49,104 | INFO     | . stage-in = 0 s
[2025-10-11 05:02:23] 2025-10-11 12:01:49,104 | INFO     | . payload execution = 40 s
[2025-10-11 05:02:23] 2025-10-11 12:01:49,104 | INFO     | . stage-out = 0 s
[2025-10-11 05:02:23] 2025-10-11 12:01:49,104 | INFO     | . log creation = 0 s
[2025-10-11 05:02:23] 2025-10-11 12:01:49,104 | INFO     | ..............................
[2025-10-11 05:02:23] 2025-10-11 12:01:49,105 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-11 05:02:23] 2025-10-11 12:01:49,105 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6838293342/pilotlog.txt
[2025-10-11 05:02:23] 2025-10-11 12:01:49,131 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-10-11 05:02:23] - Log from pilotlog.txt -
[2025-10-11 05:02:23] 2025-10-11 12:01:49,095 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6838293342/memory_monitor_summary.json (trf name=prmon)
[2025-10-11 05:02:23] 2025-10-11 12:01:49,098 | INFO     | extracted standard info from prmon json
[2025-10-11 05:02:23] 2025-10-11 12:01:49,099 | INFO     | extracted standard memory fields from prmon json
[2025-10-11 05:02:23] 2025-10-11 12:01:49,099 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-11 05:02:23] 2025-10-11 12:01:49,099 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-11 05:02:23] 2025-10-11 12:01:49,099 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-11 05:02:23] 2025-10-11 12:01:49,100 | WARNING  | wrong length of table data, x=[1760183944.0], y=[698.0] (must be same and length>=4)
[2025-10-11 05:02:23] 2025-10-11 12:01:49,100 | INFO     | could have reported an average CPU frequency of 2554 MHz (4 samples)
[2025-10-11 05:02:23] 2025-10-11 12:01:49,104 | INFO     | ..............................
[2025-10-11 05:02:23] 2025-10-11 12:01:49,104 | INFO     | . Timing measurements:
[2025-10-11 05:02:23] 2025-10-11 12:01:49,104 | INFO     | . get job = 0 s
[2025-10-11 05:02:23] 2025-10-11 12:01:49,104 | INFO     | . initial setup = 3 s
[2025-10-11 05:02:23] 2025-10-11 12:01:49,104 | INFO     | . payload setup = 18 s
[2025-10-11 05:02:23] 2025-10-11 12:01:49,104 | INFO     | . stage-in = 0 s
[2025-10-11 05:02:23] 2025-10-11 12:01:49,104 | INFO     | . payload execution = 40 s
[2025-10-11 05:02:23] 2025-10-11 12:01:49,104 | INFO     | . stage-out = 0 s
[2025-10-11 05:02:23] 2025-10-11 12:01:49,104 | INFO     | . log creation = 0 s
[2025-10-11 05:02:23] 2025-10-11 12:01:49,104 | INFO     | ..............................
[2025-10-11 05:02:23] 2025-10-11 12:01:49,105 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-11 05:02:23] 2025-10-11 12:01:49,105 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6838293342/pilotlog.txt
[2025-10-11 05:02:23] 2025-10-11 12:01:49,132 | WARNING  | 
[2025-10-11 05:02:23] [begin log extracts]
[2025-10-11 05:02:23] - Log from pilotlog.txt -
[2025-10-11 05:02:23] 2025-10-11 12:01:49,095 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6838293342/memory_monitor_summary.json (trf name=prmon)
[2025-10-11 05:02:23] 2025-10-11 12:01:49,098 | INFO     | extracted standard info from prmon json
[2025-10-11 05:02:23] 2025-10-11 12:01:49,099 | INFO     | extracted standard memory fields from prmon json
[2025-10-11 05:02:23] 2025-10-11 12:01:49,099 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-11 05:02:23] 2025-10-11 12:01:49,099 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-11 05:02:23] 2025-10-11 12:01:49,099 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-11 05:02:23] 2025-10-11 12:01:49,100 | WARNING  | wrong length of table data, x=[1760183944.0], y=[698.0] (must be same and length>=4)
[2025-10-11 05:02:23] 2025-10-11 12:01:49,100 | INFO     | could have reported an average CPU frequency of 2554 MHz (4 samples)
[2025-10-11 05:02:23] 2025-10-11 12:01:49,104 | INFO     | ..............................
[2025-10-11 05:02:23] 2025-10-11 12:01:49,104 | INFO     | . Timing measurements:
[2025-10-11 05:02:23] 2025-10-11 12:01:49,104 | INFO     | . get job = 0 s
[2025-10-11 05:02:23] 2025-10-11 12:01:49,104 | INFO     | . initial setup = 3 s
[2025-10-11 05:02:23] 2025-10-11 12:01:49,104 | INFO     | . payload setup = 18 s
[2025-10-11 05:02:23] 2025-10-11 12:01:49,104 | INFO     | . stage-in = 0 s
[2025-10-11 05:02:23] 2025-10-11 12:01:49,104 | INFO     | . payload execution = 40 s
[2025-10-11 05:02:23] 2025-10-11 12:01:49,104 | INFO     | . stage-out = 0 s
[2025-10-11 05:02:23] 2025-10-11 12:01:49,104 | INFO     | . log creation = 0 s
[2025-10-11 05:02:23] 2025-10-11 12:01:49,104 | INFO     | ..............................
[2025-10-11 05:02:23] 2025-10-11 12:01:49,105 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-11 05:02:23] 2025-10-11 12:01:49,105 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6838293342/pilotlog.txt
[2025-10-11 05:02:23] [end log extracts]
[2025-10-11 05:02:23] 2025-10-11 12:01:49,133 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-10-11 05:02:23] 2025-10-11 12:01:49,133 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-10-11 05:02:23] 2025-10-11 12:01:49,222 | INFO     | time since job start (236s) is within the limit (172800.0s)
[2025-10-11 05:02:23] 2025-10-11 12:01:49,286 | INFO     | 
[2025-10-11 05:02:23] 2025-10-11 12:01:49,286 | INFO     | job summary report
[2025-10-11 05:02:23] 2025-10-11 12:01:49,287 | INFO     | --------------------------------------------------
[2025-10-11 05:02:23] 2025-10-11 12:01:49,287 | INFO     | PanDA job id: 6838293342
[2025-10-11 05:02:23] 2025-10-11 12:01:49,287 | INFO     | task id: 46676269
[2025-10-11 05:02:23] 2025-10-11 12:01:49,287 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-10-11 04:59:24,748 CRITICAL Transform executor raised TransformValidationExceptio
[2025-10-11 05:02:23] 2025-10-11 12:01:49,287 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-11 05:02:23] 2025-10-11 12:01:49,287 | INFO     | pilot state: failed 
[2025-10-11 05:02:23] 2025-10-11 12:01:49,287 | INFO     | transexitcode: 65
[2025-10-11 05:02:23] 2025-10-11 12:01:49,287 | INFO     | exeerrorcode: 65
[2025-10-11 05:02:23] 2025-10-11 12:01:49,287 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2025-10-11 05:02:23] 2025-10-11 12:01:49,287 | INFO     | exitcode: 65
[2025-10-11 05:02:23] 2025-10-11 12:01:49,287 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2025-10-11 05:02:23] 2025-10-11 12:01:49,287 | INFO     | cpuconsumptiontime: 19 s
[2025-10-11 05:02:23] 2025-10-11 12:01:49,287 | INFO     | nevents: 0
[2025-10-11 05:02:23] 2025-10-11 12:01:49,287 | INFO     | neventsw: 0
[2025-10-11 05:02:23] 2025-10-11 12:01:49,287 | INFO     | pid: 4131510
[2025-10-11 05:02:23] 2025-10-11 12:01:49,287 | INFO     | pgrp: 4131510
[2025-10-11 05:02:23] 2025-10-11 12:01:49,287 | INFO     | corecount: 12
[2025-10-11 05:02:23] 2025-10-11 12:01:49,287 | INFO     | event service: False
[2025-10-11 05:02:23] 2025-10-11 12:01:49,288 | INFO     | sizes: {0: 2348683, 1: 2348882, 2: 2348882, 13: 2348910, 15: 2349228, 23: 2349256, 63: 2372726, 64: 2372702, 65: 2377050, 69: 2377078, 199: 2377244}
[2025-10-11 05:02:23] 2025-10-11 12:01:49,288 | INFO     | --------------------------------------------------
[2025-10-11 05:02:23] 2025-10-11 12:01:49,288 | INFO     | 
[2025-10-11 05:02:23] 2025-10-11 12:01:49,288 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-10-11 05:02:23] 2025-10-11 12:01:49,320 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-11 05:02:23] 2025-10-11 12:01:49,322 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-11 05:02:23] 2025-10-11 12:01:49,323 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-11 05:02:23] 2025-10-11 12:01:49,323 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-11 05:02:23] 2025-10-11 12:01:49,323 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-11 05:02:23] 2025-10-11 12:01:49,323 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-11 05:02:23] 2025-10-11 12:01:49,323 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-11 05:02:23] 2025-10-11 12:01:49,323 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-11 05:02:23] 2025-10-11 12:01:49,323 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-11 05:02:23] 2025-10-11 12:01:49,323 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-11 05:02:23] 2025-10-11 12:01:49,323 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-11 05:02:23] 2025-10-11 12:01:49,323 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-11 05:02:23] 2025-10-11 12:01:49,323 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-11 05:02:23] 2025-10-11 12:01:49,323 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-11 05:02:23] 2025-10-11 12:01:49,323 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-11 05:02:23] 2025-10-11 12:01:49,323 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-11 05:02:23] 2025-10-11 12:01:49,323 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-11 05:02:23] 2025-10-11 12:01:49,323 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-11 05:02:23] 2025-10-11 12:01:49,323 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-11 05:02:23] 2025-10-11 12:01:49,324 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-11 05:02:23] 2025-10-11 12:01:49,324 | INFO     | job 6838293342 has completed (purged errors)
[2025-10-11 05:02:23] 2025-10-11 12:01:49,324 | INFO     | overall cleanup function is called
[2025-10-11 05:02:23] 2025-10-11 12:01:50,343 | INFO     | --- collectZombieJob: --- 10, [4131510]
[2025-10-11 05:02:23] 2025-10-11 12:01:50,343 | INFO     | zombie collector waiting for pid 4131510
[2025-10-11 05:02:23] 2025-10-11 12:01:50,344 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-11 05:02:23] 2025-10-11 12:01:50,344 | INFO     | collected zombie processes
[2025-10-11 05:02:23] 2025-10-11 12:01:50,344 | INFO     | will attempt to kill all subprocesses of pid=4131510
[2025-10-11 05:02:23] 2025-10-11 12:01:50,583 | INFO     | process IDs to be killed: [4131510] (in reverse order)
[2025-10-11 05:02:23] 2025-10-11 12:01:51,039 | WARNING  | found no corresponding commands to process id(s)
[2025-10-11 05:02:23] 2025-10-11 12:01:51,040 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-11 05:02:23] 2025-10-11 12:01:51,057 | INFO     | did not find any defunct processes belonging to 4131510
[2025-10-11 05:02:23] 2025-10-11 12:01:51,065 | INFO     | did not find any defunct processes belonging to 4131510
[2025-10-11 05:02:23] 2025-10-11 12:01:51,065 | INFO     | ready for new job
[2025-10-11 05:02:23] 2025-10-11 12:01:51,065 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-11 05:02:23] 2025-10-11 12:01:51,067 | INFO     | ***************************************
[2025-10-11 05:02:23] 2025-10-11 12:01:51,067 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-11 05:02:23] 2025-10-11 12:01:51,067 | INFO     | ***************************************
[2025-10-11 05:02:23] 2025-10-11 12:01:51,067 | INFO     | 
[2025-10-11 05:02:23] 2025-10-11 12:01:51,069 | INFO     | architecture information:
[2025-10-11 05:02:23] 2025-10-11 12:01:51,069 | INFO     | executing command: cat /etc/os-release
[2025-10-11 05:02:23] 2025-10-11 12:01:51,084 | INFO     | cat /etc/os-release:
[2025-10-11 05:02:23] NAME="CentOS Linux"
[2025-10-11 05:02:23] VERSION="7 (Core)"
[2025-10-11 05:02:23] ID="centos"
[2025-10-11 05:02:23] ID_LIKE="rhel fedora"
[2025-10-11 05:02:23] VERSION_ID="7"
[2025-10-11 05:02:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-11 05:02:23] ANSI_COLOR="0;31"
[2025-10-11 05:02:23] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-11 05:02:23] HOME_URL="https://www.centos.org/"
[2025-10-11 05:02:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-11 05:02:23] 
[2025-10-11 05:02:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-11 05:02:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-11 05:02:23] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-11 05:02:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-11 05:02:23] 
[2025-10-11 05:02:23] 2025-10-11 12:01:51,085 | INFO     | ***************************************
[2025-10-11 05:02:23] 2025-10-11 12:01:51,588 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-10-11 05:02:23] 2025-10-11 12:01:51,653 | INFO     | sufficient remaining disk space (1809489854464 B)
[2025-10-11 05:02:23] 2025-10-11 12:01:51,653 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-11 05:02:23] 2025-10-11 12:01:51,653 | INFO     | current server update state: UPDATING_FINAL
[2025-10-11 05:02:23] 2025-10-11 12:01:51,653 | INFO     | update_server=False
[2025-10-11 05:02:23] 2025-10-11 12:01:51,653 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-11 05:02:23] 2025-10-11 12:01:51,654 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-11 05:02:23] 2025-10-11 12:01:51,658 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-11 05:02:23] 2025-10-11 12:01:52,023 | INFO     | all job control threads have been joined
[2025-10-11 05:02:23] 2025-10-11 12:01:52,140 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-11 05:02:23] 2025-10-11 12:01:52,140 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-11 05:02:23] 2025-10-11 12:01:52,140 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-11 05:02:23] 2025-10-11 12:01:52,140 | INFO     | will abort loop
[2025-10-11 05:02:23] 2025-10-11 12:01:52,271 | INFO     | all data control threads have been joined
[2025-10-11 05:02:23] 2025-10-11 12:01:52,659 | INFO     | [job] retrieve thread has finished
[2025-10-11 05:02:23] 2025-10-11 12:01:52,684 | INFO     | all payload control threads have been joined
[2025-10-11 05:02:23] 2025-10-11 12:01:52,716 | INFO     | [job] validate thread has finished
[2025-10-11 05:02:23] 2025-10-11 12:01:52,745 | INFO     | [monitor] cgroup control has ended
[2025-10-11 05:02:23] 2025-10-11 12:01:52,759 | INFO     | [data] copytool_in thread has finished
[2025-10-11 05:02:23] 2025-10-11 12:01:52,949 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-11 05:02:23] 2025-10-11 12:01:53,029 | INFO     | [job] control thread has finished
[2025-10-11 05:02:23] 2025-10-11 12:01:53,103 | INFO     | [payload] failed_post thread has finished
[2025-10-11 05:02:23] 2025-10-11 12:01:53,132 | INFO     | [job] create_data_payload thread has finished
[2025-10-11 05:02:23] 2025-10-11 12:01:53,146 | INFO     | [job] job monitor thread has finished
[2025-10-11 05:02:23] 2025-10-11 12:01:53,147 | INFO     | [payload] execute_payloads thread has finished
[2025-10-11 05:02:23] 2025-10-11 12:01:53,266 | INFO     | [payload] validate_pre thread has finished
[2025-10-11 05:02:23] 2025-10-11 12:01:53,277 | INFO     | [data] control thread has finished
[2025-10-11 05:02:23] 2025-10-11 12:01:53,669 | INFO     | [data] copytool_out thread has finished
[2025-10-11 05:02:23] 2025-10-11 12:01:53,693 | INFO     | [payload] control thread has finished
[2025-10-11 05:02:23] 2025-10-11 12:01:53,924 | INFO     | [payload] validate_post thread has finished
[2025-10-11 05:02:23] 2025-10-11 12:01:54,307 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-11 05:02:23] 2025-10-11 12:01:55,313 | INFO     | [job] queue monitor thread has finished
[2025-10-11 05:02:23] 2025-10-11 12:01:55,663 | INFO     | [data] queue_monitor thread has finished
[2025-10-11 05:02:23] 2025-10-11 12:01:56,005 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139964962891584)>', '<ExcThread(monitor, started 139964058695424)>']
[2025-10-11 05:02:23] 2025-10-11 12:02:01,031 | INFO     | all workflow threads have been joined
[2025-10-11 05:02:23] 2025-10-11 12:02:01,031 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-11 05:02:23] 2025-10-11 12:02:01,032 | INFO     | traces error code: 0
[2025-10-11 05:02:23] 2025-10-11 12:02:01,032 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-11 05:02:23] 2025-10-11 12:02:23,019 | INFO     | PID=4123466 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-11 05:02:23] 2025-10-11 12:02:23,019 | INFO     | .. there are 28 such processes running
[2025-10-11 05:02:23] 2025-10-11 12:02:23,023 | INFO     | found 0 job(s) in 20 queues
[2025-10-11 05:02:23] 2025-10-11 12:02:23,023 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-11 05:02:23] 2025-10-11 12:02:23,023 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-11 05:02:23] 2025-10-11 12:02:23,023 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-11 05:02:23] 2025-10-11 12:02:23,024 | CRITICAL | thread 'MainThread' is not alive
[2025-10-11 05:02:23] 2025-10-11 12:02:23,024 | INFO     | [monitor] control thread has ended
[2025-10-11 05:02:23] 2025-10-11 12:02:23,329 [wrapper] ==== pilot stdout END ====
[2025-10-11 05:02:23] 2025-10-11 12:02:23,374 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-11 05:02:23] 2025-10-11 12:02:23,376 [wrapper] pilotpid: 4123466
[2025-10-11 05:02:23] 2025-10-11 12:02:23,382 [wrapper] Pilot exit status: 0
[2025-10-11 05:02:23] 2025-10-11 12:02:23,523 [wrapper] pandaids: 6838293342
[2025-10-11 05:02:23] 2025-10-11 12:02:23,568 [wrapper] cleanup supervisor_pilot 4123472 4123467
[2025-10-11 05:02:23] 2025-10-11 12:02:23,570 [wrapper] Test setup, not cleaning
[2025-10-11 05:02:23] 2025-10-11 12:02:23,576 [wrapper] apfmon messages muted
[2025-10-11 05:02:23] 2025-10-11 12:02:23,585 [wrapper] ==== wrapper stdout END ====
[2025-10-11 05:02:23] 2025-10-11 12:02:23,594 [wrapper] ==== wrapper stderr END ====
[2025-10-11 05:02:23]  *** Error codes and diagnostics ***
[2025-10-11 05:02:24]     "exeErrorCode": 65,
[2025-10-11 05:02:24]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2025-10-11 05:02:24]     "pilotErrorCode": 1305,
[2025-10-11 05:02:24]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2025-10-11 05:02:24]  *** Listing of results directory ***
[2025-10-11 05:02:24] total 219556
[2025-10-11 05:02:24] -rw-r--r--. 1 boinc boinc    557409 Oct 11 02:19 pilot3.tar.gz
[2025-10-11 05:02:24] -rwx------. 1 boinc boinc     36292 Oct 11 02:25 runpilot2-wrapper.sh
[2025-10-11 05:02:24] -rw-r--r--. 1 boinc boinc      5112 Oct 11 02:25 queuedata.json
[2025-10-11 05:02:24] -rw-r--r--. 1 boinc boinc       100 Oct 11 04:57 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-11 05:02:24] -rwxr-xr-x. 1 boinc boinc      7986 Oct 11 04:57 run_atlas
[2025-10-11 05:02:24] -rw-r--r--. 1 boinc boinc       105 Oct 11 04:57 job.xml
[2025-10-11 05:02:24] -rw-r--r--. 2 boinc boinc 220694963 Oct 11 04:57 EVNT.46676267._002217.pool.root.1
[2025-10-11 05:02:24] drwxrwx--x. 2 boinc boinc      4096 Oct 11 04:57 shared
[2025-10-11 05:02:24] -rw-r--r--. 2 boinc boinc    569674 Oct 11 04:57 input.tar.gz
[2025-10-11 05:02:24] -rw-r--r--. 1 boinc boinc      6593 Oct 11 04:57 init_data.xml
[2025-10-11 05:02:24] -rw-r--r--. 2 boinc boinc     15120 Oct 11 04:57 start_atlas.sh
[2025-10-11 05:02:24] -rw-r--r--. 1 boinc boinc         0 Oct 11 04:57 boinc_lockfile
[2025-10-11 05:02:24] -rw-r--r--. 1 boinc boinc      2550 Oct 11 04:57 pandaJob.out
[2025-10-11 05:02:24] -rw-------. 1 boinc boinc    975509 Oct 11 04:57 agis_schedconf.cvmfs.json
[2025-10-11 05:02:24] -rw-------. 1 boinc boinc   1560580 Oct 11 04:57 agis_ddmendpoints.agis.ALL.json
[2025-10-11 05:02:24] drwx------. 5 boinc boinc      4096 Oct 11 04:57 pilot3
[2025-10-11 05:02:24] -rw-r--r--. 1 boinc boinc       523 Oct 11 04:59 boinc_task_state.xml
[2025-10-11 05:02:24] -rw-------. 1 boinc boinc       986 Oct 11 04:59 memory_monitor_summary.json
[2025-10-11 05:02:24] -rw-------. 1 boinc boinc     21630 Oct 11 04:59 log.46676269._055290.job.log.tgz.1
[2025-10-11 05:02:24] -rw-------. 1 boinc boinc      8433 Oct 11 05:01 heartbeat.json
[2025-10-11 05:02:24] -rw-r--r--. 1 boinc boinc      8192 Oct 11 05:02 boinc_mmap_file
[2025-10-11 05:02:24] -rw-r--r--. 1 boinc boinc        22 Oct 11 05:02 wrapper_checkpoint.txt
[2025-10-11 05:02:24] -rw-------. 1 boinc boinc        95 Oct 11 05:02 pilot_heartbeat.json
[2025-10-11 05:02:24] -rw-------. 1 boinc boinc       893 Oct 11 05:02 pilotlog.txt
[2025-10-11 05:02:24] -rw-------. 1 boinc boinc     91767 Oct 11 05:02 log.46676269._055290.job.log.1
[2025-10-11 05:02:24] -rw-------. 1 boinc boinc       188 Oct 11 05:02 output.list
[2025-10-11 05:02:24] -rw-r--r--. 1 boinc boinc       620 Oct 11 05:02 runtime_log
[2025-10-11 05:02:24] -rw-------. 1 boinc boinc    133120 Oct 11 05:02 result.tar.gz
[2025-10-11 05:02:24] -rw-r--r--. 1 boinc boinc      8528 Oct 11 05:02 runtime_log.err
[2025-10-11 05:02:24] -rw-------. 1 boinc boinc       644 Oct 11 05:02 9oQODmz1kR8n9Rq4apOajLDm4fhM0noT9bVof3QYDmvcRMDmDVWzxn.diag
[2025-10-11 05:02:24] -rw-r--r--. 1 boinc boinc     21821 Oct 11 05:02 stderr.txt
[2025-10-11 05:02:24] No HITS result produced
[2025-10-11 05:02:24]  *** Contents of shared directory: ***
[2025-10-11 05:02:24] total 216236
[2025-10-11 05:02:24] -rw-r--r--. 2 boinc boinc 220694963 Oct 11 04:57 ATLAS.root_0
[2025-10-11 05:02:24] -rw-r--r--. 2 boinc boinc    569674 Oct 11 04:57 input.tar.gz
[2025-10-11 05:02:24] -rw-r--r--. 2 boinc boinc     15120 Oct 11 04:57 start_atlas.sh
[2025-10-11 05:02:24] -rw-------. 1 boinc boinc    133120 Oct 11 05:02 result.tar.gz
05:02:25 (4119681): run_atlas exited; CPU time 27.278605
05:02:25 (4119681): called boinc_finish(0)

</stderr_txt>
]]>

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