Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
23:42:22 (2701189): wrapper (7.7.26015): starting
23:42:22 (2701189): wrapper: running run_atlas (--nthreads 3)
[2025-10-11 23:42:22] Arguments: --nthreads 3
[2025-10-11 23:42:22] Threads: 3
[2025-10-11 23:42:22] Checking for CVMFS
[2025-10-11 23:42:22] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 23:42:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 23:42:22] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 23:42:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 23:42:23] 2.9.2.0 1718076 3477 69356 151597 3 57 29015041 36864000 0 130560 0 2567649 99.990 113540 1014 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-11 23:42:23] CVMFS is ok
[2025-10-11 23:42:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 23:42:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 23:42:23] Further information can be found at the LHC@home message board.
[2025-10-11 23:42:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 23:42:23] Checking for apptainer binary...
[2025-10-11 23:42:23] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 23:42:23] Running /usr/bin/apptainer --version
[2025-10-11 23:42:23] apptainer version 1.4.1-1.1
[2025-10-11 23:42:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 23:42:23] thA333
[2025-10-11 23:42:23] apptainer works
[2025-10-11 23:42:23] Set ATHENA_PROC_NUMBER=3
[2025-10-11 23:42:23] Set ATHENA_CORE_NUMBER=3
[2025-10-11 23:42:23] Starting ATLAS job with PandaID=6838119141
[2025-10-11 23:42:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 01:13:47]  *** The last 200 lines of the pilot log: ***
[2025-10-12 01:13:47] 2025-10-11 23:13:10,179 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 01:13:47] 2025-10-11 23:13:10,179 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 01:13:47] 2025-10-11 23:13:10,179 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 01:13:47] 2025-10-11 23:13:10,179 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 01:13:47] 2025-10-11 23:13:10,179 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 01:13:47] 2025-10-11 23:13:10,179 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 01:13:47] 2025-10-11 23:13:10,179 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 01:13:47] 2025-10-11 23:13:10,179 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 01:13:47] 2025-10-11 23:13:10,179 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 01:13:47] 2025-10-11 23:13:10,179 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 01:13:47] 2025-10-11 23:13:10,179 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 01:13:47] 2025-10-11 23:13:10,179 | INFO     | job 6838119141 has completed (purged errors)
[2025-10-12 01:13:47] 2025-10-11 23:13:10,180 | INFO     | overall cleanup function is called
[2025-10-12 01:13:47] 2025-10-11 23:13:11,186 | INFO     | --- collectZombieJob: --- 10, [2711368]
[2025-10-12 01:13:47] 2025-10-11 23:13:11,186 | INFO     | zombie collector waiting for pid 2711368
[2025-10-12 01:13:47] 2025-10-11 23:13:11,186 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 01:13:47] 2025-10-11 23:13:11,187 | INFO     | collected zombie processes
[2025-10-12 01:13:47] 2025-10-11 23:13:11,187 | INFO     | will attempt to kill all subprocesses of pid=2711368
[2025-10-12 01:13:47] 2025-10-11 23:13:11,227 | INFO     | process IDs to be killed: [2711368] (in reverse order)
[2025-10-12 01:13:47] 2025-10-11 23:13:11,252 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 01:13:47] 2025-10-11 23:13:11,252 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 01:13:47] 2025-10-11 23:13:11,253 | INFO     | did not find any defunct processes belonging to 2711368
[2025-10-12 01:13:47] 2025-10-11 23:13:11,254 | INFO     | did not find any defunct processes belonging to 2711368
[2025-10-12 01:13:47] 2025-10-11 23:13:11,254 | INFO     | ready for new job
[2025-10-12 01:13:47] 2025-10-11 23:13:11,254 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 01:13:47] 2025-10-11 23:13:11,255 | INFO     | ***************************************
[2025-10-12 01:13:47] 2025-10-11 23:13:11,255 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 01:13:47] 2025-10-11 23:13:11,255 | INFO     | ***************************************
[2025-10-12 01:13:47] 2025-10-11 23:13:11,255 | INFO     | 
[2025-10-12 01:13:47] 2025-10-11 23:13:11,255 | INFO     | architecture information:
[2025-10-12 01:13:47] 2025-10-11 23:13:11,255 | INFO     | executing command: cat /etc/os-release
[2025-10-12 01:13:47] 2025-10-11 23:13:11,265 | INFO     | cat /etc/os-release:
[2025-10-12 01:13:47] NAME="CentOS Linux"
[2025-10-12 01:13:47] VERSION="7 (Core)"
[2025-10-12 01:13:47] ID="centos"
[2025-10-12 01:13:47] ID_LIKE="rhel fedora"
[2025-10-12 01:13:47] VERSION_ID="7"
[2025-10-12 01:13:47] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 01:13:47] ANSI_COLOR="0;31"
[2025-10-12 01:13:47] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 01:13:47] HOME_URL="https://www.centos.org/"
[2025-10-12 01:13:47] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 01:13:47] 
[2025-10-12 01:13:47] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 01:13:47] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 01:13:47] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 01:13:47] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 01:13:47] 
[2025-10-12 01:13:47] 2025-10-11 23:13:11,265 | INFO     | ***************************************
[2025-10-12 01:13:47] 2025-10-11 23:13:11,769 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-12 01:13:47] 2025-10-11 23:13:11,781 | INFO     | sufficient remaining disk space (230720274432 B)
[2025-10-12 01:13:47] 2025-10-11 23:13:11,781 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 01:13:47] 2025-10-11 23:13:11,781 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 01:13:47] 2025-10-11 23:13:11,781 | INFO     | update_server=False
[2025-10-12 01:13:47] 2025-10-11 23:13:11,781 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 01:13:47] 2025-10-11 23:13:11,782 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 01:13:47] 2025-10-11 23:13:11,814 | INFO     | all payload control threads have been joined
[2025-10-12 01:13:47] 2025-10-11 23:13:11,947 | INFO     | all data control threads have been joined
[2025-10-12 01:13:47] 2025-10-11 23:13:12,720 | INFO     | all job control threads have been joined
[2025-10-12 01:13:47] 2025-10-11 23:13:12,771 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 01:13:47] 2025-10-11 23:13:12,771 | INFO     | aborting loop
[2025-10-12 01:13:47] 2025-10-11 23:13:12,787 | INFO     | [job] retrieve thread has finished
[2025-10-12 01:13:47] 2025-10-11 23:13:12,787 | INFO     | [job] queue monitor thread has finished
[2025-10-12 01:13:47] 2025-10-11 23:13:12,820 | INFO     | [payload] control thread has finished
[2025-10-12 01:13:47] 2025-10-11 23:13:12,881 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 01:13:47] 2025-10-11 23:13:12,953 | INFO     | [data] control thread has finished
[2025-10-12 01:13:47] 2025-10-11 23:13:12,967 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 01:13:47] 2025-10-11 23:13:13,042 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 01:13:47] 2025-10-11 23:13:13,087 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 01:13:47] 2025-10-11 23:13:13,202 | INFO     | [data] copytool_in thread has finished
[2025-10-12 01:13:47] 2025-10-11 23:13:13,659 | INFO     | [payload] failed_post thread has finished
[2025-10-12 01:13:47] 2025-10-11 23:13:13,726 | INFO     | [job] control thread has finished
[2025-10-12 01:13:47] 2025-10-11 23:13:13,777 | INFO     | [job] job monitor thread has finished
[2025-10-12 01:13:47] 2025-10-11 23:13:13,872 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 01:13:47] 2025-10-11 23:13:14,243 | INFO     | [job] validate thread has finished
[2025-10-12 01:13:47] 2025-10-11 23:13:14,250 | INFO     | [payload] validate_post thread has finished
[2025-10-12 01:13:47] 2025-10-11 23:13:15,049 | INFO     | [data] copytool_out thread has finished
[2025-10-12 01:13:47] 2025-10-11 23:13:17,879 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 01:13:47] 2025-10-11 23:13:22,435 | INFO     | job.realtimelogging is not enabled
[2025-10-12 01:13:47] 2025-10-11 23:13:23,439 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 01:13:47] 2025-10-11 23:13:41,997 | INFO     | PID=2704920 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 01:13:47] 2025-10-11 23:13:41,997 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 01:13:47] 2025-10-11 23:13:41,997 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 01:13:47] 2025-10-11 23:13:41,997 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 01:13:47] 2025-10-11 23:13:42,090 | INFO     | [monitor] cgroup control has ended
[2025-10-12 01:13:47] 2025-10-11 23:13:42,635 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139701009749824)>', '<ExcThread(monitor, started 139700245358336)>']
[2025-10-12 01:13:47] 2025-10-11 23:13:43,003 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 01:13:47] 2025-10-11 23:13:43,003 | INFO     | [monitor] control thread has ended
[2025-10-12 01:13:47] 2025-10-11 23:13:47,661 | INFO     | all workflow threads have been joined
[2025-10-12 01:13:47] 2025-10-11 23:13:47,661 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 01:13:47] 2025-10-11 23:13:47,662 | INFO     | traces error code: 0
[2025-10-12 01:13:47] 2025-10-11 23:13:47,662 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 01:13:47] 2025-10-11 23:13:47,709 [wrapper] ==== pilot stdout END ====
[2025-10-12 01:13:47] 2025-10-11 23:13:47,712 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 01:13:47] 2025-10-11 23:13:47,715 [wrapper] pilotpid: 2704920
[2025-10-12 01:13:47] 2025-10-11 23:13:47,718 [wrapper] Pilot exit status: 0
[2025-10-12 01:13:47] 2025-10-11 23:13:47,725 [wrapper] pandaids: 6838119141
[2025-10-12 01:13:47] 2025-10-11 23:13:47,741 [wrapper] cleanup supervisor_pilot 2724337 2704921
[2025-10-12 01:13:47] 2025-10-11 23:13:47,744 [wrapper] Test setup, not cleaning
[2025-10-12 01:13:47] 2025-10-11 23:13:47,746 [wrapper] apfmon messages muted
[2025-10-12 01:13:47] 2025-10-11 23:13:47,749 [wrapper] ==== wrapper stdout END ====
[2025-10-12 01:13:47] 2025-10-11 23:13:47,752 [wrapper] ==== wrapper stderr END ====
[2025-10-12 01:13:47]  *** Error codes and diagnostics ***
[2025-10-12 01:13:47]     "exeErrorCode": 0,
[2025-10-12 01:13:47]     "exeErrorDiag": "",
[2025-10-12 01:13:47]     "pilotErrorCode": 0,
[2025-10-12 01:13:47]     "pilotErrorDiag": "",
[2025-10-12 01:13:47]  *** Listing of results directory ***
[2025-10-12 01:13:47] total 409912
[2025-10-12 01:13:47] -rw-r--r-- 1 boinc boinc    557409 Oct 11 08:24 pilot3.tar.gz
[2025-10-12 01:13:47] -rw-r--r-- 1 boinc boinc      5112 Oct 11 08:30 queuedata.json
[2025-10-12 01:13:47] -rwx------ 1 boinc boinc     36292 Oct 11 08:32 runpilot2-wrapper.sh
[2025-10-12 01:13:47] -rw-r--r-- 1 boinc boinc       100 Oct 11 23:42 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 01:13:47] -rwxr-xr-x 1 boinc boinc      7986 Oct 11 23:42 run_atlas
[2025-10-12 01:13:47] -rw-r--r-- 1 boinc boinc       105 Oct 11 23:42 job.xml
[2025-10-12 01:13:47] -rw-r--r-- 2 boinc boinc 220225811 Oct 11 23:42 EVNT.46676267._002111.pool.root.1
[2025-10-12 01:13:47] -rw-r--r-- 2 boinc boinc    569684 Oct 11 23:42 input.tar.gz
[2025-10-12 01:13:47] -rw-r--r-- 2 boinc boinc     15120 Oct 11 23:42 start_atlas.sh
[2025-10-12 01:13:47] drwxrwx--x 2 boinc boinc      4096 Oct 11 23:42 shared
[2025-10-12 01:13:47] -rw-r--r-- 1 boinc boinc         0 Oct 11 23:42 boinc_setup_complete
[2025-10-12 01:13:47] -rw-r--r-- 1 boinc boinc      6197 Oct 11 23:42 init_data.xml
[2025-10-12 01:13:47] -rw-r--r-- 1 boinc boinc         0 Oct 11 23:42 boinc_lockfile
[2025-10-12 01:13:47] -rw-r--r-- 1 boinc boinc      2550 Oct 11 23:42 pandaJob.out
[2025-10-12 01:13:47] -rw------- 1 boinc boinc    975528 Oct 11 23:42 agis_schedconf.cvmfs.json
[2025-10-12 01:13:47] -rw------- 1 boinc boinc   1560580 Oct 11 23:42 agis_ddmendpoints.agis.ALL.json
[2025-10-12 01:13:47] drwx------ 5 boinc boinc      4096 Oct 11 23:42 pilot3
[2025-10-12 01:13:47] -rw------- 1 boinc boinc 193516196 Oct 12 01:12 HITS.46676269._052529.pool.root.1
[2025-10-12 01:13:47] -rw-r--r-- 1 boinc boinc       529 Oct 12 01:12 boinc_task_state.xml
[2025-10-12 01:13:47] -rw------- 1 boinc boinc      1018 Oct 12 01:12 memory_monitor_summary.json
[2025-10-12 01:13:47] -rw------- 1 boinc boinc    261014 Oct 12 01:12 log.46676269._052529.job.log.tgz.1
[2025-10-12 01:13:47] -rw------- 1 boinc boinc        95 Oct 12 01:13 pilot_heartbeat.json
[2025-10-12 01:13:47] -rw------- 1 boinc boinc      7760 Oct 12 01:13 heartbeat.json
[2025-10-12 01:13:47] -rw-r--r-- 1 boinc boinc        27 Oct 12 01:13 wrapper_checkpoint.txt
[2025-10-12 01:13:47] -rw-r--r-- 1 boinc boinc      8192 Oct 12 01:13 boinc_mmap_file
[2025-10-12 01:13:47] -rw------- 1 boinc boinc      4824 Oct 12 01:13 pilotlog.txt
[2025-10-12 01:13:47] -rw------- 1 boinc boinc    793541 Oct 12 01:13 log.46676269._052529.job.log.1
[2025-10-12 01:13:47] -rw------- 1 boinc boinc       357 Oct 12 01:13 output.list
[2025-10-12 01:13:47] -rw-r--r-- 1 boinc boinc       620 Oct 12 01:13 runtime_log
[2025-10-12 01:13:47] -rw------- 1 boinc boinc   1075200 Oct 12 01:13 result.tar.gz
[2025-10-12 01:13:47] -rw-r--r-- 1 boinc boinc      8777 Oct 12 01:13 runtime_log.err
[2025-10-12 01:13:47] -rw------- 1 boinc boinc       658 Oct 12 01:13 r76LDmxKiR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmZbfNDmly3CSo.diag
[2025-10-12 01:13:47] -rw-r--r-- 1 boinc boinc     12028 Oct 12 01:13 stderr.txt
[2025-10-12 01:13:47] HITS file was successfully produced:
[2025-10-12 01:13:47] -rw------- 1 boinc boinc 193516196 Oct 12 01:12 shared/HITS.pool.root.1
[2025-10-12 01:13:47]  *** Contents of shared directory: ***
[2025-10-12 01:13:47] total 405688
[2025-10-12 01:13:47] -rw-r--r-- 2 boinc boinc 220225811 Oct 11 23:42 ATLAS.root_0
[2025-10-12 01:13:47] -rw-r--r-- 2 boinc boinc    569684 Oct 11 23:42 input.tar.gz
[2025-10-12 01:13:47] -rw-r--r-- 2 boinc boinc     15120 Oct 11 23:42 start_atlas.sh
[2025-10-12 01:13:47] -rw------- 1 boinc boinc 193516196 Oct 12 01:12 HITS.pool.root.1
[2025-10-12 01:13:47] -rw------- 1 boinc boinc   1075200 Oct 12 01:13 result.tar.gz
01:13:49 (2701189): run_atlas exited; CPU time 15527.604739
01:13:49 (2701189): called boinc_finish(0)

</stderr_txt>
]]>

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