Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
08:27:39 (28789): wrapper (7.7.26015): starting
08:27:39 (28789): wrapper: running run_atlas (--nthreads 12)
[2025-10-11 08:27:39] Arguments: --nthreads 12
[2025-10-11 08:27:39] Threads: 12
[2025-10-11 08:27:39] Checking for CVMFS
[2025-10-11 08:27:39] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 08:27:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 08:27:40] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 08:27:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 08:27:40] 2.11.2.0 2949 221441 96660 151584 3 59 18013571 20275201 1 130560 1 107013359 99.984 12315801 12050 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-11 08:27:40] CVMFS is ok
[2025-10-11 08:27:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 08:27:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 08:27:40] Further information can be found at the LHC@home message board.
[2025-10-11 08:27:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 08:27:40] Checking for apptainer binary...
[2025-10-11 08:27:40] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 08:27:40] Running /usr/bin/apptainer --version
[2025-10-11 08:27:40] apptainer version 1.3.2-1.el7
[2025-10-11 08:27:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 08:27:41] c-205-13.aglt2.org
[2025-10-11 08:27:41] apptainer works
[2025-10-11 08:27:41] Set ATHENA_PROC_NUMBER=12
[2025-10-11 08:27:41] Set ATHENA_CORE_NUMBER=12
[2025-10-11 08:27:41] Starting ATLAS job with PandaID=6837333401
[2025-10-11 08:27:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-11 09:41:13]  *** The last 200 lines of the pilot log: ***
[2025-10-11 09:41:13]  protocol_id=None
[2025-10-11 09:41:13]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-11 09:41:13]  replicas=None
[2025-10-11 09:41:13]  scope=mc23_13p6TeV
[2025-10-11 09:41:13]  status=None
[2025-10-11 09:41:13]  status_code=0
[2025-10-11 09:41:13]  storage_token=
[2025-10-11 09:41:13]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6837333401/log.46676269._015680.job.log.tgz.1
[2025-10-11 09:41:13]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f4/78/log.46676269._015680.job.log.tgz.1
[2025-10-11 09:41:13]  workdir=None
[2025-10-11 09:41:13] ]
[2025-10-11 09:41:13] 2025-10-11 13:40:35,232 | INFO     | transferring file log.46676269._015680.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6837333401/log.46676269._015680.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-11 09:41:13] 2025-10-11 13:40:35,233 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6837333401/log.46676269._015680.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._015680.job
[2025-10-11 09:41:13] 2025-10-11 13:40:35,254 | INFO     | adding to output.list: log.46676269._015680.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f4/78/log.46676269._015680.job.log.tg
[2025-10-11 09:41:13] 2025-10-11 13:40:35,255 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-11 09:41:13] 2025-10-11 13:40:35,255 | INFO     | summary of transferred files:
[2025-10-11 09:41:13] 2025-10-11 13:40:35,256 | INFO     |  -- lfn=log.46676269._015680.job.log.tgz.1, status_code=0, status=transferred
[2025-10-11 09:41:13] 2025-10-11 13:40:35,256 | INFO     | stage-out finished correctly
[2025-10-11 09:41:13] 2025-10-11 13:40:35,337 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-11 09:41:13] 2025-10-11 13:40:35,416 | INFO     | job 6837333401 has state=finished
[2025-10-11 09:41:13] 2025-10-11 13:40:35,416 | INFO     | preparing for final server update for job 6837333401 in state='finished'
[2025-10-11 09:41:13] 2025-10-11 13:40:35,417 | INFO     | this job has now completed (state=finished)
[2025-10-11 09:41:13] 2025-10-11 13:40:35,417 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-11 09:41:13] 2025-10-11 13:40:35,417 | INFO     | log transfer has been attempted: DONE
[2025-10-11 09:41:13] 2025-10-11 13:40:35,417 | INFO     | job 6837333401 has finished - writing final server update
[2025-10-11 09:41:13] 2025-10-11 13:40:35,417 | INFO     | total number of processed events: 400 (read)
[2025-10-11 09:41:13] 2025-10-11 13:40:35,418 | INFO     | executing command: lscpu
[2025-10-11 09:41:13] 2025-10-11 13:40:35,445 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-11 09:41:13] 2025-10-11 13:40:36,389 | INFO     | time since job start (4360s) is within the limit (172800.0s)
[2025-10-11 09:41:13] 2025-10-11 13:40:38,395 | INFO     | time since job start (4362s) is within the limit (172800.0s)
[2025-10-11 09:41:13] 2025-10-11 13:40:40,400 | INFO     | time since job start (4364s) is within the limit (172800.0s)
[2025-10-11 09:41:13] 2025-10-11 13:40:41,079 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-11 09:41:13] 2025-10-11 13:40:41,083 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1695.8333333333333
[2025-10-11 09:41:13] 2025-10-11 13:40:41,086 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6837333401/memory_monitor_summary.json (trf name=prmon)
[2025-10-11 09:41:13] 2025-10-11 13:40:41,087 | INFO     | extracted standard info from prmon json
[2025-10-11 09:41:13] 2025-10-11 13:40:41,087 | INFO     | extracted standard memory fields from prmon json
[2025-10-11 09:41:13] 2025-10-11 13:40:41,087 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-11 09:41:13] 2025-10-11 13:40:41,088 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-11 09:41:13] 2025-10-11 13:40:41,088 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-11 09:41:13] 2025-10-11 13:40:41,090 | INFO     | fitting pss+swap vs Time
[2025-10-11 09:41:13] 2025-10-11 13:40:41,090 | INFO     | sum of square deviations: 81266640.0
[2025-10-11 09:41:13] 2025-10-11 13:40:41,090 | INFO     | sum of deviations: -6738417216.0
[2025-10-11 09:41:13] 2025-10-11 13:40:41,091 | INFO     | mean x: 1760187931.5
[2025-10-11 09:41:13] 2025-10-11 13:40:41,091 | INFO     | mean y: 2853870.625
[2025-10-11 09:41:13] 2025-10-11 13:40:41,091 | INFO     | -- intersect: 145953032947.98108
[2025-10-11 09:41:13] 2025-10-11 13:40:41,091 | INFO     | intersect: 145953032947.98108
[2025-10-11 09:41:13] 2025-10-11 13:40:41,091 | INFO     | chi2: 0.06929495857408757
[2025-10-11 09:41:13] 2025-10-11 13:40:41,091 | INFO     | -- intersect: 145953032947.98108
[2025-10-11 09:41:13] 2025-10-11 13:40:41,091 | INFO     | current memory leak: -82.92 B/s (using 64 data points, chi2=0.07)
[2025-10-11 09:41:13] 2025-10-11 13:40:41,092 | INFO     | could have reported an average CPU frequency of 2037 MHz (6 samples)
[2025-10-11 09:41:13] 2025-10-11 13:40:41,092 | INFO     | ..............................
[2025-10-11 09:41:13] 2025-10-11 13:40:41,092 | INFO     | . Timing measurements:
[2025-10-11 09:41:13] 2025-10-11 13:40:41,092 | INFO     | . get job = 0 s
[2025-10-11 09:41:13] 2025-10-11 13:40:41,092 | INFO     | . initial setup = 2 s
[2025-10-11 09:41:13] 2025-10-11 13:40:41,092 | INFO     | . payload setup = 6 s
[2025-10-11 09:41:13] 2025-10-11 13:40:41,092 | INFO     | . stage-in = 0 s
[2025-10-11 09:41:13] 2025-10-11 13:40:41,092 | INFO     | . payload execution = 4331 s
[2025-10-11 09:41:13] 2025-10-11 13:40:41,092 | INFO     | . stage-out = 0 s
[2025-10-11 09:41:13] 2025-10-11 13:40:41,093 | INFO     | . log creation = 0 s
[2025-10-11 09:41:13] 2025-10-11 13:40:41,093 | INFO     | ..............................
[2025-10-11 09:41:13] 2025-10-11 13:40:41,173 | INFO     | 
[2025-10-11 09:41:13] 2025-10-11 13:40:41,173 | INFO     | job summary report
[2025-10-11 09:41:13] 2025-10-11 13:40:41,173 | INFO     | --------------------------------------------------
[2025-10-11 09:41:13] 2025-10-11 13:40:41,174 | INFO     | PanDA job id: 6837333401
[2025-10-11 09:41:13] 2025-10-11 13:40:41,174 | INFO     | task id: 46676269
[2025-10-11 09:41:13] 2025-10-11 13:40:41,174 | INFO     | errors: (none)
[2025-10-11 09:41:13] 2025-10-11 13:40:41,174 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-11 09:41:13] 2025-10-11 13:40:41,174 | INFO     | pilot state: finished 
[2025-10-11 09:41:13] 2025-10-11 13:40:41,174 | INFO     | transexitcode: 0
[2025-10-11 09:41:13] 2025-10-11 13:40:41,175 | INFO     | exeerrorcode: 0
[2025-10-11 09:41:13] 2025-10-11 13:40:41,175 | INFO     | exeerrordiag: 
[2025-10-11 09:41:13] 2025-10-11 13:40:41,175 | INFO     | exitcode: 0
[2025-10-11 09:41:13] 2025-10-11 13:40:41,175 | INFO     | exitmsg: OK
[2025-10-11 09:41:13] 2025-10-11 13:40:41,175 | INFO     | cpuconsumptiontime: 46890 s
[2025-10-11 09:41:13] 2025-10-11 13:40:41,175 | INFO     | nevents: 400
[2025-10-11 09:41:13] 2025-10-11 13:40:41,176 | INFO     | neventsw: 0
[2025-10-11 09:41:13] 2025-10-11 13:40:41,176 | INFO     | pid: 7468
[2025-10-11 09:41:13] 2025-10-11 13:40:41,176 | INFO     | pgrp: 7468
[2025-10-11 09:41:13] 2025-10-11 13:40:41,176 | INFO     | corecount: 12
[2025-10-11 09:41:13] 2025-10-11 13:40:41,176 | INFO     | event service: False
[2025-10-11 09:41:13] 2025-10-11 13:40:41,176 | INFO     | sizes: {0: 2348853, 5: 2349115, 11: 2349171, 4342: 2384215, 4343: 2384215, 4348: 2384409}
[2025-10-11 09:41:13] 2025-10-11 13:40:41,177 | INFO     | --------------------------------------------------
[2025-10-11 09:41:13] 2025-10-11 13:40:41,177 | INFO     | 
[2025-10-11 09:41:13] 2025-10-11 13:40:41,177 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-11 09:41:13] 2025-10-11 13:40:41,201 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-11 09:41:13] 2025-10-11 13:40:41,201 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-11 09:41:13] 2025-10-11 13:40:41,201 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-11 09:41:13] 2025-10-11 13:40:41,202 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-11 09:41:13] 2025-10-11 13:40:41,202 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-11 09:41:13] 2025-10-11 13:40:41,202 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-11 09:41:13] 2025-10-11 13:40:41,202 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-11 09:41:13] 2025-10-11 13:40:41,202 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-11 09:41:13] 2025-10-11 13:40:41,202 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-11 09:41:13] 2025-10-11 13:40:41,203 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-11 09:41:13] 2025-10-11 13:40:41,203 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-11 09:41:13] 2025-10-11 13:40:41,203 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-11 09:41:13] 2025-10-11 13:40:41,203 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-11 09:41:13] 2025-10-11 13:40:41,203 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-11 09:41:13] 2025-10-11 13:40:41,203 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-11 09:41:13] 2025-10-11 13:40:41,204 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-11 09:41:13] 2025-10-11 13:40:41,204 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-11 09:41:13] 2025-10-11 13:40:41,204 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-11 09:41:13] 2025-10-11 13:40:41,204 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-11 09:41:13] 2025-10-11 13:40:41,204 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-11 09:41:13] 2025-10-11 13:40:41,205 | INFO     | job 6837333401 has completed (purged errors)
[2025-10-11 09:41:13] 2025-10-11 13:40:41,205 | INFO     | overall cleanup function is called
[2025-10-11 09:41:13] 2025-10-11 13:40:41,300 | WARNING  | process 7468 can no longer be monitored (due to stat problems) - aborting
[2025-10-11 09:41:13] 2025-10-11 13:40:41,372 | INFO     | using path: /tmp/boinchome/slots/0/memory_monitor_summary.json (trf name=prmon)
[2025-10-11 09:41:13] 2025-10-11 13:40:41,458 | INFO     | number of running child processes to parent process 7468: 1
[2025-10-11 09:41:13] 2025-10-11 13:40:41,458 | INFO     | maximum number of monitored processes: 6
[2025-10-11 09:41:13] 2025-10-11 13:40:41,458 | INFO     | aborting job monitoring since job object (job id=6837333401) has expired
[2025-10-11 09:41:13] 2025-10-11 13:40:42,210 | INFO     | --- collectZombieJob: --- 10, [7468]
[2025-10-11 09:41:13] 2025-10-11 13:40:42,210 | INFO     | zombie collector waiting for pid 7468
[2025-10-11 09:41:13] 2025-10-11 13:40:42,210 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-11 09:41:13] 2025-10-11 13:40:42,210 | INFO     | collected zombie processes
[2025-10-11 09:41:13] 2025-10-11 13:40:42,210 | INFO     | will attempt to kill all subprocesses of pid=7468
[2025-10-11 09:41:13] 2025-10-11 13:40:42,298 | INFO     | process IDs to be killed: [7468] (in reverse order)
[2025-10-11 09:41:13] 2025-10-11 13:40:42,378 | WARNING  | found no corresponding commands to process id(s)
[2025-10-11 09:41:13] 2025-10-11 13:40:42,379 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-11 09:41:13] 2025-10-11 13:40:42,382 | INFO     | did not find any defunct processes belonging to 7468
[2025-10-11 09:41:13] 2025-10-11 13:40:42,385 | INFO     | did not find any defunct processes belonging to 7468
[2025-10-11 09:41:13] 2025-10-11 13:40:42,386 | INFO     | ready for new job
[2025-10-11 09:41:13] 2025-10-11 13:40:42,386 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-11 09:41:13] 2025-10-11 13:40:42,387 | INFO     | ***************************************
[2025-10-11 09:41:13] 2025-10-11 13:40:42,388 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-11 09:41:13] 2025-10-11 13:40:42,388 | INFO     | ***************************************
[2025-10-11 09:41:13] 2025-10-11 13:40:42,388 | INFO     | 
[2025-10-11 09:41:13] 2025-10-11 13:40:42,389 | INFO     | architecture information:
[2025-10-11 09:41:13] 2025-10-11 13:40:42,389 | INFO     | executing command: cat /etc/os-release
[2025-10-11 09:41:13] 2025-10-11 13:40:42,404 | INFO     | cat /etc/os-release:
[2025-10-11 09:41:13] NAME="CentOS Linux"
[2025-10-11 09:41:13] VERSION="7 (Core)"
[2025-10-11 09:41:13] ID="centos"
[2025-10-11 09:41:13] ID_LIKE="rhel fedora"
[2025-10-11 09:41:13] VERSION_ID="7"
[2025-10-11 09:41:13] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-11 09:41:13] ANSI_COLOR="0;31"
[2025-10-11 09:41:13] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-11 09:41:13] HOME_URL="https://www.centos.org/"
[2025-10-11 09:41:13] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-11 09:41:13] 
[2025-10-11 09:41:13] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-11 09:41:13] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-11 09:41:13] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-11 09:41:13] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-11 09:41:13] 
[2025-10-11 09:41:13] 2025-10-11 13:40:42,405 | INFO     | ***************************************
[2025-10-11 09:41:13] 2025-10-11 13:40:42,906 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-11 09:41:13] 2025-10-11 13:40:42,923 | INFO     | sufficient remaining disk space (29362225152 B)
[2025-10-11 09:41:13] 2025-10-11 13:40:42,923 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-11 09:41:13] 2025-10-11 13:40:42,924 | INFO     | current server update state: UPDATING_FINAL
[2025-10-11 09:41:13] 2025-10-11 13:40:42,924 | INFO     | update_server=False
[2025-10-11 09:41:13] 2025-10-11 13:40:42,924 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-11 09:41:13] 2025-10-11 13:40:42,924 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-11 09:41:13] 2025-10-11 13:40:42,924 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-11 09:41:13] 2025-10-11 13:40:42,925 | INFO     | aborting loop
[2025-10-11 09:41:13] 2025-10-11 13:40:42,926 | INFO     | all job control threads have been joined
[2025-10-11 09:41:13] 2025-10-11 13:40:43,218 | INFO     | all payload control threads have been joined
[2025-10-11 09:41:13] 2025-10-11 13:40:43,229 | INFO     | all data control threads have been joined
[2025-10-11 09:41:13] 2025-10-11 13:40:43,345 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-11 09:41:13] 2025-10-11 13:40:43,929 | INFO     | [job] retrieve thread has finished
[2025-10-11 09:41:13] 2025-10-11 13:40:43,930 | INFO     | [job] queue monitor thread has finished
[2025-10-11 09:41:13] 2025-10-11 13:40:43,930 | INFO     | [job] job monitor thread has finished
[2025-10-11 09:41:13] 2025-10-11 13:40:43,931 | INFO     | [job] control thread has finished
[2025-10-11 09:41:13] 2025-10-11 13:40:44,224 | INFO     | [payload] control thread has finished
[2025-10-11 09:41:13] 2025-10-11 13:40:44,231 | INFO     | [data] control thread has finished
[2025-10-11 09:41:13] 2025-10-11 13:40:44,331 | INFO     | [job] create_data_payload thread has finished
[2025-10-11 09:41:13] 2025-10-11 13:40:44,342 | INFO     | [job] validate thread has finished
[2025-10-11 09:41:13] 2025-10-11 13:40:44,376 | INFO     | [payload] failed_post thread has finished
[2025-10-11 09:41:13] 2025-10-11 13:40:44,448 | INFO     | [payload] execute_payloads thread has finished
[2025-10-11 09:41:13] 2025-10-11 13:40:44,731 | INFO     | [payload] validate_pre thread has finished
[2025-10-11 09:41:13] 2025-10-11 13:40:45,133 | INFO     | [payload] validate_post thread has finished
[2025-10-11 09:41:13] 2025-10-11 13:40:45,193 | INFO     | [data] copytool_in thread has finished
[2025-10-11 09:41:13] 2025-10-11 13:40:45,347 | INFO     | [data] copytool_out thread has finished
[2025-10-11 09:41:13] 2025-10-11 13:40:45,924 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-11 09:41:13] 2025-10-11 13:40:49,930 | INFO     | [data] queue_monitor thread has finished
[2025-10-11 09:41:13] 2025-10-11 13:40:53,211 | INFO     | job.realtimelogging is not enabled
[2025-10-11 09:41:13] 2025-10-11 13:40:54,217 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-11 09:41:13] 2025-10-11 13:41:03,183 | INFO     | [monitor] cgroup control has ended
[2025-10-11 09:41:13] 2025-10-11 13:41:04,189 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140060251989824)>', '<ExcThread(monitor, started 140059529430784)>']
[2025-10-11 09:41:13] 2025-10-11 13:41:09,191 | INFO     | all workflow threads have been joined
[2025-10-11 09:41:13] 2025-10-11 13:41:09,191 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-11 09:41:13] 2025-10-11 13:41:09,191 | INFO     | traces error code: 0
[2025-10-11 09:41:13] 2025-10-11 13:41:09,191 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-11 09:41:13] 2025-10-11 13:41:13,594 | INFO     | PID=889 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j
[2025-10-11 09:41:13] 2025-10-11 13:41:13,595 | INFO     | found 0 job(s) in 20 queues
[2025-10-11 09:41:13] 2025-10-11 13:41:13,596 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-11 09:41:13] 2025-10-11 13:41:13,596 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-11 09:41:13] 2025-10-11 13:41:13,596 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-11 09:41:13] 2025-10-11 13:41:13,596 | INFO     | [monitor] control thread has ended
[2025-10-11 09:41:13] 2025-10-11 13:41:13,685 [wrapper] ==== pilot stdout END ====
[2025-10-11 09:41:13] 2025-10-11 13:41:13,689 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-11 09:41:13] 2025-10-11 13:41:13,693 [wrapper] pilotpid: 889
[2025-10-11 09:41:13] 2025-10-11 13:41:13,697 [wrapper] Pilot exit status: 0
[2025-10-11 09:41:13] 2025-10-11 13:41:13,713 [wrapper] pandaids: 6837333401
[2025-10-11 09:41:13] 2025-10-11 13:41:13,751 [wrapper] cleanup supervisor_pilot 11988 890
[2025-10-11 09:41:13] 2025-10-11 13:41:13,754 [wrapper] Test setup, not cleaning
[2025-10-11 09:41:13] 2025-10-11 13:41:13,758 [wrapper] apfmon messages muted
[2025-10-11 09:41:13] 2025-10-11 13:41:13,762 [wrapper] ==== wrapper stdout END ====
[2025-10-11 09:41:13] 2025-10-11 13:41:13,765 [wrapper] ==== wrapper stderr END ====
[2025-10-11 09:41:13]  *** Error codes and diagnostics ***
[2025-10-11 09:41:13]     "exeErrorCode": 0,
[2025-10-11 09:41:13]     "exeErrorDiag": "",
[2025-10-11 09:41:13]     "pilotErrorCode": 0,
[2025-10-11 09:41:13]     "pilotErrorDiag": "",
[2025-10-11 09:41:13]  *** Listing of results directory ***
[2025-10-11 09:41:13] total 411036
[2025-10-11 09:41:13] -rw-r--r-- 1 boincer umatlas    557409 Oct  9 07:10 pilot3.tar.gz
[2025-10-11 09:41:13] -rwx------ 1 boincer umatlas     36292 Oct  9 07:25 runpilot2-wrapper.sh
[2025-10-11 09:41:13] -rw-r--r-- 1 boincer umatlas      5112 Oct  9 07:25 queuedata.json
[2025-10-11 09:41:13] -rw-r--r-- 1 boincer umatlas       100 Oct 11 08:27 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-11 09:41:13] -rwxr-xr-x 1 boincer umatlas      7986 Oct 11 08:27 run_atlas
[2025-10-11 09:41:13] -rw-r--r-- 1 boincer umatlas       105 Oct 11 08:27 job.xml
[2025-10-11 09:41:13] -rw-r--r-- 2 boincer umatlas 223141823 Oct 11 08:27 EVNT.46676267._000645.pool.root.1
[2025-10-11 09:41:13] -rw-r--r-- 2 boincer umatlas     15120 Oct 11 08:27 start_atlas.sh
[2025-10-11 09:41:13] drwxrwx--x 2 boincer umatlas      4096 Oct 11 08:27 shared
[2025-10-11 09:41:13] -rw-r--r-- 2 boincer umatlas    569673 Oct 11 08:27 input.tar.gz
[2025-10-11 09:41:13] -rw-r--r-- 1 boincer umatlas         0 Oct 11 08:27 boinc_lockfile
[2025-10-11 09:41:13] -rw-r--r-- 1 boincer umatlas      2548 Oct 11 08:27 pandaJob.out
[2025-10-11 09:41:13] -rw------- 1 boincer umatlas    975504 Oct 11 08:27 agis_schedconf.cvmfs.json
[2025-10-11 09:41:13] -rw------- 1 boincer umatlas   1560580 Oct 11 08:27 agis_ddmendpoints.agis.ALL.json
[2025-10-11 09:41:13] drwx------ 5 boincer umatlas      4096 Oct 11 08:27 pilot3
[2025-10-11 09:41:13] -rw-r--r-- 1 boincer umatlas      5953 Oct 11 09:39 init_data.xml
[2025-10-11 09:41:13] -rw------- 1 boincer umatlas 191854468 Oct 11 09:40 HITS.46676269._015680.pool.root.1
[2025-10-11 09:41:13] -rw-r--r-- 1 boincer umatlas       530 Oct 11 09:40 boinc_task_state.xml
[2025-10-11 09:41:13] -rw------- 1 boincer umatlas      1049 Oct 11 09:40 memory_monitor_summary.json
[2025-10-11 09:41:13] -rw------- 1 boincer umatlas    369114 Oct 11 09:40 log.46676269._015680.job.log.tgz.1
[2025-10-11 09:41:13] -rw------- 1 boincer umatlas      7858 Oct 11 09:40 heartbeat.json
[2025-10-11 09:41:13] -rw-r--r-- 1 boincer umatlas      8192 Oct 11 09:40 boinc_mmap_file
[2025-10-11 09:41:13] -rw-r--r-- 1 boincer umatlas        27 Oct 11 09:40 wrapper_checkpoint.txt
[2025-10-11 09:41:13] -rw------- 1 boincer umatlas        95 Oct 11 09:41 pilot_heartbeat.json
[2025-10-11 09:41:13] -rw------- 1 boincer umatlas       743 Oct 11 09:41 pilotlog.txt
[2025-10-11 09:41:13] -rw------- 1 boincer umatlas    634334 Oct 11 09:41 log.46676269._015680.job.log.1
[2025-10-11 09:41:13] -rw------- 1 boincer umatlas       357 Oct 11 09:41 output.list
[2025-10-11 09:41:13] -rw-r--r-- 1 boincer umatlas       620 Oct 11 09:41 runtime_log
[2025-10-11 09:41:13] -rw------- 1 boincer umatlas   1024000 Oct 11 09:41 result.tar.gz
[2025-10-11 09:41:13] -rw-r--r-- 1 boincer umatlas      8705 Oct 11 09:41 runtime_log.err
[2025-10-11 09:41:13] -rw------- 1 boincer umatlas       659 Oct 11 09:41 4XhLDmLx3Q8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmTXZNDmeOcJin.diag
[2025-10-11 09:41:13] -rw-r--r-- 1 boincer umatlas     21706 Oct 11 09:41 stderr.txt
[2025-10-11 09:41:13] HITS file was successfully produced:
[2025-10-11 09:41:13] -rw------- 1 boincer umatlas 191854468 Oct 11 09:40 shared/HITS.pool.root.1
[2025-10-11 09:41:13]  *** Contents of shared directory: ***
[2025-10-11 09:41:13] total 406852
[2025-10-11 09:41:13] -rw-r--r-- 2 boincer umatlas 223141823 Oct 11 08:27 ATLAS.root_0
[2025-10-11 09:41:13] -rw-r--r-- 2 boincer umatlas     15120 Oct 11 08:27 start_atlas.sh
[2025-10-11 09:41:13] -rw-r--r-- 2 boincer umatlas    569673 Oct 11 08:27 input.tar.gz
[2025-10-11 09:41:13] -rw------- 1 boincer umatlas 191854468 Oct 11 09:40 HITS.pool.root.1
[2025-10-11 09:41:13] -rw------- 1 boincer umatlas   1024000 Oct 11 09:41 result.tar.gz
09:41:15 (28789): run_atlas exited; CPU time 46869.509707
09:41:15 (28789): called boinc_finish(0)

</stderr_txt>
]]>

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