Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-10-11 06:50:22 (17876): vboxwrapper version 26210
2025-10-11 06:50:22 (17876): BOINC client version: 8.2.4
2025-10-11 06:50:23 (17876): Detected: VirtualBox VboxManage Interface (Version: 7.0.6)
2025-10-11 06:50:23 (17876): Successfully copied 'init_data.xml' to the shared directory.
2025-10-11 06:50:24 (17876): Create VM. (boinc_1a1dfc600fb4ff81, slot#1)
2025-10-11 06:50:24 (17876): Setting Memory Size for VM. (4800MB)
2025-10-11 06:50:24 (17876): Setting CPU Count for VM. (8)
2025-10-11 06:50:25 (17876): Setting Chipset Options for VM.
2025-10-11 06:50:25 (17876): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-10-11 06:50:25 (17876): Setting Boot Options for VM.
2025-10-11 06:50:26 (17876): Setting Network Configuration for NAT. (Driver: virtio)
2025-10-11 06:50:26 (17876): Enabling VM Network Access.
2025-10-11 06:50:26 (17876): Disabling USB Support for VM.
2025-10-11 06:50:26 (17876): Disabling COM Port Support for VM.
2025-10-11 06:50:27 (17876): Disabling LPT Port Support for VM.
2025-10-11 06:50:27 (17876): Disabling Audio Support for VM.
2025-10-11 06:50:27 (17876): Disabling Clipboard Support for VM.
2025-10-11 06:50:28 (17876): Disabling Drag and Drop Support for VM.
2025-10-11 06:50:28 (17876): Adding storage controller(s) to VM.
2025-10-11 06:50:28 (17876): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-10-11 06:50:30 (17876): Adding VirtualBox Guest Additions to VM.
2025-10-11 06:50:30 (17876): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-10-11 06:50:31 (17876): forwarding host port 57982 to guest port 80
2025-10-11 06:50:31 (17876): Enabling remote desktop for VM.
2025-10-11 06:50:31 (17876): Required extension pack not installed, remote desktop not enabled.
2025-10-11 06:50:31 (17876): Enabling shared directory for VM.
2025-10-11 06:50:32 (17876): Starting VM using VBoxManage interface. (boinc_1a1dfc600fb4ff81, slot#1)
2025-10-11 06:50:37 (17876): Successfully started VM. (PID = '35656')
2025-10-11 06:50:37 (17876): Reporting VM Process ID to BOINC.
2025-10-11 06:50:37 (17876): Guest Log: BIOS: VirtualBox 7.0.6
2025-10-11 06:50:37 (17876): Guest Log: CPUID EDX: 0x178bfbff
2025-10-11 06:50:37 (17876): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-10-11 06:50:37 (17876): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-10-11 06:50:37 (17876): VM state change detected. (old = 'poweredoff', new = 'running')
2025-10-11 06:50:37 (17876): Detected: Web Application Enabled (http://localhost:57982)
2025-10-11 06:50:37 (17876): Preference change detected
2025-10-11 06:50:37 (17876): Setting CPU throttle for VM. (60%)
2025-10-11 06:50:37 (17876): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-10-11 06:50:39 (17876): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-10-11 06:50:39 (17876): Guest Log: BIOS: Booting from Hard Disk...
2025-10-11 06:50:42 (17876): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-10-11 06:50:42 (17876): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-10-11 06:50:42 (17876): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-10-11 06:50:42 (17876): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-10-11 06:50:42 (17876): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-10-11 06:50:42 (17876): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-10-11 06:50:42 (17876): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-10-11 06:50:42 (17876): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-10-11 06:50:42 (17876): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-10-11 06:50:42 (17876): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-10-11 06:50:42 (17876): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-10-11 06:50:42 (17876): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-10-11 06:50:42 (17876): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-10-11 06:50:42 (17876): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-10-11 06:50:42 (17876): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-10-11 06:50:42 (17876): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-10-11 06:50:42 (17876): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-10-11 06:50:42 (17876): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-10-11 06:50:42 (17876): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-10-11 06:50:42 (17876): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-10-11 06:50:42 (17876): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-10-11 06:50:42 (17876): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-10-11 06:50:42 (17876): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-10-11 06:50:42 (17876): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-10-11 06:50:42 (17876): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-10-11 06:50:42 (17876): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-10-11 06:50:42 (17876): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-10-11 06:50:42 (17876): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-10-11 06:50:42 (17876): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-10-11 06:50:42 (17876): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-10-11 06:50:42 (17876): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-10-11 06:50:42 (17876): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-10-11 06:50:52 (17876): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-10-11 06:50:52 (17876): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-10-11 06:51:11 (17876): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-10-11 06:51:11 (17876): Guest Log: 00:00:00.000104 main     Log opened 2025-10-11T06:51:08.901374000Z
2025-10-11 06:51:11 (17876): Guest Log: 00:00:00.000173 main     OS Product: Linux
2025-10-11 06:51:11 (17876): Guest Log: 00:00:00.000204 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-10-11 06:51:11 (17876): Guest Log: 00:00:00.000225 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-10-11 06:51:11 (17876): Guest Log: 00:00:00.000252 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-10-11 06:51:11 (17876): Guest Log: 00:00:00.000252 main     Process ID: 1390
2025-10-11 06:51:11 (17876): Guest Log: 00:00:00.000253 main     Package type: LINUX_64BITS_GENERIC
2025-10-11 06:51:11 (17876): Guest Log: 00:00:00.000767 main     5.2.32 r132073 started. Verbose level = 0
2025-10-11 06:51:11 (17876): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-10-11 06:51:11 (17876): Guest Log: [INFO] Mounting shared directory
2025-10-11 06:51:11 (17876): Guest Log: [INFO] Checking for init_data.xml
2025-10-11 06:51:21 (17876): Guest Log: 00:00:10.004653 timesync vgsvcTimeSyncWorker: Radical guest time change: 18 011 801 966 000ns (GuestNow=1 760 183 480 704 848 000 ns GuestLast=1 760 165 468 902 882 000 ns fSetTimeLastLoop=true )
2025-10-11 06:51:34 (17876): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-10-11 06:51:34 (17876): Guest Log: [INFO] Detected branch: prod
2025-10-11 06:51:34 (17876): Guest Log: This is the prod version of the ATLAS job wrapper
2025-10-11 06:51:34 (17876): Guest Log: Copying input files
2025-10-11 06:51:35 (17876): Guest Log: Copied input files into RunAtlas.
2025-10-11 06:51:35 (17876): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-10-11 06:51:35 (17876): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-10-11 06:51:35 (17876): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-10-11 06:51:35 (17876): Guest Log: Further information can be found at the LHC@home message board.
2025-10-11 06:51:43 (17876): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-10-11 06:51:43 (17876): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-10-11 06:51:43 (17876): Guest Log: 2.6.3.0 1675 0 30132 151583 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-10-11 06:51:46 (17876): Guest Log: copied the webapp to /var/www
2025-10-11 06:51:46 (17876): Guest Log: ATHENA_PROC_NUMBER=8
2025-10-11 06:51:46 (17876): Guest Log: ATHENA_CORE_NUMBER=8
2025-10-11 06:51:46 (17876): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-10-11 06:51:46 (17876): Guest Log:  *** Starting ATLAS job. (PandaID=6838293207 taskID=46676269) ***
2025-10-11 08:09:38 (17876): Guest Log:  *** Job finished ***
2025-10-11 08:09:38 (17876): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-10-11 08:09:38 (17876): Guest Log: 2025-10-11 13:09:27,450 | INFO     | end of generic workflow (traces error code: 0)
2025-10-11 08:09:38 (17876): Guest Log: 2025-10-11 13:09:27,450 | INFO     | traces error code: 0
2025-10-11 08:09:38 (17876): Guest Log: 2025-10-11 13:09:27,450 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-10-11 08:09:38 (17876): Guest Log: 2025-10-11 13:09:37,458 | INFO     | PID=6101 has CPU usage=0.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE -z -t
2025-10-11 08:09:38 (17876): Guest Log: 2025-10-11 13:09:37,458 | INFO     | found 0 job(s) in 20 queues
2025-10-11 08:09:38 (17876): Guest Log: 2025-10-11 13:09:37,458 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-10-11 08:09:38 (17876): Guest Log: 2025-10-11 13:09:37,458 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-10-11 08:09:38 (17876): Guest Log: 2025-10-11 13:09:37,458 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-10-11 08:09:38 (17876): Guest Log: 2025-10-11 13:09:37,458 | CRITICAL | thread 'MainThread' is not alive
2025-10-11 08:09:38 (17876): Guest Log: 2025-10-11 13:09:37,458 | INFO     | [monitor] control thread has ended
2025-10-11 08:09:38 (17876): Guest Log: 2025-10-11 13:09:37,535 [wrapper] ==== pilot stdout END ====
2025-10-11 08:09:38 (17876): Guest Log: 2025-10-11 13:09:37,538 [wrapper] ==== wrapper stdout RESUME ====
2025-10-11 08:09:38 (17876): Guest Log: 2025-10-11 13:09:37,541 [wrapper] pilotpid: 6101
2025-10-11 08:09:38 (17876): Guest Log: 2025-10-11 13:09:37,544 [wrapper] Pilot exit status: 0
2025-10-11 08:09:38 (17876): Guest Log: 2025-10-11 13:09:37,608 [wrapper] pandaids: 6838293207
2025-10-11 08:09:38 (17876): Guest Log: 2025-10-11 13:09:37,627 [wrapper] cleanup supervisor_pilot  1975 6102
2025-10-11 08:09:38 (17876): Guest Log: 2025-10-11 13:09:37,630 [wrapper] Test setup, not cleaning
2025-10-11 08:09:38 (17876): Guest Log: 2025-10-11 13:09:37,634 [wrapper] apfmon messages muted
2025-10-11 08:09:38 (17876): Guest Log: 2025-10-11 13:09:37,637 [wrapper] ==== wrapper stdout END ====
2025-10-11 08:09:38 (17876): Guest Log: 2025-10-11 13:09:37,640 [wrapper] ==== wrapper stderr END ====
2025-10-11 08:09:38 (17876): Guest Log:  *** Error codes and diagnostics ***
2025-10-11 08:09:38 (17876): Guest Log:     "exeErrorCode": 0,
2025-10-11 08:09:38 (17876): Guest Log:     "exeErrorDiag": "",
2025-10-11 08:09:38 (17876): Guest Log:     "pilotErrorCode": 0,
2025-10-11 08:09:38 (17876): Guest Log:     "pilotErrorDiag": "",
2025-10-11 08:09:38 (17876): Guest Log:  *** Listing of results directory ***
2025-10-11 08:09:38 (17876): Guest Log: total 194704
2025-10-11 08:09:38 (17876): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Oct 11 09:18 queuedata.json
2025-10-11 08:09:38 (17876): Guest Log: -rw-r--r--. 1 atlas atlas    557409 Oct 11 09:19 pilot3.tar.gz
2025-10-11 08:09:38 (17876): Guest Log: -rwx------. 1 atlas atlas     36292 Oct 11 09:19 runpilot2-wrapper.sh
2025-10-11 08:09:38 (17876): Guest Log: -rwxr-xr-x. 1 atlas atlas      8594 Oct 11 11:51 init_data.xml
2025-10-11 08:09:38 (17876): Guest Log: -rwxr-xr-x. 1 atlas atlas    569676 Oct 11 11:51 input.tar.gz
2025-10-11 08:09:38 (17876): Guest Log: -rwxr-xr-x. 1 atlas atlas     15120 Oct 11 11:51 start_atlas.sh
2025-10-11 08:09:38 (17876): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Oct 11 11:51 EVNT.46676267._002212.pool.root.1 -> /data/./ATLAS.root_0
2025-10-11 08:09:38 (17876): Guest Log: -rw-r--r--. 1 atlas atlas      2549 Oct 11 11:51 pandaJob.out
2025-10-11 08:09:38 (17876): Guest Log: -rw-------. 1 atlas atlas    975509 Oct 11 11:52 agis_schedconf.cvmfs.json
2025-10-11 08:09:38 (17876): Guest Log: -rw-------. 1 atlas atlas   1560580 Oct 11 11:52 agis_ddmendpoints.agis.ALL.json
2025-10-11 08:09:38 (17876): Guest Log: drwx------. 5 atlas atlas      4096 Oct 11 11:52 pilot3
2025-10-11 08:09:38 (17876): Guest Log: -rw-------. 1 atlas atlas 193739126 Oct 11 13:08 HITS.46676269._055155.pool.root.1
2025-10-11 08:09:38 (17876): Guest Log: -rw-------. 1 atlas atlas      1031 Oct 11 13:08 memory_monitor_summary.json
2025-10-11 08:09:38 (17876): Guest Log: -rw-------. 1 atlas atlas    305303 Oct 11 13:08 log.46676269._055155.job.log.tgz.1
2025-10-11 08:09:38 (17876): Guest Log: -rw-------. 1 atlas atlas        95 Oct 11 13:09 pilot_heartbeat.json
2025-10-11 08:09:38 (17876): Guest Log: -rw-------. 1 atlas atlas      7823 Oct 11 13:09 heartbeat.json
2025-10-11 08:09:38 (17876): Guest Log: -rw-------. 1 atlas atlas       814 Oct 11 13:09 pilotlog.txt
2025-10-11 08:09:38 (17876): Guest Log: -rw-------. 1 atlas atlas    598327 Oct 11 13:09 log.46676269._055155.job.log.1
2025-10-11 08:09:38 (17876): Guest Log: -rw-------. 1 atlas atlas       357 Oct 11 13:09 output.list
2025-10-11 08:09:38 (17876): Guest Log: -rw-r--r--. 1 atlas atlas       620 Oct 11 13:09 runtime_log
2025-10-11 08:09:38 (17876): Guest Log: -rw-------. 1 atlas atlas    921600 Oct 11 13:09 result.tar.gz
2025-10-11 08:09:38 (17876): Guest Log: -rw-------. 1 atlas atlas       658 Oct 11 13:09 xLKLDmIwkR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmL2fNDmrLjpKn.diag
2025-10-11 08:09:38 (17876): Guest Log: -rw-r--r--. 1 atlas atlas      8651 Oct 11 13:09 runtime_log.err
2025-10-11 08:09:38 (17876): Guest Log: Looking for outputfile HITS.46676269._055155.pool.root.1
2025-10-11 08:09:38 (17876): Guest Log: HITS file was successfully produced
2025-10-11 08:09:38 (17876): Guest Log: -rw-------. 1 atlas atlas 193739126 Oct 11 13:08 /home/atlas/RunAtlas/HITS.46676269._055155.pool.root.1
2025-10-11 08:09:39 (17876): Guest Log: Successfully finished the ATLAS job!
2025-10-11 08:09:39 (17876): Guest Log: Copying the results back to the shared directory!
2025-10-11 08:09:39 (17876): Guest Log:  *** Contents of shared directory: ***
2025-10-11 08:09:39 (17876): Guest Log: total 406852
2025-10-11 08:09:39 (17876): Guest Log: -rwxrwxrwx. 1 root root 221351212 Oct 11 11:50 ATLAS.root_0
2025-10-11 08:09:39 (17876): Guest Log: -rwxrwxrwx. 1 root root 193739126 Oct 11 13:09 HITS.pool.root.1
2025-10-11 08:09:39 (17876): Guest Log: -rwxrwxrwx. 1 root root      8594 Oct 11 11:50 init_data.xml
2025-10-11 08:09:39 (17876): Guest Log: -rwxrwxrwx. 1 root root    569676 Oct 11 11:38 input.tar.gz
2025-10-11 08:09:39 (17876): Guest Log: -rwxrwxrwx. 1 root root    921600 Oct 11 13:09 result.tar.gz
2025-10-11 08:09:39 (17876): Guest Log: -rwxrwxrwx. 1 root root     15120 Oct 11 11:38 start_atlas.sh
2025-10-11 08:09:39 (17876): Guest Log:  *** Success! Shutting down the machine. ***
2025-10-11 08:09:39 (17876): VM Completion File Detected.
2025-10-11 08:09:39 (17876): Powering off VM.
2025-10-11 08:09:40 (17876): Successfully stopped VM.
2025-10-11 08:09:40 (17876): Deregistering VM. (boinc_1a1dfc600fb4ff81, slot#1)
2025-10-11 08:09:40 (17876): Removing network bandwidth throttle group from VM.
2025-10-11 08:09:40 (17876): Removing VM from VirtualBox.
2025-10-11 08:09:46 (17876): called boinc_finish(0)

</stderr_txt>
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