Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
12:23:09 (159279): wrapper (7.7.26015): starting
12:23:09 (159279): wrapper: running run_atlas (--nthreads 12)
[2025-10-11 12:23:09] Arguments: --nthreads 12
[2025-10-11 12:23:09] Threads: 12
[2025-10-11 12:23:09] Checking for CVMFS
[2025-10-11 12:23:10] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 12:23:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 12:23:10] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 12:23:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 12:23:10] 2.11.0.0 3299214 1617 85812 151584 1 187 5132020 6144000 13831 130560 0 31782619 100.000 60506 203 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2025-10-11 12:23:10] CVMFS is ok
[2025-10-11 12:23:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 12:23:10] Checking for apptainer binary...
[2025-10-11 12:23:10] apptainer is not installed, using version from CVMFS
[2025-10-11 12:23:10] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 12:23:10] radiat0r
[2025-10-11 12:23:10] apptainer works
[2025-10-11 12:23:10] Set ATHENA_PROC_NUMBER=12
[2025-10-11 12:23:10] Set ATHENA_CORE_NUMBER=12
[2025-10-11 12:23:10] Starting ATLAS job with PandaID=6838063577
[2025-10-11 12:23:10] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/23 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-11 13:12:37]  *** The last 200 lines of the pilot log: ***
[2025-10-11 13:12:37]  storage_token=
[2025-10-11 13:12:37]  surl=/var/lib/boinc/slots/23/PanDA_Pilot-6838063577/log.46676269._050454.job.log.tgz.1
[2025-10-11 13:12:37]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/92/bb/log.46676269._050454.job.log.tgz.1
[2025-10-11 13:12:37]  workdir=None
[2025-10-11 13:12:37] ]
[2025-10-11 13:12:37] 2025-10-11 13:11:42,290 | INFO     | transferring file log.46676269._050454.job.log.tgz.1 from /var/lib/boinc/slots/23/PanDA_Pilot-6838063577/log.46676269._050454.job.log.tgz.1 to /var/lib/boinc/slots
[2025-10-11 13:12:37] 2025-10-11 13:11:42,290 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/23/PanDA_Pilot-6838063577/log.46676269._050454.job.log.tgz.1 /var/lib/boinc/slots/23/log.46676269._050454.j
[2025-10-11 13:12:37] 2025-10-11 13:11:42,322 | INFO     | adding to output.list: log.46676269._050454.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/92/bb/log.46676269._050454.job.log.tg
[2025-10-11 13:12:37] 2025-10-11 13:11:42,324 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-11 13:12:37] 2025-10-11 13:11:42,324 | INFO     | summary of transferred files:
[2025-10-11 13:12:37] 2025-10-11 13:11:42,325 | INFO     |  -- lfn=log.46676269._050454.job.log.tgz.1, status_code=0, status=transferred
[2025-10-11 13:12:37] 2025-10-11 13:11:42,325 | INFO     | stage-out finished correctly
[2025-10-11 13:12:37] 2025-10-11 13:11:44,179 | INFO     | PID=164039 has CPU usage=21.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-11 13:12:37] 2025-10-11 13:11:44,180 | INFO     | .. there are 17 such processes running
[2025-10-11 13:12:37] 2025-10-11 13:11:44,244 | WARNING  | process 172218 can no longer be monitored (due to stat problems) - aborting
[2025-10-11 13:12:37] 2025-10-11 13:11:44,245 | INFO     | using path: /var/lib/boinc/slots/23/PanDA_Pilot-6838063577/memory_monitor_summary.json (trf name=prmon)
[2025-10-11 13:12:37] 2025-10-11 13:11:44,983 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-11 13:12:37] 2025-10-11 13:11:45,160 | INFO     | number of running child processes to parent process 172218: 1
[2025-10-11 13:12:37] 2025-10-11 13:11:45,160 | INFO     | maximum number of monitored processes: 6
[2025-10-11 13:12:37] 2025-10-11 13:11:45,180 | INFO     | time since job start (2898s) is within the limit (172800.0s)
[2025-10-11 13:12:37] 2025-10-11 13:11:45,551 | INFO     | job 6838063577 has state=finished
[2025-10-11 13:12:37] 2025-10-11 13:11:45,551 | INFO     | preparing for final server update for job 6838063577 in state='finished'
[2025-10-11 13:12:37] 2025-10-11 13:11:45,552 | INFO     | this job has now completed (state=finished)
[2025-10-11 13:12:37] 2025-10-11 13:11:45,552 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-11 13:12:37] 2025-10-11 13:11:45,552 | INFO     | log transfer has been attempted: DONE
[2025-10-11 13:12:37] 2025-10-11 13:11:45,552 | INFO     | job 6838063577 has finished - writing final server update
[2025-10-11 13:12:37] 2025-10-11 13:11:45,553 | INFO     | total number of processed events: 400 (read)
[2025-10-11 13:12:37] 2025-10-11 13:11:45,555 | INFO     | executing command: lscpu
[2025-10-11 13:12:37] 2025-10-11 13:11:45,741 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-11 13:12:37] 2025-10-11 13:11:47,183 | INFO     | time since job start (2900s) is within the limit (172800.0s)
[2025-10-11 13:12:37] 2025-10-11 13:11:47,662 | INFO     | monitor loop #203: job 0:6838063577 is in state 'finished'
[2025-10-11 13:12:37] 2025-10-11 13:11:47,663 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 13:12:37] 2025-10-11 13:11:49,187 | INFO     | time since job start (2902s) is within the limit (172800.0s)
[2025-10-11 13:12:37] 2025-10-11 13:11:50,166 | INFO     | monitor loop #204: job 0:6838063577 is in state 'finished'
[2025-10-11 13:12:37] 2025-10-11 13:11:50,166 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 13:12:37] 2025-10-11 13:11:51,191 | INFO     | time since job start (2904s) is within the limit (172800.0s)
[2025-10-11 13:12:37] 2025-10-11 13:11:52,423 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-11 13:12:37] 2025-10-11 13:11:52,485 | INFO     | found 128 cores (64 cores per socket, 2 sockets) HT, CPU MHz: 2341.7077617187506
[2025-10-11 13:12:37] 2025-10-11 13:11:52,572 | INFO     | using path: /var/lib/boinc/slots/23/PanDA_Pilot-6838063577/memory_monitor_summary.json (trf name=prmon)
[2025-10-11 13:12:37] 2025-10-11 13:11:52,573 | INFO     | extracted standard info from prmon json
[2025-10-11 13:12:37] 2025-10-11 13:11:52,573 | INFO     | extracted standard memory fields from prmon json
[2025-10-11 13:12:37] 2025-10-11 13:11:52,573 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-11 13:12:37] 2025-10-11 13:11:52,574 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-11 13:12:37] 2025-10-11 13:11:52,574 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-11 13:12:37] 2025-10-11 13:11:52,575 | INFO     | fitting pss+swap vs Time
[2025-10-11 13:12:37] 2025-10-11 13:11:52,576 | INFO     | sum of square deviations: 19832930.0
[2025-10-11 13:12:37] 2025-10-11 13:11:52,576 | INFO     | sum of deviations: -113826152.5
[2025-10-11 13:12:37] 2025-10-11 13:11:52,576 | INFO     | mean x: 1760186936.5
[2025-10-11 13:12:37] 2025-10-11 13:11:52,576 | INFO     | mean y: 2694879.125
[2025-10-11 13:12:37] 2025-10-11 13:11:52,576 | INFO     | -- intersect: 10104848552.967283
[2025-10-11 13:12:37] 2025-10-11 13:11:52,576 | INFO     | intersect: 10104848552.967283
[2025-10-11 13:12:37] 2025-10-11 13:11:52,577 | INFO     | chi2: 0.00013167010870045838
[2025-10-11 13:12:37] 2025-10-11 13:11:52,577 | INFO     | -- intersect: 10104848552.967283
[2025-10-11 13:12:37] 2025-10-11 13:11:52,577 | INFO     | current memory leak: -5.74 B/s (using 40 data points, chi2=0.00)
[2025-10-11 13:12:37] 2025-10-11 13:11:52,577 | INFO     | could have reported an average CPU frequency of 2353 MHz (5 samples)
[2025-10-11 13:12:37] 2025-10-11 13:11:52,577 | INFO     | ..............................
[2025-10-11 13:12:37] 2025-10-11 13:11:52,577 | INFO     | . Timing measurements:
[2025-10-11 13:12:37] 2025-10-11 13:11:52,578 | INFO     | . get job = 0 s
[2025-10-11 13:12:37] 2025-10-11 13:11:52,578 | INFO     | . initial setup = 3 s
[2025-10-11 13:12:37] 2025-10-11 13:11:52,578 | INFO     | . payload setup = 8 s
[2025-10-11 13:12:37] 2025-10-11 13:11:52,578 | INFO     | . stage-in = 0 s
[2025-10-11 13:12:37] 2025-10-11 13:11:52,578 | INFO     | . payload execution = 2862 s
[2025-10-11 13:12:37] 2025-10-11 13:11:52,578 | INFO     | . stage-out = 0 s
[2025-10-11 13:12:37] 2025-10-11 13:11:52,578 | INFO     | . log creation = 0 s
[2025-10-11 13:12:37] 2025-10-11 13:11:52,578 | INFO     | ..............................
[2025-10-11 13:12:37] 2025-10-11 13:11:52,678 | INFO     | 
[2025-10-11 13:12:37] 2025-10-11 13:11:52,678 | INFO     | job summary report
[2025-10-11 13:12:37] 2025-10-11 13:11:52,678 | INFO     | --------------------------------------------------
[2025-10-11 13:12:37] 2025-10-11 13:11:52,680 | INFO     | PanDA job id: 6838063577
[2025-10-11 13:12:37] 2025-10-11 13:11:52,683 | INFO     | task id: 46676269
[2025-10-11 13:12:37] 2025-10-11 13:11:52,683 | INFO     | errors: (none)
[2025-10-11 13:12:37] 2025-10-11 13:11:52,683 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-11 13:12:37] 2025-10-11 13:11:52,683 | INFO     | pilot state: finished 
[2025-10-11 13:12:37] 2025-10-11 13:11:52,684 | INFO     | transexitcode: 0
[2025-10-11 13:12:37] 2025-10-11 13:11:52,684 | INFO     | exeerrorcode: 0
[2025-10-11 13:12:37] 2025-10-11 13:11:52,684 | INFO     | exeerrordiag: 
[2025-10-11 13:12:37] 2025-10-11 13:11:52,684 | INFO     | exitcode: 0
[2025-10-11 13:12:37] 2025-10-11 13:11:52,684 | INFO     | exitmsg: OK
[2025-10-11 13:12:37] 2025-10-11 13:11:52,684 | INFO     | cpuconsumptiontime: 30878 s
[2025-10-11 13:12:37] 2025-10-11 13:11:52,684 | INFO     | nevents: 400
[2025-10-11 13:12:37] 2025-10-11 13:11:52,684 | INFO     | neventsw: 0
[2025-10-11 13:12:37] 2025-10-11 13:11:52,684 | INFO     | pid: 172218
[2025-10-11 13:12:37] 2025-10-11 13:11:52,685 | INFO     | pgrp: 172218
[2025-10-11 13:12:37] 2025-10-11 13:11:52,685 | INFO     | corecount: 12
[2025-10-11 13:12:37] 2025-10-11 13:11:52,685 | INFO     | event service: False
[2025-10-11 13:12:37] 2025-10-11 13:11:52,685 | INFO     | sizes: {0: 2348744, 1: 2348886, 8: 2349148, 11: 2349176, 2875: 2374538, 2877: 2383538, 2879: 2383722, 2887: 2383948}
[2025-10-11 13:12:37] 2025-10-11 13:11:52,685 | INFO     | --------------------------------------------------
[2025-10-11 13:12:37] 2025-10-11 13:11:52,685 | INFO     | 
[2025-10-11 13:12:37] 2025-10-11 13:11:52,686 | INFO     | executing command: ls -lF /var/lib/boinc/slots/23
[2025-10-11 13:12:37] 2025-10-11 13:11:52,720 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-11 13:12:37] 2025-10-11 13:11:52,720 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-11 13:12:37] 2025-10-11 13:11:52,721 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-11 13:12:37] 2025-10-11 13:11:52,721 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-11 13:12:37] 2025-10-11 13:11:52,721 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-11 13:12:37] 2025-10-11 13:11:52,721 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-11 13:12:37] 2025-10-11 13:11:52,721 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-11 13:12:37] 2025-10-11 13:11:52,721 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-11 13:12:37] 2025-10-11 13:11:52,721 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-11 13:12:37] 2025-10-11 13:11:52,722 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-11 13:12:37] 2025-10-11 13:11:52,722 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-11 13:12:37] 2025-10-11 13:11:52,722 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-11 13:12:37] 2025-10-11 13:11:52,722 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-11 13:12:37] 2025-10-11 13:11:52,722 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-11 13:12:37] 2025-10-11 13:11:52,722 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-11 13:12:37] 2025-10-11 13:11:52,722 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-11 13:12:37] 2025-10-11 13:11:52,722 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-11 13:12:37] 2025-10-11 13:11:52,723 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-11 13:12:37] 2025-10-11 13:11:52,723 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-11 13:12:37] 2025-10-11 13:11:52,723 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-11 13:12:37] 2025-10-11 13:11:52,723 | INFO     | job 6838063577 has completed (purged errors)
[2025-10-11 13:12:37] 2025-10-11 13:11:52,724 | INFO     | overall cleanup function is called
[2025-10-11 13:12:37] 2025-10-11 13:11:53,734 | INFO     | --- collectZombieJob: --- 10, [172218]
[2025-10-11 13:12:37] 2025-10-11 13:11:53,735 | INFO     | zombie collector waiting for pid 172218
[2025-10-11 13:12:37] 2025-10-11 13:11:53,735 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-11 13:12:37] 2025-10-11 13:11:53,735 | INFO     | collected zombie processes
[2025-10-11 13:12:37] 2025-10-11 13:11:53,735 | INFO     | will attempt to kill all subprocesses of pid=172218
[2025-10-11 13:12:37] 2025-10-11 13:11:54,587 | INFO     | process IDs to be killed: [172218] (in reverse order)
[2025-10-11 13:12:37] 2025-10-11 13:11:54,872 | WARNING  | found no corresponding commands to process id(s)
[2025-10-11 13:12:37] 2025-10-11 13:11:54,872 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-11 13:12:37] 2025-10-11 13:11:54,900 | INFO     | did not find any defunct processes belonging to 172218
[2025-10-11 13:12:37] 2025-10-11 13:11:54,925 | INFO     | did not find any defunct processes belonging to 172218
[2025-10-11 13:12:37] 2025-10-11 13:11:54,925 | INFO     | ready for new job
[2025-10-11 13:12:37] 2025-10-11 13:11:54,926 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-11 13:12:37] 2025-10-11 13:11:54,929 | INFO     | ***************************************
[2025-10-11 13:12:37] 2025-10-11 13:11:54,929 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-11 13:12:37] 2025-10-11 13:11:54,929 | INFO     | ***************************************
[2025-10-11 13:12:37] 2025-10-11 13:11:54,929 | INFO     | 
[2025-10-11 13:12:37] 2025-10-11 13:11:54,966 | INFO     | architecture information:
[2025-10-11 13:12:37] 2025-10-11 13:11:54,967 | INFO     | executing command: cat /etc/os-release
[2025-10-11 13:12:37] 2025-10-11 13:11:54,999 | INFO     | cat /etc/os-release:
[2025-10-11 13:12:37] NAME="CentOS Linux"
[2025-10-11 13:12:37] VERSION="7 (Core)"
[2025-10-11 13:12:37] ID="centos"
[2025-10-11 13:12:37] ID_LIKE="rhel fedora"
[2025-10-11 13:12:37] VERSION_ID="7"
[2025-10-11 13:12:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-11 13:12:37] ANSI_COLOR="0;31"
[2025-10-11 13:12:37] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-11 13:12:37] HOME_URL="https://www.centos.org/"
[2025-10-11 13:12:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-11 13:12:37] 
[2025-10-11 13:12:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-11 13:12:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-11 13:12:37] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-11 13:12:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-11 13:12:37] 
[2025-10-11 13:12:37] 2025-10-11 13:11:54,999 | INFO     | ***************************************
[2025-10-11 13:12:37] 2025-10-11 13:11:55,503 | INFO     | executing command: df -mP /var/lib/boinc/slots/23
[2025-10-11 13:12:37] 2025-10-11 13:11:55,533 | INFO     | sufficient remaining disk space (1724553101312 B)
[2025-10-11 13:12:37] 2025-10-11 13:11:55,533 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-11 13:12:37] 2025-10-11 13:11:55,533 | INFO     | current server update state: UPDATING_FINAL
[2025-10-11 13:12:37] 2025-10-11 13:11:55,533 | INFO     | update_server=False
[2025-10-11 13:12:37] 2025-10-11 13:11:55,534 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-11 13:12:37] 2025-10-11 13:11:55,534 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-11 13:12:37] 2025-10-11 13:11:55,594 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-11 13:12:37] 2025-10-11 13:11:55,837 | INFO     | all payload control threads have been joined
[2025-10-11 13:12:37] 2025-10-11 13:11:55,910 | INFO     | all data control threads have been joined
[2025-10-11 13:12:37] 2025-10-11 13:11:56,002 | INFO     | all job control threads have been joined
[2025-10-11 13:12:37] 2025-10-11 13:11:56,178 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-11 13:12:37] 2025-10-11 13:11:56,179 | INFO     | aborting loop
[2025-10-11 13:12:37] 2025-10-11 13:11:56,539 | INFO     | [job] retrieve thread has finished
[2025-10-11 13:12:37] 2025-10-11 13:11:56,682 | INFO     | [payload] execute_payloads thread has finished
[2025-10-11 13:12:37] 2025-10-11 13:11:56,843 | INFO     | [payload] control thread has finished
[2025-10-11 13:12:37] 2025-10-11 13:11:56,914 | INFO     | [data] control thread has finished
[2025-10-11 13:12:37] 2025-10-11 13:11:57,006 | INFO     | [job] control thread has finished
[2025-10-11 13:12:37] 2025-10-11 13:11:57,182 | INFO     | [job] job monitor thread has finished
[2025-10-11 13:12:37] 2025-10-11 13:11:57,214 | INFO     | [payload] failed_post thread has finished
[2025-10-11 13:12:37] 2025-10-11 13:11:57,282 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-11 13:12:37] 2025-10-11 13:11:57,312 | INFO     | [job] validate thread has finished
[2025-10-11 13:12:37] 2025-10-11 13:11:57,450 | INFO     | [job] create_data_payload thread has finished
[2025-10-11 13:12:37] 2025-10-11 13:11:57,540 | INFO     | [data] copytool_out thread has finished
[2025-10-11 13:12:37] 2025-10-11 13:11:57,686 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-11 13:12:37] 2025-10-11 13:11:57,890 | INFO     | [payload] validate_pre thread has finished
[2025-10-11 13:12:37] 2025-10-11 13:11:57,923 | INFO     | [payload] validate_post thread has finished
[2025-10-11 13:12:37] 2025-10-11 13:11:57,970 | INFO     | [data] copytool_in thread has finished
[2025-10-11 13:12:37] 2025-10-11 13:11:58,694 | INFO     | [job] queue monitor thread has finished
[2025-10-11 13:12:37] 2025-10-11 13:11:59,598 | INFO     | [data] queue_monitor thread has finished
[2025-10-11 13:12:37] 2025-10-11 13:12:25,317 | INFO     | PID=164039 has CPU usage=9.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-11 13:12:37] 2025-10-11 13:12:25,317 | INFO     | .. there are 17 such processes running
[2025-10-11 13:12:37] 2025-10-11 13:12:25,318 | INFO     | found 0 job(s) in 20 queues
[2025-10-11 13:12:37] 2025-10-11 13:12:25,318 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-11 13:12:37] 2025-10-11 13:12:25,318 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-11 13:12:37] 2025-10-11 13:12:31,542 | INFO     | [monitor] cgroup control has ended
[2025-10-11 13:12:37] 2025-10-11 13:12:31,938 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140604771174208)>', '<ExcThread(monitor, started 140604193363712)>']
[2025-10-11 13:12:37] 2025-10-11 13:12:32,346 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-11 13:12:37] 2025-10-11 13:12:32,347 | INFO     | [monitor] control thread has ended
[2025-10-11 13:12:37] 2025-10-11 13:12:36,962 | INFO     | all workflow threads have been joined
[2025-10-11 13:12:37] 2025-10-11 13:12:36,963 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-11 13:12:37] 2025-10-11 13:12:36,963 | INFO     | traces error code: 0
[2025-10-11 13:12:37] 2025-10-11 13:12:36,964 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-11 13:12:37] 2025-10-11 13:12:37,155 [wrapper] ==== pilot stdout END ====
[2025-10-11 13:12:37] 2025-10-11 13:12:37,158 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-11 13:12:37] 2025-10-11 13:12:37,162 [wrapper] pilotpid: 164039
[2025-10-11 13:12:37] 2025-10-11 13:12:37,166 [wrapper] Pilot exit status: 0
[2025-10-11 13:12:37] 2025-10-11 13:12:37,181 [wrapper] pandaids: 6838063577
[2025-10-11 13:12:37] 2025-10-11 13:12:37,354 [wrapper] cleanup supervisor_pilot  551808 164040
[2025-10-11 13:12:37] 2025-10-11 13:12:37,358 [wrapper] Test setup, not cleaning
[2025-10-11 13:12:37] 2025-10-11 13:12:37,362 [wrapper] apfmon messages muted
[2025-10-11 13:12:37] 2025-10-11 13:12:37,366 [wrapper] ==== wrapper stdout END ====
[2025-10-11 13:12:37] 2025-10-11 13:12:37,369 [wrapper] ==== wrapper stderr END ====
[2025-10-11 13:12:37]  *** Error codes and diagnostics ***
[2025-10-11 13:12:37]     "exeErrorCode": 0,
[2025-10-11 13:12:37]     "exeErrorDiag": "",
[2025-10-11 13:12:37]     "pilotErrorCode": 0,
[2025-10-11 13:12:37]     "pilotErrorDiag": "",
[2025-10-11 13:12:37]  *** Listing of results directory ***
[2025-10-11 13:12:37] total 412852
[2025-10-11 13:12:37] -rw-r--r-- 1 boinc boinc    557409 Oct 11 03:42 pilot3.tar.gz
[2025-10-11 13:12:37] -rw-r--r-- 1 boinc boinc      5112 Oct 11 03:58 queuedata.json
[2025-10-11 13:12:37] -rwx------ 1 boinc boinc     36292 Oct 11 03:59 runpilot2-wrapper.sh
[2025-10-11 13:12:37] -rw-r--r-- 1 boinc boinc       100 Oct 11 12:23 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-11 13:12:37] -rwxr-xr-x 1 boinc boinc      7986 Oct 11 12:23 run_atlas
[2025-10-11 13:12:37] -rw-r--r-- 1 boinc boinc       105 Oct 11 12:23 job.xml
[2025-10-11 13:12:37] -rw-r--r-- 2 boinc boinc     15120 Oct 11 12:23 start_atlas.sh
[2025-10-11 13:12:37] drwxrwx--x 2 boinc boinc      4096 Oct 11 12:23 shared
[2025-10-11 13:12:37] -rw-r--r-- 2 boinc boinc    569682 Oct 11 12:23 input.tar.gz
[2025-10-11 13:12:37] -rw-r--r-- 1 boinc boinc      9396 Oct 11 12:23 init_data.xml
[2025-10-11 13:12:37] -rw-r--r-- 2 boinc boinc 221650956 Oct 11 12:23 EVNT.46676267._002030.pool.root.1
[2025-10-11 13:12:37] -rw-r--r-- 1 boinc boinc         0 Oct 11 12:23 boinc_setup_complete
[2025-10-11 13:12:37] -rw-r--r-- 1 boinc boinc         0 Oct 11 12:23 boinc_lockfile
[2025-10-11 13:12:37] -rw-r--r-- 1 boinc boinc      2550 Oct 11 12:23 pandaJob.out
[2025-10-11 13:12:37] -rw------- 1 boinc boinc    975504 Oct 11 12:23 agis_schedconf.cvmfs.json
[2025-10-11 13:12:37] -rw------- 1 boinc boinc   1560580 Oct 11 12:23 agis_ddmendpoints.agis.ALL.json
[2025-10-11 13:12:37] drwx------ 5 boinc boinc      4096 Oct 11 12:23 pilot3
[2025-10-11 13:12:37] -rw------- 1 boinc boinc 195595650 Oct 11 13:11 HITS.46676269._050454.pool.root.1
[2025-10-11 13:12:37] -rw-r--r-- 1 boinc boinc       530 Oct 11 13:11 boinc_task_state.xml
[2025-10-11 13:12:37] -rw------- 1 boinc boinc      1028 Oct 11 13:11 memory_monitor_summary.json
[2025-10-11 13:12:37] -rw------- 1 boinc boinc    364861 Oct 11 13:11 log.46676269._050454.job.log.tgz.1
[2025-10-11 13:12:37] -rw------- 1 boinc boinc      7742 Oct 11 13:11 heartbeat.json
[2025-10-11 13:12:37] -rw------- 1 boinc boinc        95 Oct 11 13:12 pilot_heartbeat.json
[2025-10-11 13:12:37] -rw-r--r-- 1 boinc boinc        27 Oct 11 13:12 wrapper_checkpoint.txt
[2025-10-11 13:12:37] -rw-r--r-- 1 boinc boinc      8192 Oct 11 13:12 boinc_mmap_file
[2025-10-11 13:12:37] -rw------- 1 boinc boinc      4826 Oct 11 13:12 pilotlog.txt
[2025-10-11 13:12:37] -rw------- 1 boinc boinc    434870 Oct 11 13:12 log.46676269._050454.job.log.1
[2025-10-11 13:12:37] -rw------- 1 boinc boinc       357 Oct 11 13:12 output.list
[2025-10-11 13:12:37] -rw-r--r-- 1 boinc boinc       620 Oct 11 13:12 runtime_log
[2025-10-11 13:12:37] -rw------- 1 boinc boinc    819200 Oct 11 13:12 result.tar.gz
[2025-10-11 13:12:37] -rw-r--r-- 1 boinc boinc      8672 Oct 11 13:12 runtime_log.err
[2025-10-11 13:12:37] -rw------- 1 boinc boinc       642 Oct 11 13:12 mSaNDmDwfR8n9Rq4apOajLDm4fhM0noT9bVof3QYDmp4QMDmhfWUVn.diag
[2025-10-11 13:12:37] -rw-r--r-- 1 boinc boinc     21990 Oct 11 13:12 stderr.txt
[2025-10-11 13:12:37] HITS file was successfully produced:
[2025-10-11 13:12:37] -rw------- 1 boinc boinc 195595650 Oct 11 13:11 shared/HITS.pool.root.1
[2025-10-11 13:12:37]  *** Contents of shared directory: ***
[2025-10-11 13:12:37] total 408856
[2025-10-11 13:12:37] -rw-r--r-- 2 boinc boinc     15120 Oct 11 12:23 start_atlas.sh
[2025-10-11 13:12:37] -rw-r--r-- 2 boinc boinc    569682 Oct 11 12:23 input.tar.gz
[2025-10-11 13:12:37] -rw-r--r-- 2 boinc boinc 221650956 Oct 11 12:23 ATLAS.root_0
[2025-10-11 13:12:37] -rw------- 1 boinc boinc 195595650 Oct 11 13:11 HITS.pool.root.1
[2025-10-11 13:12:37] -rw------- 1 boinc boinc    819200 Oct 11 13:12 result.tar.gz
13:12:39 (159279): run_atlas exited; CPU time 31052.846861
13:12:39 (159279): called boinc_finish(0)

</stderr_txt>
]]>

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