Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:32:40 (122293): wrapper (7.7.26015): starting
00:32:40 (122293): wrapper: running run_atlas (--nthreads 6)
[2025-10-12 00:32:40] Arguments: --nthreads 6
[2025-10-12 00:32:40] Threads: 6
[2025-10-12 00:32:40] Checking for CVMFS
[2025-10-12 00:32:40] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 00:32:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 00:32:40] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 00:32:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 00:32:40] 2.13.2.0 97517 52 50188 151599 3 57 16174367 81920001 0 130560 0 70000 99.974 5379 6852 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://147.213.204.101:3128 1
[2025-10-12 00:32:40] CVMFS is ok
[2025-10-12 00:32:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 00:32:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 00:32:40] Further information can be found at the LHC@home message board.
[2025-10-12 00:32:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 00:32:40] Checking for apptainer binary...
[2025-10-12 00:32:40] which: no apptainer in (/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/var/lib/snapd/snap/bin)
[2025-10-12 00:32:40] apptainer is not installed, using version from CVMFS
[2025-10-12 00:32:40] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 00:32:40] monitor-atlas.iep
[2025-10-12 00:32:40] apptainer works
[2025-10-12 00:32:40] Set ATHENA_PROC_NUMBER=6
[2025-10-12 00:32:40] Set ATHENA_CORE_NUMBER=6
[2025-10-12 00:32:40] Starting ATLAS job with PandaID=6838292492
[2025-10-12 00:32:40] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 01:24:13]  *** The last 200 lines of the pilot log: ***
[2025-10-12 01:24:13]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-12 01:24:13]  replicas=None
[2025-10-12 01:24:13]  scope=mc23_13p6TeV
[2025-10-12 01:24:13]  status=None
[2025-10-12 01:24:13]  status_code=0
[2025-10-12 01:24:13]  storage_token=
[2025-10-12 01:24:13]  surl=/var/lib/boinc/slots/2/PanDA_Pilot-6838292492/log.46676269._054931.job.log.tgz.1
[2025-10-12 01:24:13]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d9/44/log.46676269._054931.job.log.tgz.1
[2025-10-12 01:24:13]  workdir=None
[2025-10-12 01:24:13] ]
[2025-10-12 01:24:13] 2025-10-11 23:23:36,534 | INFO     | transferring file log.46676269._054931.job.log.tgz.1 from /var/lib/boinc/slots/2/PanDA_Pilot-6838292492/log.46676269._054931.job.log.tgz.1 to /var/lib/boinc/slots/
[2025-10-12 01:24:13] 2025-10-11 23:23:36,534 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/2/PanDA_Pilot-6838292492/log.46676269._054931.job.log.tgz.1 /var/lib/boinc/slots/2/log.46676269._054931.job
[2025-10-12 01:24:13] 2025-10-11 23:23:36,541 | INFO     | adding to output.list: log.46676269._054931.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d9/44/log.46676269._054931.job.log.tg
[2025-10-12 01:24:13] 2025-10-11 23:23:36,541 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 01:24:13] 2025-10-11 23:23:36,541 | INFO     | summary of transferred files:
[2025-10-12 01:24:13] 2025-10-11 23:23:36,541 | INFO     |  -- lfn=log.46676269._054931.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 01:24:13] 2025-10-11 23:23:36,541 | INFO     | stage-out finished correctly
[2025-10-12 01:24:13] 2025-10-11 23:23:37,258 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 01:24:13] 2025-10-11 23:23:37,301 | INFO     | PID=126616 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-12 01:24:13] 2025-10-11 23:23:37,490 | INFO     | job 6838292492 has state=finished
[2025-10-12 01:24:13] 2025-10-11 23:23:37,490 | INFO     | preparing for final server update for job 6838292492 in state='finished'
[2025-10-12 01:24:13] 2025-10-11 23:23:37,490 | INFO     | this job has now completed (state=finished)
[2025-10-12 01:24:13] 2025-10-11 23:23:37,490 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 01:24:13] 2025-10-11 23:23:37,490 | INFO     | log transfer has been attempted: DONE
[2025-10-12 01:24:13] 2025-10-11 23:23:37,490 | INFO     | job 6838292492 has finished - writing final server update
[2025-10-12 01:24:13] 2025-10-11 23:23:37,490 | INFO     | total number of processed events: 400 (read)
[2025-10-12 01:24:13] 2025-10-11 23:23:37,491 | INFO     | executing command: lscpu
[2025-10-12 01:24:13] 2025-10-11 23:23:37,498 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 01:24:13] 2025-10-11 23:23:37,639 | WARNING  | process 133157 can no longer be monitored (due to stat problems) - aborting
[2025-10-12 01:24:13] 2025-10-11 23:23:37,639 | INFO     | using path: /var/lib/boinc/slots/2/PanDA_Pilot-6838292492/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 01:24:13] 2025-10-11 23:23:37,670 | INFO     | number of running child processes to parent process 133157: 1
[2025-10-12 01:24:13] 2025-10-11 23:23:37,670 | INFO     | maximum number of monitored processes: 6
[2025-10-12 01:24:13] 2025-10-11 23:23:38,302 | INFO     | time since job start (3051s) is within the limit (172800.0s)
[2025-10-12 01:24:13] 2025-10-11 23:23:40,172 | INFO     | monitor loop #236: job 0:6838292492 is in state 'finished'
[2025-10-12 01:24:13] 2025-10-11 23:23:40,172 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 01:24:13] 2025-10-11 23:23:40,306 | INFO     | time since job start (3053s) is within the limit (172800.0s)
[2025-10-12 01:24:13] 2025-10-11 23:23:41,129 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-12 01:24:13] 2025-10-11 23:23:41,130 | INFO     | found 6 cores (6 cores per socket, 1 socket) , CPU MHz: 4300.120666666667
[2025-10-12 01:24:13] 2025-10-11 23:23:41,130 | INFO     | using path: /var/lib/boinc/slots/2/PanDA_Pilot-6838292492/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 01:24:13] 2025-10-11 23:23:41,130 | INFO     | extracted standard info from prmon json
[2025-10-12 01:24:13] 2025-10-11 23:23:41,130 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 01:24:13] 2025-10-11 23:23:41,130 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 01:24:13] 2025-10-11 23:23:41,131 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 01:24:13] 2025-10-11 23:23:41,131 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 01:24:13] 2025-10-11 23:23:41,131 | INFO     | fitting pss+swap vs Time
[2025-10-12 01:24:13] 2025-10-11 23:23:41,131 | INFO     | sum of square deviations: 24640462.0
[2025-10-12 01:24:13] 2025-10-11 23:23:41,131 | INFO     | sum of deviations: -2166066751.0
[2025-10-12 01:24:13] 2025-10-11 23:23:41,131 | INFO     | mean x: 1760223573.0
[2025-10-12 01:24:13] 2025-10-11 23:23:41,131 | INFO     | mean y: 2848292.069767442
[2025-10-12 01:24:13] 2025-10-11 23:23:41,131 | INFO     | -- intersect: 154738654617.52426
[2025-10-12 01:24:13] 2025-10-11 23:23:41,131 | INFO     | intersect: 154738654617.52426
[2025-10-12 01:24:13] 2025-10-11 23:23:41,131 | INFO     | chi2: 0.07622360357177786
[2025-10-12 01:24:13] 2025-10-11 23:23:41,132 | INFO     | -- intersect: 154738654617.52426
[2025-10-12 01:24:13] 2025-10-11 23:23:41,132 | INFO     | current memory leak: -87.91 B/s (using 43 data points, chi2=0.08)
[2025-10-12 01:24:13] 2025-10-11 23:23:41,132 | INFO     | could have reported an average CPU frequency of 4305 MHz (5 samples)
[2025-10-12 01:24:13] 2025-10-11 23:23:41,132 | INFO     | ..............................
[2025-10-12 01:24:13] 2025-10-11 23:23:41,132 | INFO     | . Timing measurements:
[2025-10-12 01:24:13] 2025-10-11 23:23:41,132 | INFO     | . get job = 0 s
[2025-10-12 01:24:13] 2025-10-11 23:23:41,132 | INFO     | . initial setup = 1 s
[2025-10-12 01:24:13] 2025-10-11 23:23:41,132 | INFO     | . payload setup = 3 s
[2025-10-12 01:24:13] 2025-10-11 23:23:41,132 | INFO     | . stage-in = 0 s
[2025-10-12 01:24:13] 2025-10-11 23:23:41,132 | INFO     | . payload execution = 3029 s
[2025-10-12 01:24:13] 2025-10-11 23:23:41,132 | INFO     | . stage-out = 0 s
[2025-10-12 01:24:13] 2025-10-11 23:23:41,132 | INFO     | . log creation = 0 s
[2025-10-12 01:24:13] 2025-10-11 23:23:41,132 | INFO     | ..............................
[2025-10-12 01:24:13] 2025-10-11 23:23:41,163 | INFO     | 
[2025-10-12 01:24:13] 2025-10-11 23:23:41,163 | INFO     | job summary report
[2025-10-12 01:24:13] 2025-10-11 23:23:41,163 | INFO     | --------------------------------------------------
[2025-10-12 01:24:13] 2025-10-11 23:23:41,163 | INFO     | PanDA job id: 6838292492
[2025-10-12 01:24:13] 2025-10-11 23:23:41,163 | INFO     | task id: 46676269
[2025-10-12 01:24:13] 2025-10-11 23:23:41,163 | INFO     | errors: (none)
[2025-10-12 01:24:13] 2025-10-11 23:23:41,163 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 01:24:13] 2025-10-11 23:23:41,163 | INFO     | pilot state: finished 
[2025-10-12 01:24:13] 2025-10-11 23:23:41,163 | INFO     | transexitcode: 0
[2025-10-12 01:24:13] 2025-10-11 23:23:41,163 | INFO     | exeerrorcode: 0
[2025-10-12 01:24:13] 2025-10-11 23:23:41,163 | INFO     | exeerrordiag: 
[2025-10-12 01:24:13] 2025-10-11 23:23:41,163 | INFO     | exitcode: 0
[2025-10-12 01:24:13] 2025-10-11 23:23:41,163 | INFO     | exitmsg: OK
[2025-10-12 01:24:13] 2025-10-11 23:23:41,163 | INFO     | cpuconsumptiontime: 16927 s
[2025-10-12 01:24:13] 2025-10-11 23:23:41,163 | INFO     | nevents: 400
[2025-10-12 01:24:13] 2025-10-11 23:23:41,163 | INFO     | neventsw: 0
[2025-10-12 01:24:13] 2025-10-11 23:23:41,163 | INFO     | pid: 133157
[2025-10-12 01:24:13] 2025-10-11 23:23:41,163 | INFO     | pgrp: 133157
[2025-10-12 01:24:13] 2025-10-11 23:23:41,163 | INFO     | corecount: 6
[2025-10-12 01:24:13] 2025-10-11 23:23:41,163 | INFO     | event service: False
[2025-10-12 01:24:13] 2025-10-11 23:23:41,163 | INFO     | sizes: {0: 2348855, 2: 2349117, 11: 2349145, 3035: 2374602, 3036: 2383655, 3037: 2383655, 3041: 2384009}
[2025-10-12 01:24:13] 2025-10-11 23:23:41,163 | INFO     | --------------------------------------------------
[2025-10-12 01:24:13] 2025-10-11 23:23:41,163 | INFO     | 
[2025-10-12 01:24:13] 2025-10-11 23:23:41,163 | INFO     | executing command: ls -lF /var/lib/boinc/slots/2
[2025-10-12 01:24:13] 2025-10-11 23:23:41,171 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 01:24:13] 2025-10-11 23:23:41,171 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 01:24:13] 2025-10-11 23:23:41,171 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 01:24:13] 2025-10-11 23:23:41,171 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 01:24:13] 2025-10-11 23:23:41,172 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 01:24:13] 2025-10-11 23:23:41,172 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 01:24:13] 2025-10-11 23:23:41,172 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 01:24:13] 2025-10-11 23:23:41,172 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 01:24:13] 2025-10-11 23:23:41,172 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 01:24:13] 2025-10-11 23:23:41,172 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 01:24:13] 2025-10-11 23:23:41,172 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 01:24:13] 2025-10-11 23:23:41,172 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 01:24:13] 2025-10-11 23:23:41,172 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 01:24:13] 2025-10-11 23:23:41,172 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 01:24:13] 2025-10-11 23:23:41,172 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 01:24:13] 2025-10-11 23:23:41,172 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 01:24:13] 2025-10-11 23:23:41,172 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 01:24:13] 2025-10-11 23:23:41,172 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 01:24:13] 2025-10-11 23:23:41,172 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 01:24:13] 2025-10-11 23:23:41,172 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 01:24:13] 2025-10-11 23:23:41,172 | INFO     | job 6838292492 has completed (purged errors)
[2025-10-12 01:24:13] 2025-10-11 23:23:41,172 | INFO     | overall cleanup function is called
[2025-10-12 01:24:13] 2025-10-11 23:23:42,178 | INFO     | --- collectZombieJob: --- 10, [133157]
[2025-10-12 01:24:13] 2025-10-11 23:23:42,178 | INFO     | zombie collector waiting for pid 133157
[2025-10-12 01:24:13] 2025-10-11 23:23:42,178 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 01:24:13] 2025-10-11 23:23:42,178 | INFO     | collected zombie processes
[2025-10-12 01:24:13] 2025-10-11 23:23:42,178 | INFO     | will attempt to kill all subprocesses of pid=133157
[2025-10-12 01:24:13] 2025-10-11 23:23:42,210 | INFO     | process IDs to be killed: [133157] (in reverse order)
[2025-10-12 01:24:13] 2025-10-11 23:23:42,226 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 01:24:13] 2025-10-11 23:23:42,226 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 01:24:13] 2025-10-11 23:23:42,227 | INFO     | did not find any defunct processes belonging to 133157
[2025-10-12 01:24:13] 2025-10-11 23:23:42,228 | INFO     | did not find any defunct processes belonging to 133157
[2025-10-12 01:24:13] 2025-10-11 23:23:42,228 | INFO     | ready for new job
[2025-10-12 01:24:13] 2025-10-11 23:23:42,228 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 01:24:13] 2025-10-11 23:23:42,229 | INFO     | ***************************************
[2025-10-12 01:24:13] 2025-10-11 23:23:42,229 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 01:24:13] 2025-10-11 23:23:42,229 | INFO     | ***************************************
[2025-10-12 01:24:13] 2025-10-11 23:23:42,229 | INFO     | 
[2025-10-12 01:24:13] 2025-10-11 23:23:42,229 | INFO     | architecture information:
[2025-10-12 01:24:13] 2025-10-11 23:23:42,229 | INFO     | executing command: cat /etc/os-release
[2025-10-12 01:24:13] 2025-10-11 23:23:42,235 | INFO     | cat /etc/os-release:
[2025-10-12 01:24:13] NAME="CentOS Linux"
[2025-10-12 01:24:13] VERSION="7 (Core)"
[2025-10-12 01:24:13] ID="centos"
[2025-10-12 01:24:13] ID_LIKE="rhel fedora"
[2025-10-12 01:24:13] VERSION_ID="7"
[2025-10-12 01:24:13] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 01:24:13] ANSI_COLOR="0;31"
[2025-10-12 01:24:13] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 01:24:13] HOME_URL="https://www.centos.org/"
[2025-10-12 01:24:13] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 01:24:13] 
[2025-10-12 01:24:13] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 01:24:13] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 01:24:13] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 01:24:13] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 01:24:13] 
[2025-10-12 01:24:13] 2025-10-11 23:23:42,235 | INFO     | ***************************************
[2025-10-12 01:24:13] 2025-10-11 23:23:42,737 | INFO     | executing command: df -mP /var/lib/boinc/slots/2
[2025-10-12 01:24:13] 2025-10-11 23:23:42,743 | INFO     | sufficient remaining disk space (871165329408 B)
[2025-10-12 01:24:13] 2025-10-11 23:23:42,743 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 01:24:13] 2025-10-11 23:23:42,743 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 01:24:13] 2025-10-11 23:23:42,743 | INFO     | update_server=False
[2025-10-12 01:24:13] 2025-10-11 23:23:42,743 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 01:24:13] 2025-10-11 23:23:42,744 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 01:24:13] 2025-10-11 23:23:42,744 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 01:24:13] 2025-10-11 23:23:42,935 | INFO     | all data control threads have been joined
[2025-10-12 01:24:13] 2025-10-11 23:23:43,292 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 01:24:13] 2025-10-11 23:23:43,680 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 01:24:13] 2025-10-11 23:23:43,680 | INFO     | aborting loop
[2025-10-12 01:24:13] 2025-10-11 23:23:43,718 | INFO     | all payload control threads have been joined
[2025-10-12 01:24:13] 2025-10-11 23:23:43,749 | INFO     | [job] retrieve thread has finished
[2025-10-12 01:24:13] 2025-10-11 23:23:43,749 | INFO     | [job] queue monitor thread has finished
[2025-10-12 01:24:13] 2025-10-11 23:23:43,805 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 01:24:13] 2025-10-11 23:23:43,940 | INFO     | [data] control thread has finished
[2025-10-12 01:24:13] 2025-10-11 23:23:44,020 | INFO     | all job control threads have been joined
[2025-10-12 01:24:13] 2025-10-11 23:23:44,372 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 01:24:13] 2025-10-11 23:23:44,394 | INFO     | [data] copytool_in thread has finished
[2025-10-12 01:24:13] 2025-10-11 23:23:44,686 | INFO     | [job] job monitor thread has finished
[2025-10-12 01:24:13] 2025-10-11 23:23:44,722 | INFO     | [payload] failed_post thread has finished
[2025-10-12 01:24:13] 2025-10-11 23:23:44,723 | INFO     | [payload] control thread has finished
[2025-10-12 01:24:13] 2025-10-11 23:23:44,749 | INFO     | [data] copytool_out thread has finished
[2025-10-12 01:24:13] 2025-10-11 23:23:45,025 | INFO     | [job] control thread has finished
[2025-10-12 01:24:13] 2025-10-11 23:23:45,093 | INFO     | [job] validate thread has finished
[2025-10-12 01:24:13] 2025-10-11 23:23:45,191 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 01:24:13] 2025-10-11 23:23:45,280 | INFO     | [payload] validate_post thread has finished
[2025-10-12 01:24:13] 2025-10-11 23:23:47,298 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 01:24:13] 2025-10-11 23:23:51,886 | INFO     | [monitor] cgroup control has ended
[2025-10-12 01:24:13] 2025-10-11 23:23:53,632 | INFO     | job.realtimelogging is not enabled
[2025-10-12 01:24:13] 2025-10-11 23:23:54,638 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 01:24:13] 2025-10-11 23:23:56,333 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139777585063744)>', '<ExcThread(monitor, started 139776816572160)>']
[2025-10-12 01:24:13] 2025-10-11 23:24:01,358 | INFO     | all workflow threads have been joined
[2025-10-12 01:24:13] 2025-10-11 23:24:01,358 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 01:24:13] 2025-10-11 23:24:01,358 | INFO     | traces error code: 0
[2025-10-12 01:24:13] 2025-10-11 23:24:01,358 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 01:24:13] 2025-10-11 23:24:13,441 | INFO     | PID=126616 has CPU usage=0.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-12 01:24:13] 2025-10-11 23:24:13,441 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 01:24:13] 2025-10-11 23:24:13,441 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 01:24:13] 2025-10-11 23:24:13,441 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 01:24:13] 2025-10-11 23:24:13,441 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 01:24:13] 2025-10-11 23:24:13,441 | INFO     | [monitor] control thread has ended
[2025-10-12 01:24:13] 2025-10-11 23:24:13,483 [wrapper] ==== pilot stdout END ====
[2025-10-12 01:24:13] 2025-10-11 23:24:13,484 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 01:24:13] 2025-10-11 23:24:13,485 [wrapper] pilotpid: 126616
[2025-10-12 01:24:13] 2025-10-11 23:24:13,487 [wrapper] Pilot exit status: 0
[2025-10-12 01:24:13] 2025-10-11 23:24:13,490 [wrapper] pandaids: 6838292492
[2025-10-12 01:24:13] 2025-10-11 23:24:13,499 [wrapper] cleanup supervisor_pilot  144521 126617
[2025-10-12 01:24:13] 2025-10-11 23:24:13,501 [wrapper] Test setup, not cleaning
[2025-10-12 01:24:13] 2025-10-11 23:24:13,502 [wrapper] apfmon messages muted
[2025-10-12 01:24:13] 2025-10-11 23:24:13,503 [wrapper] ==== wrapper stdout END ====
[2025-10-12 01:24:13] 2025-10-11 23:24:13,504 [wrapper] ==== wrapper stderr END ====
[2025-10-12 01:24:13]  *** Error codes and diagnostics ***
[2025-10-12 01:24:13]     "exeErrorCode": 0,
[2025-10-12 01:24:13]     "exeErrorDiag": "",
[2025-10-12 01:24:13]     "pilotErrorCode": 0,
[2025-10-12 01:24:13]     "pilotErrorDiag": "",
[2025-10-12 01:24:13]  *** Listing of results directory ***
[2025-10-12 01:24:13] total 415228
[2025-10-12 01:24:13] -rw-r--r-- 1 boinc boinc    557409 Oct 11 11:03 pilot3.tar.gz
[2025-10-12 01:24:13] -rw-r--r-- 1 boinc boinc      5112 Oct 11 11:08 queuedata.json
[2025-10-12 01:24:13] -rwx------ 1 boinc boinc     36292 Oct 11 11:10 runpilot2-wrapper.sh
[2025-10-12 01:24:13] -rw-r--r-- 1 boinc boinc       100 Oct 12 00:32 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 01:24:13] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 00:32 run_atlas
[2025-10-12 01:24:13] -rw-r--r-- 1 boinc boinc       105 Oct 12 00:32 job.xml
[2025-10-12 01:24:13] -rw-r--r-- 1 boinc boinc      6549 Oct 12 00:32 init_data.xml
[2025-10-12 01:24:13] -rw-r--r-- 2 boinc boinc 219133801 Oct 12 00:32 EVNT.46676267._002203.pool.root.1
[2025-10-12 01:24:13] -rw-r--r-- 2 boinc boinc     15120 Oct 12 00:32 start_atlas.sh
[2025-10-12 01:24:13] drwxrwx--x 2 boinc boinc        68 Oct 12 00:32 shared
[2025-10-12 01:24:13] -rw-r--r-- 2 boinc boinc    569683 Oct 12 00:32 input.tar.gz
[2025-10-12 01:24:13] -rw-r--r-- 1 boinc boinc         0 Oct 12 00:32 boinc_lockfile
[2025-10-12 01:24:13] -rw-r--r-- 1 boinc boinc      2549 Oct 12 00:32 pandaJob.out
[2025-10-12 01:24:13] -rw------- 1 boinc boinc    975520 Oct 12 00:32 agis_schedconf.cvmfs.json
[2025-10-12 01:24:13] -rw------- 1 boinc boinc   1560580 Oct 12 00:32 agis_ddmendpoints.agis.ALL.json
[2025-10-12 01:24:13] drwx------ 5 boinc boinc      4096 Oct 12 00:32 pilot3
[2025-10-12 01:24:13] -rw------- 1 boinc boinc 200714050 Oct 12 01:23 HITS.46676269._054931.pool.root.1
[2025-10-12 01:24:13] -rw------- 1 boinc boinc      1007 Oct 12 01:23 memory_monitor_summary.json
[2025-10-12 01:24:13] -rw------- 1 boinc boinc    258425 Oct 12 01:23 log.46676269._054931.job.log.tgz.1
[2025-10-12 01:24:13] -rw-r--r-- 1 boinc boinc       529 Oct 12 01:23 boinc_task_state.xml
[2025-10-12 01:24:13] -rw------- 1 boinc boinc      7774 Oct 12 01:23 heartbeat.json
[2025-10-12 01:24:13] -rw-r--r-- 1 boinc boinc      8192 Oct 12 01:24 boinc_mmap_file
[2025-10-12 01:24:13] -rw-r--r-- 1 boinc boinc        27 Oct 12 01:24 wrapper_checkpoint.txt
[2025-10-12 01:24:13] -rw------- 1 boinc boinc        95 Oct 12 01:24 pilot_heartbeat.json
[2025-10-12 01:24:13] -rw------- 1 boinc boinc       746 Oct 12 01:24 pilotlog.txt
[2025-10-12 01:24:13] -rw------- 1 boinc boinc    466947 Oct 12 01:24 log.46676269._054931.job.log.1
[2025-10-12 01:24:13] -rw------- 1 boinc boinc       357 Oct 12 01:24 output.list
[2025-10-12 01:24:13] -rw-r--r-- 1 boinc boinc       620 Oct 12 01:24 runtime_log
[2025-10-12 01:24:13] -rw------- 1 boinc boinc    747520 Oct 12 01:24 result.tar.gz
[2025-10-12 01:24:13] -rw-r--r-- 1 boinc boinc      8716 Oct 12 01:24 runtime_log.err
[2025-10-12 01:24:13] -rw------- 1 boinc boinc       654 Oct 12 01:24 1iMMDmAnkR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmFzfNDmbpgyYm.diag
[2025-10-12 01:24:13] -rw-r--r-- 1 boinc boinc     22080 Oct 12 01:24 stderr.txt
[2025-10-12 01:24:13] HITS file was successfully produced:
[2025-10-12 01:24:13] -rw------- 1 boinc boinc 200714050 Oct 12 01:23 shared/HITS.pool.root.1
[2025-10-12 01:24:13]  *** Contents of shared directory: ***
[2025-10-12 01:24:13] total 411320
[2025-10-12 01:24:13] -rw-r--r-- 2 boinc boinc 219133801 Oct 12 00:32 ATLAS.root_0
[2025-10-12 01:24:13] -rw-r--r-- 2 boinc boinc     15120 Oct 12 00:32 start_atlas.sh
[2025-10-12 01:24:13] -rw-r--r-- 2 boinc boinc    569683 Oct 12 00:32 input.tar.gz
[2025-10-12 01:24:13] -rw------- 1 boinc boinc 200714050 Oct 12 01:23 HITS.pool.root.1
[2025-10-12 01:24:13] -rw------- 1 boinc boinc    747520 Oct 12 01:24 result.tar.gz
01:24:15 (122293): run_atlas exited; CPU time 16940.346244
01:24:15 (122293): called boinc_finish(0)

</stderr_txt>
]]>

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