Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
07:35:45 (3828750): wrapper (7.7.26015): starting
07:35:45 (3828750): wrapper: running run_atlas (--nthreads 12)
[2025-10-11 07:35:45] Arguments: --nthreads 12
[2025-10-11 07:35:45] Threads: 12
[2025-10-11 07:35:45] Checking for CVMFS
[2025-10-11 07:35:45] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 07:35:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 07:35:45] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 07:35:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 07:35:46] 2.13.2.0 135553 2701 115132 151583 0 233 30658511 32503809 8448 16776704 0 44875245 99.969 3047882 51256 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-11 07:35:46] CVMFS is ok
[2025-10-11 07:35:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 07:35:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 07:35:46] Further information can be found at the LHC@home message board.
[2025-10-11 07:35:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 07:35:46] Checking for apptainer binary...
[2025-10-11 07:35:46] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 07:35:46] Running /usr/bin/apptainer --version
[2025-10-11 07:35:46] apptainer version 1.4.3-1.el9
[2025-10-11 07:35:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 07:35:46] c8-7-2.aglt2.org
[2025-10-11 07:35:46] apptainer works
[2025-10-11 07:35:46] Set ATHENA_PROC_NUMBER=12
[2025-10-11 07:35:46] Set ATHENA_CORE_NUMBER=12
[2025-10-11 07:35:46] Starting ATLAS job with PandaID=6837707023
[2025-10-11 07:35:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-11 08:05:27]  *** The last 200 lines of the pilot log: ***
[2025-10-11 08:05:27]  status_code=0
[2025-10-11 08:05:27]  storage_token=
[2025-10-11 08:05:27]  surl=/tmp/boinchome/slots/5/PanDA_Pilot-6837707023/log.46676269._043288.job.log.tgz.1
[2025-10-11 08:05:27]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/5a/f0/log.46676269._043288.job.log.tgz.1
[2025-10-11 08:05:27]  workdir=None
[2025-10-11 08:05:27] ]
[2025-10-11 08:05:27] 2025-10-11 12:04:46,510 | INFO     | transferring file log.46676269._043288.job.log.tgz.1 from /tmp/boinchome/slots/5/PanDA_Pilot-6837707023/log.46676269._043288.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-11 08:05:27] 2025-10-11 12:04:46,510 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/5/PanDA_Pilot-6837707023/log.46676269._043288.job.log.tgz.1 /tmp/boinchome/slots/5/log.46676269._043288.job
[2025-10-11 08:05:27] 2025-10-11 12:04:46,526 | INFO     | adding to output.list: log.46676269._043288.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/5a/f0/log.46676269._043288.job.log.tg
[2025-10-11 08:05:27] 2025-10-11 12:04:46,526 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-11 08:05:27] 2025-10-11 12:04:46,527 | INFO     | summary of transferred files:
[2025-10-11 08:05:27] 2025-10-11 12:04:46,527 | INFO     |  -- lfn=log.46676269._043288.job.log.tgz.1, status_code=0, status=transferred
[2025-10-11 08:05:27] 2025-10-11 12:04:46,527 | INFO     | stage-out finished correctly
[2025-10-11 08:05:27] 2025-10-11 12:04:47,383 | INFO     | time since job start (1730s) is within the limit (172800.0s)
[2025-10-11 08:05:27] 2025-10-11 12:04:48,304 | INFO     | monitor loop #131: job 0:6837707023 is in state 'finished'
[2025-10-11 08:05:27] 2025-10-11 12:04:48,304 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 08:05:27] 2025-10-11 12:04:48,999 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-11 08:05:27] 2025-10-11 12:04:49,384 | INFO     | time since job start (1732s) is within the limit (172800.0s)
[2025-10-11 08:05:27] 2025-10-11 12:04:50,445 | INFO     | job 6837707023 has state=finished
[2025-10-11 08:05:27] 2025-10-11 12:04:50,446 | INFO     | preparing for final server update for job 6837707023 in state='finished'
[2025-10-11 08:05:27] 2025-10-11 12:04:50,446 | INFO     | this job has now completed (state=finished)
[2025-10-11 08:05:27] 2025-10-11 12:04:50,446 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-11 08:05:27] 2025-10-11 12:04:50,446 | INFO     | log transfer has been attempted: DONE
[2025-10-11 08:05:27] 2025-10-11 12:04:50,446 | INFO     | job 6837707023 has finished - writing final server update
[2025-10-11 08:05:27] 2025-10-11 12:04:50,446 | INFO     | total number of processed events: 400 (read)
[2025-10-11 08:05:27] 2025-10-11 12:04:50,447 | INFO     | executing command: lscpu
[2025-10-11 08:05:27] 2025-10-11 12:04:50,507 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-11 08:05:27] 2025-10-11 12:04:50,807 | INFO     | monitor loop #132: job 0:6837707023 is in state 'finished'
[2025-10-11 08:05:27] 2025-10-11 12:04:50,807 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 08:05:27] 2025-10-11 12:04:51,389 | INFO     | time since job start (1734s) is within the limit (172800.0s)
[2025-10-11 08:05:27] 2025-10-11 12:04:53,309 | INFO     | monitor loop #133: job 0:6837707023 is in state 'finished'
[2025-10-11 08:05:27] 2025-10-11 12:04:53,310 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 08:05:27] 2025-10-11 12:04:53,394 | INFO     | time since job start (1736s) is within the limit (172800.0s)
[2025-10-11 08:05:27] 2025-10-11 12:04:53,876 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-11 08:05:27] 2025-10-11 12:04:53,892 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3576.7062265624954
[2025-10-11 08:05:27] 2025-10-11 12:04:53,900 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6837707023/memory_monitor_summary.json (trf name=prmon)
[2025-10-11 08:05:27] 2025-10-11 12:04:53,900 | INFO     | extracted standard info from prmon json
[2025-10-11 08:05:27] 2025-10-11 12:04:53,900 | INFO     | extracted standard memory fields from prmon json
[2025-10-11 08:05:27] 2025-10-11 12:04:53,900 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-11 08:05:27] 2025-10-11 12:04:53,900 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-11 08:05:27] 2025-10-11 12:04:53,900 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-11 08:05:27] 2025-10-11 12:04:53,901 | INFO     | fitting pss+swap vs Time
[2025-10-11 08:05:27] 2025-10-11 12:04:53,901 | INFO     | sum of square deviations: 2865170.0
[2025-10-11 08:05:27] 2025-10-11 12:04:53,901 | INFO     | sum of deviations: 54827227.0
[2025-10-11 08:05:27] 2025-10-11 12:04:53,901 | INFO     | mean x: 1760183496.0
[2025-10-11 08:05:27] 2025-10-11 12:04:53,901 | INFO     | mean y: 2436984.8571428573
[2025-10-11 08:05:27] 2025-10-11 12:04:53,901 | INFO     | -- intersect: -33680025171.61022
[2025-10-11 08:05:27] 2025-10-11 12:04:53,901 | INFO     | intersect: -33680025171.61022
[2025-10-11 08:05:27] 2025-10-11 12:04:53,901 | INFO     | chi2: 0.00031790020790074423
[2025-10-11 08:05:27] 2025-10-11 12:04:53,901 | INFO     | -- intersect: -33680025171.61022
[2025-10-11 08:05:27] 2025-10-11 12:04:53,901 | INFO     | current memory leak: 19.14 B/s (using 21 data points, chi2=0.00)
[2025-10-11 08:05:27] 2025-10-11 12:04:53,901 | INFO     | could have reported an average CPU frequency of 3580 MHz (4 samples)
[2025-10-11 08:05:27] 2025-10-11 12:04:53,901 | INFO     | ..............................
[2025-10-11 08:05:27] 2025-10-11 12:04:53,901 | INFO     | . Timing measurements:
[2025-10-11 08:05:27] 2025-10-11 12:04:53,902 | INFO     | . get job = 0 s
[2025-10-11 08:05:27] 2025-10-11 12:04:53,902 | INFO     | . initial setup = 4 s
[2025-10-11 08:05:27] 2025-10-11 12:04:53,902 | INFO     | . payload setup = 4 s
[2025-10-11 08:05:27] 2025-10-11 12:04:53,902 | INFO     | . stage-in = 0 s
[2025-10-11 08:05:27] 2025-10-11 12:04:53,902 | INFO     | . payload execution = 1705 s
[2025-10-11 08:05:27] 2025-10-11 12:04:53,902 | INFO     | . stage-out = 0 s
[2025-10-11 08:05:27] 2025-10-11 12:04:53,902 | INFO     | . log creation = 0 s
[2025-10-11 08:05:27] 2025-10-11 12:04:53,902 | INFO     | ..............................
[2025-10-11 08:05:27] 2025-10-11 12:04:53,932 | INFO     | 
[2025-10-11 08:05:27] 2025-10-11 12:04:53,932 | INFO     | job summary report
[2025-10-11 08:05:27] 2025-10-11 12:04:53,932 | INFO     | --------------------------------------------------
[2025-10-11 08:05:27] 2025-10-11 12:04:53,932 | INFO     | PanDA job id: 6837707023
[2025-10-11 08:05:27] 2025-10-11 12:04:53,932 | INFO     | task id: 46676269
[2025-10-11 08:05:27] 2025-10-11 12:04:53,932 | INFO     | errors: (none)
[2025-10-11 08:05:27] 2025-10-11 12:04:53,932 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-11 08:05:27] 2025-10-11 12:04:53,932 | INFO     | pilot state: finished 
[2025-10-11 08:05:27] 2025-10-11 12:04:53,932 | INFO     | transexitcode: 0
[2025-10-11 08:05:27] 2025-10-11 12:04:53,932 | INFO     | exeerrorcode: 0
[2025-10-11 08:05:27] 2025-10-11 12:04:53,932 | INFO     | exeerrordiag: 
[2025-10-11 08:05:27] 2025-10-11 12:04:53,933 | INFO     | exitcode: 0
[2025-10-11 08:05:27] 2025-10-11 12:04:53,933 | INFO     | exitmsg: OK
[2025-10-11 08:05:27] 2025-10-11 12:04:53,933 | INFO     | cpuconsumptiontime: 18141 s
[2025-10-11 08:05:27] 2025-10-11 12:04:53,933 | INFO     | nevents: 400
[2025-10-11 08:05:27] 2025-10-11 12:04:53,933 | INFO     | neventsw: 0
[2025-10-11 08:05:27] 2025-10-11 12:04:53,933 | INFO     | pid: 3839026
[2025-10-11 08:05:27] 2025-10-11 12:04:53,933 | INFO     | pgrp: 3839026
[2025-10-11 08:05:27] 2025-10-11 12:04:53,933 | INFO     | corecount: 12
[2025-10-11 08:05:27] 2025-10-11 12:04:53,933 | INFO     | event service: False
[2025-10-11 08:05:27] 2025-10-11 12:04:53,933 | INFO     | sizes: {0: 2348854, 4: 2349116, 11: 2349144, 1713: 2374039, 1714: 2383037, 1716: 2383093, 1721: 2383415}
[2025-10-11 08:05:27] 2025-10-11 12:04:53,933 | INFO     | --------------------------------------------------
[2025-10-11 08:05:27] 2025-10-11 12:04:53,933 | INFO     | 
[2025-10-11 08:05:27] 2025-10-11 12:04:53,933 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-10-11 08:05:27] 2025-10-11 12:04:53,945 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-11 08:05:27] 2025-10-11 12:04:53,945 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-11 08:05:27] 2025-10-11 12:04:53,945 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-11 08:05:27] 2025-10-11 12:04:53,945 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-11 08:05:27] 2025-10-11 12:04:53,945 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-11 08:05:27] 2025-10-11 12:04:53,945 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-11 08:05:27] 2025-10-11 12:04:53,945 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-11 08:05:27] 2025-10-11 12:04:53,945 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-11 08:05:27] 2025-10-11 12:04:53,945 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-11 08:05:27] 2025-10-11 12:04:53,945 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-11 08:05:27] 2025-10-11 12:04:53,945 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-11 08:05:27] 2025-10-11 12:04:53,945 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-11 08:05:27] 2025-10-11 12:04:53,945 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-11 08:05:27] 2025-10-11 12:04:53,945 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-11 08:05:27] 2025-10-11 12:04:53,945 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-11 08:05:27] 2025-10-11 12:04:53,945 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-11 08:05:27] 2025-10-11 12:04:53,945 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-11 08:05:27] 2025-10-11 12:04:53,946 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-11 08:05:27] 2025-10-11 12:04:53,946 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-11 08:05:27] 2025-10-11 12:04:53,946 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-11 08:05:27] 2025-10-11 12:04:53,946 | INFO     | job 6837707023 has completed (purged errors)
[2025-10-11 08:05:27] 2025-10-11 12:04:53,946 | INFO     | overall cleanup function is called
[2025-10-11 08:05:27] 2025-10-11 12:04:54,869 | INFO     | PID=3832468 has CPU usage=8.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-11 08:05:27] 2025-10-11 12:04:54,869 | INFO     | .. there are 11 such processes running
[2025-10-11 08:05:27] 2025-10-11 12:04:54,948 | INFO     | --- collectZombieJob: --- 10, [3839026]
[2025-10-11 08:05:27] 2025-10-11 12:04:54,949 | INFO     | zombie collector waiting for pid 3839026
[2025-10-11 08:05:27] 2025-10-11 12:04:54,949 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-11 08:05:27] 2025-10-11 12:04:54,949 | INFO     | collected zombie processes
[2025-10-11 08:05:27] 2025-10-11 12:04:54,949 | INFO     | will attempt to kill all subprocesses of pid=3839026
[2025-10-11 08:05:27] 2025-10-11 12:04:55,315 | INFO     | process IDs to be killed: [3839026] (in reverse order)
[2025-10-11 08:05:27] 2025-10-11 12:04:55,442 | WARNING  | found no corresponding commands to process id(s)
[2025-10-11 08:05:27] 2025-10-11 12:04:55,442 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-11 08:05:27] 2025-10-11 12:04:55,459 | INFO     | did not find any defunct processes belonging to 3839026
[2025-10-11 08:05:27] 2025-10-11 12:04:55,474 | INFO     | did not find any defunct processes belonging to 3839026
[2025-10-11 08:05:27] 2025-10-11 12:04:55,474 | INFO     | ready for new job
[2025-10-11 08:05:27] 2025-10-11 12:04:55,474 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-11 08:05:27] 2025-10-11 12:04:55,475 | INFO     | ***************************************
[2025-10-11 08:05:27] 2025-10-11 12:04:55,475 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-11 08:05:27] 2025-10-11 12:04:55,475 | INFO     | ***************************************
[2025-10-11 08:05:27] 2025-10-11 12:04:55,475 | INFO     | 
[2025-10-11 08:05:27] 2025-10-11 12:04:55,493 | INFO     | architecture information:
[2025-10-11 08:05:27] 2025-10-11 12:04:55,493 | INFO     | executing command: cat /etc/os-release
[2025-10-11 08:05:27] 2025-10-11 12:04:55,505 | INFO     | cat /etc/os-release:
[2025-10-11 08:05:27] NAME="CentOS Linux"
[2025-10-11 08:05:27] VERSION="7 (Core)"
[2025-10-11 08:05:27] ID="centos"
[2025-10-11 08:05:27] ID_LIKE="rhel fedora"
[2025-10-11 08:05:27] VERSION_ID="7"
[2025-10-11 08:05:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-11 08:05:27] ANSI_COLOR="0;31"
[2025-10-11 08:05:27] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-11 08:05:27] HOME_URL="https://www.centos.org/"
[2025-10-11 08:05:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-11 08:05:27] 
[2025-10-11 08:05:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-11 08:05:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-11 08:05:27] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-11 08:05:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-11 08:05:27] 
[2025-10-11 08:05:27] 2025-10-11 12:04:55,505 | INFO     | ***************************************
[2025-10-11 08:05:27] 2025-10-11 12:04:56,008 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-10-11 08:05:27] 2025-10-11 12:04:56,021 | INFO     | sufficient remaining disk space (90960822272 B)
[2025-10-11 08:05:27] 2025-10-11 12:04:56,021 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-11 08:05:27] 2025-10-11 12:04:56,021 | INFO     | current server update state: UPDATING_FINAL
[2025-10-11 08:05:27] 2025-10-11 12:04:56,021 | INFO     | update_server=False
[2025-10-11 08:05:27] 2025-10-11 12:04:56,021 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-11 08:05:27] 2025-10-11 12:04:56,021 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-11 08:05:27] 2025-10-11 12:04:56,562 | INFO     | all payload control threads have been joined
[2025-10-11 08:05:27] 2025-10-11 12:04:56,756 | INFO     | all data control threads have been joined
[2025-10-11 08:05:27] 2025-10-11 12:04:56,795 | INFO     | all job control threads have been joined
[2025-10-11 08:05:27] 2025-10-11 12:04:56,815 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-11 08:05:27] 2025-10-11 12:04:56,816 | INFO     | aborting loop
[2025-10-11 08:05:27] 2025-10-11 12:04:57,026 | INFO     | [job] retrieve thread has finished
[2025-10-11 08:05:27] 2025-10-11 12:04:57,096 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-11 08:05:27] 2025-10-11 12:04:57,473 | INFO     | [job] validate thread has finished
[2025-10-11 08:05:27] 2025-10-11 12:04:57,518 | INFO     | [payload] execute_payloads thread has finished
[2025-10-11 08:05:27] 2025-10-11 12:04:57,568 | INFO     | [payload] control thread has finished
[2025-10-11 08:05:27] 2025-10-11 12:04:57,575 | INFO     | [job] create_data_payload thread has finished
[2025-10-11 08:05:27] 2025-10-11 12:04:57,622 | INFO     | [payload] failed_post thread has finished
[2025-10-11 08:05:27] 2025-10-11 12:04:57,661 | INFO     | [payload] validate_pre thread has finished
[2025-10-11 08:05:27] 2025-10-11 12:04:57,663 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-11 08:05:27] 2025-10-11 12:04:57,761 | INFO     | [data] control thread has finished
[2025-10-11 08:05:27] 2025-10-11 12:04:57,801 | INFO     | [job] control thread has finished
[2025-10-11 08:05:27] 2025-10-11 12:04:57,821 | INFO     | [job] job monitor thread has finished
[2025-10-11 08:05:27] 2025-10-11 12:04:58,269 | INFO     | [payload] validate_post thread has finished
[2025-10-11 08:05:27] 2025-10-11 12:04:58,412 | INFO     | [data] copytool_in thread has finished
[2025-10-11 08:05:27] 2025-10-11 12:04:58,943 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-11 08:05:27] 2025-10-11 12:04:59,101 | INFO     | [data] copytool_out thread has finished
[2025-10-11 08:05:27] 2025-10-11 12:04:59,628 | INFO     | [monitor] cgroup control has ended
[2025-10-11 08:05:27] 2025-10-11 12:04:59,948 | INFO     | [job] queue monitor thread has finished
[2025-10-11 08:05:27] 2025-10-11 12:05:00,027 | INFO     | [data] queue_monitor thread has finished
[2025-10-11 08:05:27] 2025-10-11 12:05:00,518 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140358884259648)>', '<ExcThread(monitor, started 140358105159424)>']
[2025-10-11 08:05:27] 2025-10-11 12:05:05,543 | INFO     | all workflow threads have been joined
[2025-10-11 08:05:27] 2025-10-11 12:05:05,543 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-11 08:05:27] 2025-10-11 12:05:05,544 | INFO     | traces error code: 0
[2025-10-11 08:05:27] 2025-10-11 12:05:05,544 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-11 08:05:27] 2025-10-11 12:05:27,395 | INFO     | PID=3832468 has CPU usage=2.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-11 08:05:27] 2025-10-11 12:05:27,395 | INFO     | .. there are 11 such processes running
[2025-10-11 08:05:27] 2025-10-11 12:05:27,395 | INFO     | found 0 job(s) in 20 queues
[2025-10-11 08:05:27] 2025-10-11 12:05:27,395 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-11 08:05:27] 2025-10-11 12:05:27,396 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-11 08:05:27] 2025-10-11 12:05:27,396 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-11 08:05:27] 2025-10-11 12:05:27,396 | CRITICAL | thread 'MainThread' is not alive
[2025-10-11 08:05:27] 2025-10-11 12:05:27,396 | INFO     | [monitor] control thread has ended
[2025-10-11 08:05:27] 2025-10-11 12:05:27,474 [wrapper] ==== pilot stdout END ====
[2025-10-11 08:05:27] 2025-10-11 12:05:27,477 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-11 08:05:27] 2025-10-11 12:05:27,479 [wrapper] pilotpid: 3832468
[2025-10-11 08:05:27] 2025-10-11 12:05:27,481 [wrapper] Pilot exit status: 0
[2025-10-11 08:05:27] 2025-10-11 12:05:27,490 [wrapper] pandaids: 6837707023
[2025-10-11 08:05:27] 2025-10-11 12:05:27,580 [wrapper] cleanup supervisor_pilot 3962124 3832469
[2025-10-11 08:05:27] 2025-10-11 12:05:27,583 [wrapper] Test setup, not cleaning
[2025-10-11 08:05:27] 2025-10-11 12:05:27,585 [wrapper] apfmon messages muted
[2025-10-11 08:05:27] 2025-10-11 12:05:27,587 [wrapper] ==== wrapper stdout END ====
[2025-10-11 08:05:27] 2025-10-11 12:05:27,589 [wrapper] ==== wrapper stderr END ====
[2025-10-11 08:05:27]  *** Error codes and diagnostics ***
[2025-10-11 08:05:27]     "exeErrorCode": 0,
[2025-10-11 08:05:27]     "exeErrorDiag": "",
[2025-10-11 08:05:27]     "pilotErrorCode": 0,
[2025-10-11 08:05:27]     "pilotErrorDiag": "",
[2025-10-11 08:05:27]  *** Listing of results directory ***
[2025-10-11 08:05:27] total 414560
[2025-10-11 08:05:27] -rw-r--r--. 1 boincer umatlas    557409 Oct 10 14:18 pilot3.tar.gz
[2025-10-11 08:05:27] -rw-r--r--. 1 boincer umatlas      5112 Oct 10 14:30 queuedata.json
[2025-10-11 08:05:27] -rwx------. 1 boincer umatlas     36292 Oct 10 14:31 runpilot2-wrapper.sh
[2025-10-11 08:05:27] -rw-r--r--. 1 boincer umatlas       100 Oct 11 07:35 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-11 08:05:27] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 11 07:35 run_atlas
[2025-10-11 08:05:27] -rw-r--r--. 1 boincer umatlas       105 Oct 11 07:35 job.xml
[2025-10-11 08:05:27] -rw-r--r--. 2 boincer umatlas 221144912 Oct 11 07:35 EVNT.46676267._001753.pool.root.1
[2025-10-11 08:05:27] -rw-r--r--. 2 boincer umatlas     15120 Oct 11 07:35 start_atlas.sh
[2025-10-11 08:05:27] drwxrwx--x. 2 boincer umatlas      4096 Oct 11 07:35 shared
[2025-10-11 08:05:27] -rw-r--r--. 2 boincer umatlas    569682 Oct 11 07:35 input.tar.gz
[2025-10-11 08:05:27] -rw-r--r--. 1 boincer umatlas         0 Oct 11 07:35 boinc_lockfile
[2025-10-11 08:05:27] -rw-r--r--. 1 boincer umatlas      2548 Oct 11 07:35 pandaJob.out
[2025-10-11 08:05:27] -rw-------. 1 boincer umatlas    975509 Oct 11 07:35 agis_schedconf.cvmfs.json
[2025-10-11 08:05:27] -rw-------. 1 boincer umatlas   1560580 Oct 11 07:35 agis_ddmendpoints.agis.ALL.json
[2025-10-11 08:05:27] drwx------. 5 boincer umatlas      4096 Oct 11 07:35 pilot3
[2025-10-11 08:05:27] -rw-r--r--. 1 boincer umatlas      7161 Oct 11 08:00 init_data.xml
[2025-10-11 08:05:27] -rw-r--r--. 1 boincer umatlas       529 Oct 11 08:04 boinc_task_state.xml
[2025-10-11 08:05:27] -rw-------. 1 boincer umatlas 198229690 Oct 11 08:04 HITS.46676269._043288.pool.root.1
[2025-10-11 08:05:27] -rw-------. 1 boincer umatlas        95 Oct 11 08:04 pilot_heartbeat.json
[2025-10-11 08:05:27] -rw-------. 1 boincer umatlas      1029 Oct 11 08:04 memory_monitor_summary.json
[2025-10-11 08:05:27] -rw-------. 1 boincer umatlas    330134 Oct 11 08:04 log.46676269._043288.job.log.tgz.1
[2025-10-11 08:05:27] -rw-------. 1 boincer umatlas      7771 Oct 11 08:04 heartbeat.json
[2025-10-11 08:05:27] -rw-r--r--. 1 boincer umatlas      8192 Oct 11 08:05 boinc_mmap_file
[2025-10-11 08:05:27] -rw-r--r--. 1 boincer umatlas        27 Oct 11 08:05 wrapper_checkpoint.txt
[2025-10-11 08:05:27] -rw-------. 1 boincer umatlas       893 Oct 11 08:05 pilotlog.txt
[2025-10-11 08:05:27] -rw-------. 1 boincer umatlas    287222 Oct 11 08:05 log.46676269._043288.job.log.1
[2025-10-11 08:05:27] -rw-------. 1 boincer umatlas       357 Oct 11 08:05 output.list
[2025-10-11 08:05:27] -rw-r--r--. 1 boincer umatlas       620 Oct 11 08:05 runtime_log
[2025-10-11 08:05:27] -rw-------. 1 boincer umatlas    634880 Oct 11 08:05 result.tar.gz
[2025-10-11 08:05:27] -rw-r--r--. 1 boincer umatlas      8695 Oct 11 08:05 runtime_log.err
[2025-10-11 08:05:27] -rw-------. 1 boincer umatlas       647 Oct 11 08:05 9X4KDms4WR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmX7dNDm6rWBXn.diag
[2025-10-11 08:05:27] -rw-r--r--. 1 boincer umatlas     22150 Oct 11 08:05 stderr.txt
[2025-10-11 08:05:27] HITS file was successfully produced:
[2025-10-11 08:05:27] -rw-------. 1 boincer umatlas 198229690 Oct 11 08:04 shared/HITS.pool.root.1
[2025-10-11 08:05:27]  *** Contents of shared directory: ***
[2025-10-11 08:05:27] total 410752
[2025-10-11 08:05:27] -rw-r--r--. 2 boincer umatlas 221144912 Oct 11 07:35 ATLAS.root_0
[2025-10-11 08:05:27] -rw-r--r--. 2 boincer umatlas     15120 Oct 11 07:35 start_atlas.sh
[2025-10-11 08:05:27] -rw-r--r--. 2 boincer umatlas    569682 Oct 11 07:35 input.tar.gz
[2025-10-11 08:05:27] -rw-------. 1 boincer umatlas 198229690 Oct 11 08:04 HITS.pool.root.1
[2025-10-11 08:05:27] -rw-------. 1 boincer umatlas    634880 Oct 11 08:05 result.tar.gz
08:05:29 (3828750): run_atlas exited; CPU time 18184.498326
08:05:29 (3828750): called boinc_finish(0)

</stderr_txt>
]]>

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