Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
07:23:55 (1228362): wrapper (7.7.26015): starting
07:23:55 (1228362): wrapper: running run_atlas (--nthreads 10)
[2025-10-11 07:23:55] Arguments: --nthreads 10
[2025-10-11 07:23:55] Threads: 10
[2025-10-11 07:23:55] Checking for CVMFS
[2025-10-11 07:23:55] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 07:23:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 07:23:55] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 07:23:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 07:23:55] 2.13.2.0 3269412 34222 366256 151583 1 483 35118828 40960001 57722 16776704 0 431919239 99.839 181678468 36837 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-11 07:23:55] CVMFS is ok
[2025-10-11 07:23:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 07:23:55] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 07:23:55] Further information can be found at the LHC@home message board.
[2025-10-11 07:23:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 07:23:55] Checking for apptainer binary...
[2025-10-11 07:23:55] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 07:23:55] Running /usr/bin/apptainer --version
[2025-10-11 07:23:55] apptainer version 1.4.3-1.el9
[2025-10-11 07:23:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 07:23:55] c8-16-2.aglt2.org
[2025-10-11 07:23:55] apptainer works
[2025-10-11 07:23:55] Set ATHENA_PROC_NUMBER=10
[2025-10-11 07:23:55] Set ATHENA_CORE_NUMBER=10
[2025-10-11 07:23:55] Starting ATLAS job with PandaID=6838119533
[2025-10-11 07:23:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-11 08:16:20]  *** The last 200 lines of the pilot log: ***
[2025-10-11 08:16:20] 2025-10-11 12:15:27,668 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-11 08:16:20] 2025-10-11 12:15:27,669 | INFO     | summary of transferred files:
[2025-10-11 08:16:20] 2025-10-11 12:15:27,669 | INFO     |  -- lfn=log.46676269._052883.job.log.tgz.1, status_code=0, status=transferred
[2025-10-11 08:16:20] 2025-10-11 12:15:27,669 | INFO     | stage-out finished correctly
[2025-10-11 08:16:20] 2025-10-11 12:15:27,724 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-11 08:16:20] 2025-10-11 12:15:28,721 | INFO     | job 6838119533 has state=finished
[2025-10-11 08:16:20] 2025-10-11 12:15:28,721 | INFO     | preparing for final server update for job 6838119533 in state='finished'
[2025-10-11 08:16:20] 2025-10-11 12:15:28,721 | INFO     | this job has now completed (state=finished)
[2025-10-11 08:16:20] 2025-10-11 12:15:28,722 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-11 08:16:20] 2025-10-11 12:15:28,722 | INFO     | log transfer has been attempted: DONE
[2025-10-11 08:16:20] 2025-10-11 12:15:28,722 | INFO     | job 6838119533 has finished - writing final server update
[2025-10-11 08:16:20] 2025-10-11 12:15:28,722 | INFO     | total number of processed events: 400 (read)
[2025-10-11 08:16:20] 2025-10-11 12:15:28,722 | INFO     | executing command: lscpu
[2025-10-11 08:16:20] 2025-10-11 12:15:28,775 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-11 08:16:20] 2025-10-11 12:15:29,179 | INFO     | PID=1235376 has CPU usage=12.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-10-11 08:16:20] 2025-10-11 12:15:29,180 | INFO     | .. there are 69 such processes running
[2025-10-11 08:16:20] 2025-10-11 12:15:30,181 | INFO     | time since job start (3082s) is within the limit (172800.0s)
[2025-10-11 08:16:20] 2025-10-11 12:15:31,090 | WARNING  | process 1257044 can no longer be monitored (due to stat problems) - aborting
[2025-10-11 08:16:20] 2025-10-11 12:15:31,090 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6838119533/memory_monitor_summary.json (trf name=prmon)
[2025-10-11 08:16:20] 2025-10-11 12:15:31,962 | INFO     | number of running child processes to parent process 1257044: 1
[2025-10-11 08:16:20] 2025-10-11 12:15:31,962 | INFO     | maximum number of monitored processes: 7
[2025-10-11 08:16:20] 2025-10-11 12:15:32,195 | INFO     | time since job start (3084s) is within the limit (172800.0s)
[2025-10-11 08:16:20] 2025-10-11 12:15:34,201 | INFO     | time since job start (3086s) is within the limit (172800.0s)
[2025-10-11 08:16:20] 2025-10-11 12:15:34,466 | INFO     | monitor loop #201: job 0:6838119533 is in state 'finished'
[2025-10-11 08:16:20] 2025-10-11 12:15:34,467 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 08:16:20] 2025-10-11 12:15:36,208 | INFO     | time since job start (3088s) is within the limit (172800.0s)
[2025-10-11 08:16:20] 2025-10-11 12:15:36,974 | INFO     | monitor loop #202: job 0:6838119533 is in state 'finished'
[2025-10-11 08:16:20] 2025-10-11 12:15:36,974 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 08:16:20] 2025-10-11 12:15:38,215 | INFO     | time since job start (3090s) is within the limit (172800.0s)
[2025-10-11 08:16:20] 2025-10-11 12:15:39,481 | INFO     | monitor loop #203: job 0:6838119533 is in state 'finished'
[2025-10-11 08:16:20] 2025-10-11 12:15:39,481 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 08:16:20] 2025-10-11 12:15:40,223 | INFO     | time since job start (3092s) is within the limit (172800.0s)
[2025-10-11 08:16:20] 2025-10-11 12:15:41,986 | INFO     | monitor loop #204: job 0:6838119533 is in state 'finished'
[2025-10-11 08:16:20] 2025-10-11 12:15:41,986 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 08:16:20] 2025-10-11 12:15:42,197 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-11 08:16:20] 2025-10-11 12:15:42,202 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3791.395265624998
[2025-10-11 08:16:20] 2025-10-11 12:15:42,215 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6838119533/memory_monitor_summary.json (trf name=prmon)
[2025-10-11 08:16:20] 2025-10-11 12:15:42,216 | INFO     | extracted standard info from prmon json
[2025-10-11 08:16:20] 2025-10-11 12:15:42,216 | INFO     | extracted standard memory fields from prmon json
[2025-10-11 08:16:20] 2025-10-11 12:15:42,216 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-11 08:16:20] 2025-10-11 12:15:42,216 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-11 08:16:20] 2025-10-11 12:15:42,216 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-11 08:16:20] 2025-10-11 12:15:42,217 | INFO     | fitting pss+swap vs Time
[2025-10-11 08:16:20] 2025-10-11 12:15:42,217 | INFO     | sum of square deviations: 24643024.976744205
[2025-10-11 08:16:20] 2025-10-11 12:15:42,217 | INFO     | sum of deviations: -222416824.95348835
[2025-10-11 08:16:20] 2025-10-11 12:15:42,218 | INFO     | mean x: 1760183464.0232558
[2025-10-11 08:16:20] 2025-10-11 12:15:42,218 | INFO     | mean y: 2293222.9534883723
[2025-10-11 08:16:20] 2025-10-11 12:15:42,218 | INFO     | -- intersect: 15888915006.323885
[2025-10-11 08:16:20] 2025-10-11 12:15:42,218 | INFO     | intersect: 15888915006.323885
[2025-10-11 08:16:20] 2025-10-11 12:15:42,218 | INFO     | chi2: 0.010013456873451253
[2025-10-11 08:16:20] 2025-10-11 12:15:42,218 | INFO     | -- intersect: 15888915006.323885
[2025-10-11 08:16:20] 2025-10-11 12:15:42,218 | INFO     | current memory leak: -9.03 B/s (using 43 data points, chi2=0.01)
[2025-10-11 08:16:20] 2025-10-11 12:15:42,218 | INFO     | could have reported an average CPU frequency of 3787 MHz (5 samples)
[2025-10-11 08:16:20] 2025-10-11 12:15:42,218 | INFO     | ..............................
[2025-10-11 08:16:20] 2025-10-11 12:15:42,218 | INFO     | . Timing measurements:
[2025-10-11 08:16:20] 2025-10-11 12:15:42,218 | INFO     | . get job = 0 s
[2025-10-11 08:16:20] 2025-10-11 12:15:42,218 | INFO     | . initial setup = 2 s
[2025-10-11 08:16:20] 2025-10-11 12:15:42,218 | INFO     | . payload setup = 6 s
[2025-10-11 08:16:20] 2025-10-11 12:15:42,218 | INFO     | . stage-in = 0 s
[2025-10-11 08:16:20] 2025-10-11 12:15:42,218 | INFO     | . payload execution = 3052 s
[2025-10-11 08:16:20] 2025-10-11 12:15:42,218 | INFO     | . stage-out = 0 s
[2025-10-11 08:16:20] 2025-10-11 12:15:42,218 | INFO     | . log creation = 0 s
[2025-10-11 08:16:20] 2025-10-11 12:15:42,218 | INFO     | ..............................
[2025-10-11 08:16:20] 2025-10-11 12:15:42,235 | INFO     | time since job start (3094s) is within the limit (172800.0s)
[2025-10-11 08:16:20] 2025-10-11 12:15:42,658 | INFO     | 
[2025-10-11 08:16:20] 2025-10-11 12:15:42,658 | INFO     | job summary report
[2025-10-11 08:16:20] 2025-10-11 12:15:42,658 | INFO     | --------------------------------------------------
[2025-10-11 08:16:20] 2025-10-11 12:15:42,658 | INFO     | PanDA job id: 6838119533
[2025-10-11 08:16:20] 2025-10-11 12:15:42,658 | INFO     | task id: 46676269
[2025-10-11 08:16:20] 2025-10-11 12:15:42,658 | INFO     | errors: (none)
[2025-10-11 08:16:20] 2025-10-11 12:15:42,658 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-11 08:16:20] 2025-10-11 12:15:42,658 | INFO     | pilot state: finished 
[2025-10-11 08:16:20] 2025-10-11 12:15:42,658 | INFO     | transexitcode: 0
[2025-10-11 08:16:20] 2025-10-11 12:15:42,658 | INFO     | exeerrorcode: 0
[2025-10-11 08:16:20] 2025-10-11 12:15:42,658 | INFO     | exeerrordiag: 
[2025-10-11 08:16:20] 2025-10-11 12:15:42,658 | INFO     | exitcode: 0
[2025-10-11 08:16:20] 2025-10-11 12:15:42,658 | INFO     | exitmsg: OK
[2025-10-11 08:16:20] 2025-10-11 12:15:42,658 | INFO     | cpuconsumptiontime: 21994 s
[2025-10-11 08:16:20] 2025-10-11 12:15:42,658 | INFO     | nevents: 400
[2025-10-11 08:16:20] 2025-10-11 12:15:42,658 | INFO     | neventsw: 0
[2025-10-11 08:16:20] 2025-10-11 12:15:42,659 | INFO     | pid: 1257044
[2025-10-11 08:16:20] 2025-10-11 12:15:42,659 | INFO     | pgrp: 1257044
[2025-10-11 08:16:20] 2025-10-11 12:15:42,659 | INFO     | corecount: 10
[2025-10-11 08:16:20] 2025-10-11 12:15:42,659 | INFO     | event service: False
[2025-10-11 08:16:20] 2025-10-11 12:15:42,659 | INFO     | sizes: {0: 2348857, 5: 2349119, 11: 2349175, 3062: 2374703, 3063: 2383757, 3077: 2383927}
[2025-10-11 08:16:20] 2025-10-11 12:15:42,659 | INFO     | --------------------------------------------------
[2025-10-11 08:16:20] 2025-10-11 12:15:42,659 | INFO     | 
[2025-10-11 08:16:20] 2025-10-11 12:15:42,659 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2025-10-11 08:16:20] 2025-10-11 12:15:42,704 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-11 08:16:20] 2025-10-11 12:15:42,704 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-11 08:16:20] 2025-10-11 12:15:42,704 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-11 08:16:20] 2025-10-11 12:15:42,704 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-11 08:16:20] 2025-10-11 12:15:42,704 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-11 08:16:20] 2025-10-11 12:15:42,704 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-11 08:16:20] 2025-10-11 12:15:42,704 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-11 08:16:20] 2025-10-11 12:15:42,705 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-11 08:16:20] 2025-10-11 12:15:42,705 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-11 08:16:20] 2025-10-11 12:15:42,705 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-11 08:16:20] 2025-10-11 12:15:42,705 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-11 08:16:20] 2025-10-11 12:15:42,705 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-11 08:16:20] 2025-10-11 12:15:42,705 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-11 08:16:20] 2025-10-11 12:15:42,705 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-11 08:16:20] 2025-10-11 12:15:42,705 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-11 08:16:20] 2025-10-11 12:15:42,705 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-11 08:16:20] 2025-10-11 12:15:42,705 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-11 08:16:20] 2025-10-11 12:15:42,705 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-11 08:16:20] 2025-10-11 12:15:42,705 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-11 08:16:20] 2025-10-11 12:15:42,705 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-11 08:16:20] 2025-10-11 12:15:42,705 | INFO     | job 6838119533 has completed (purged errors)
[2025-10-11 08:16:20] 2025-10-11 12:15:42,706 | INFO     | overall cleanup function is called
[2025-10-11 08:16:20] 2025-10-11 12:15:43,716 | INFO     | --- collectZombieJob: --- 10, [1257044]
[2025-10-11 08:16:20] 2025-10-11 12:15:43,717 | INFO     | zombie collector waiting for pid 1257044
[2025-10-11 08:16:20] 2025-10-11 12:15:43,717 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-11 08:16:20] 2025-10-11 12:15:43,717 | INFO     | collected zombie processes
[2025-10-11 08:16:20] 2025-10-11 12:15:43,717 | INFO     | will attempt to kill all subprocesses of pid=1257044
[2025-10-11 08:16:20] 2025-10-11 12:15:44,417 | INFO     | process IDs to be killed: [1257044] (in reverse order)
[2025-10-11 08:16:20] 2025-10-11 12:15:44,680 | WARNING  | found no corresponding commands to process id(s)
[2025-10-11 08:16:20] 2025-10-11 12:15:44,680 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-11 08:16:20] 2025-10-11 12:15:44,720 | INFO     | did not find any defunct processes belonging to 1257044
[2025-10-11 08:16:20] 2025-10-11 12:15:44,756 | INFO     | did not find any defunct processes belonging to 1257044
[2025-10-11 08:16:20] 2025-10-11 12:15:44,756 | INFO     | ready for new job
[2025-10-11 08:16:20] 2025-10-11 12:15:44,756 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-11 08:16:20] 2025-10-11 12:15:44,758 | INFO     | ***************************************
[2025-10-11 08:16:20] 2025-10-11 12:15:44,758 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-11 08:16:20] 2025-10-11 12:15:44,758 | INFO     | ***************************************
[2025-10-11 08:16:20] 2025-10-11 12:15:44,758 | INFO     | 
[2025-10-11 08:16:20] 2025-10-11 12:15:44,776 | INFO     | architecture information:
[2025-10-11 08:16:20] 2025-10-11 12:15:44,776 | INFO     | executing command: cat /etc/os-release
[2025-10-11 08:16:20] 2025-10-11 12:15:44,799 | INFO     | cat /etc/os-release:
[2025-10-11 08:16:20] NAME="CentOS Linux"
[2025-10-11 08:16:20] VERSION="7 (Core)"
[2025-10-11 08:16:20] ID="centos"
[2025-10-11 08:16:20] ID_LIKE="rhel fedora"
[2025-10-11 08:16:20] VERSION_ID="7"
[2025-10-11 08:16:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-11 08:16:20] ANSI_COLOR="0;31"
[2025-10-11 08:16:20] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-11 08:16:20] HOME_URL="https://www.centos.org/"
[2025-10-11 08:16:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-11 08:16:20] 
[2025-10-11 08:16:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-11 08:16:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-11 08:16:20] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-11 08:16:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-11 08:16:20] 
[2025-10-11 08:16:20] 2025-10-11 12:15:44,800 | INFO     | ***************************************
[2025-10-11 08:16:20] 2025-10-11 12:15:45,303 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-10-11 08:16:20] 2025-10-11 12:15:45,346 | INFO     | sufficient remaining disk space (166827393024 B)
[2025-10-11 08:16:20] 2025-10-11 12:15:45,346 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-11 08:16:20] 2025-10-11 12:15:45,346 | INFO     | current server update state: UPDATING_FINAL
[2025-10-11 08:16:20] 2025-10-11 12:15:45,346 | INFO     | update_server=False
[2025-10-11 08:16:20] 2025-10-11 12:15:45,347 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-11 08:16:20] 2025-10-11 12:15:45,378 | INFO     | all payload control threads have been joined
[2025-10-11 08:16:20] 2025-10-11 12:15:45,465 | INFO     | all data control threads have been joined
[2025-10-11 08:16:20] 2025-10-11 12:15:45,497 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-11 08:16:20] 2025-10-11 12:15:45,497 | INFO     | aborting loop
[2025-10-11 08:16:20] 2025-10-11 12:15:45,497 | INFO     | all job control threads have been joined
[2025-10-11 08:16:20] 2025-10-11 12:15:45,783 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-11 08:16:20] 2025-10-11 12:15:46,353 | INFO     | [job] retrieve thread has finished
[2025-10-11 08:16:20] 2025-10-11 12:15:46,379 | INFO     | [payload] failed_post thread has finished
[2025-10-11 08:16:20] 2025-10-11 12:15:46,385 | INFO     | [payload] control thread has finished
[2025-10-11 08:16:20] 2025-10-11 12:15:46,470 | INFO     | [data] control thread has finished
[2025-10-11 08:16:20] 2025-10-11 12:15:46,502 | INFO     | [job] job monitor thread has finished
[2025-10-11 08:16:20] 2025-10-11 12:15:46,502 | INFO     | [job] control thread has finished
[2025-10-11 08:16:20] 2025-10-11 12:15:47,022 | INFO     | [payload] validate_pre thread has finished
[2025-10-11 08:16:20] 2025-10-11 12:15:47,294 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-11 08:16:20] 2025-10-11 12:15:47,300 | INFO     | [payload] validate_post thread has finished
[2025-10-11 08:16:20] 2025-10-11 12:15:47,320 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-11 08:16:20] 2025-10-11 12:15:47,366 | INFO     | [data] copytool_in thread has finished
[2025-10-11 08:16:20] 2025-10-11 12:15:47,493 | INFO     | [job] validate thread has finished
[2025-10-11 08:16:20] 2025-10-11 12:15:47,576 | INFO     | [payload] execute_payloads thread has finished
[2025-10-11 08:16:20] 2025-10-11 12:15:47,666 | INFO     | [job] create_data_payload thread has finished
[2025-10-11 08:16:20] 2025-10-11 12:15:47,788 | INFO     | [data] copytool_out thread has finished
[2025-10-11 08:16:20] 2025-10-11 12:15:48,299 | INFO     | [job] queue monitor thread has finished
[2025-10-11 08:16:20] 2025-10-11 12:15:51,332 | INFO     | [data] queue_monitor thread has finished
[2025-10-11 08:16:20] 2025-10-11 12:15:56,111 | INFO     | job.realtimelogging is not enabled
[2025-10-11 08:16:20] 2025-10-11 12:15:57,116 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-11 08:16:20] 2025-10-11 12:16:13,493 | INFO     | [monitor] cgroup control has ended
[2025-10-11 08:16:20] 2025-10-11 12:16:14,652 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140581756405568)>', '<ExcThread(monitor, started 140580990482176)>']
[2025-10-11 08:16:20] 2025-10-11 12:16:16,538 | INFO     | PID=1235376 has CPU usage=5.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-11 08:16:20] 2025-10-11 12:16:16,538 | INFO     | .. there are 69 such processes running
[2025-10-11 08:16:20] 2025-10-11 12:16:16,539 | INFO     | found 0 job(s) in 20 queues
[2025-10-11 08:16:20] 2025-10-11 12:16:16,539 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-11 08:16:20] 2025-10-11 12:16:16,539 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-11 08:16:20] 2025-10-11 12:16:16,539 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-11 08:16:20] 2025-10-11 12:16:16,539 | INFO     | [monitor] control thread has ended
[2025-10-11 08:16:20] 2025-10-11 12:16:19,678 | INFO     | all workflow threads have been joined
[2025-10-11 08:16:20] 2025-10-11 12:16:19,678 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-11 08:16:20] 2025-10-11 12:16:19,678 | INFO     | traces error code: 0
[2025-10-11 08:16:20] 2025-10-11 12:16:19,678 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-11 08:16:20] 2025-10-11 12:16:19,825 [wrapper] ==== pilot stdout END ====
[2025-10-11 08:16:20] 2025-10-11 12:16:19,836 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-11 08:16:20] 2025-10-11 12:16:19,852 [wrapper] pilotpid: 1235376
[2025-10-11 08:16:20] 2025-10-11 12:16:19,863 [wrapper] Pilot exit status: 0
[2025-10-11 08:16:20] 2025-10-11 12:16:19,899 [wrapper] pandaids: 6838119533
[2025-10-11 08:16:20] 2025-10-11 12:16:20,073 [wrapper] cleanup supervisor_pilot 1740808 1235377
[2025-10-11 08:16:20] 2025-10-11 12:16:20,076 [wrapper] Test setup, not cleaning
[2025-10-11 08:16:20] 2025-10-11 12:16:20,111 [wrapper] apfmon messages muted
[2025-10-11 08:16:20] 2025-10-11 12:16:20,114 [wrapper] ==== wrapper stdout END ====
[2025-10-11 08:16:20] 2025-10-11 12:16:20,139 [wrapper] ==== wrapper stderr END ====
[2025-10-11 08:16:20]  *** Error codes and diagnostics ***
[2025-10-11 08:16:20]     "exeErrorCode": 0,
[2025-10-11 08:16:20]     "exeErrorDiag": "",
[2025-10-11 08:16:20]     "pilotErrorCode": 0,
[2025-10-11 08:16:20]     "pilotErrorDiag": "",
[2025-10-11 08:16:20]  *** Listing of results directory ***
[2025-10-11 08:16:20] total 410692
[2025-10-11 08:16:20] -rw-r--r--. 1 boincer umatlas    557409 Oct 11 02:35 pilot3.tar.gz
[2025-10-11 08:16:20] -rw-r--r--. 1 boincer umatlas      5112 Oct 11 02:40 queuedata.json
[2025-10-11 08:16:20] -rwx------. 1 boincer umatlas     36292 Oct 11 02:41 runpilot2-wrapper.sh
[2025-10-11 08:16:20] -rw-r--r--. 1 boincer umatlas       100 Oct 11 07:23 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-11 08:16:20] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 11 07:23 run_atlas
[2025-10-11 08:16:20] -rw-r--r--. 1 boincer umatlas       105 Oct 11 07:23 job.xml
[2025-10-11 08:16:20] -rw-r--r--. 2 boincer umatlas 223096344 Oct 11 07:23 EVNT.46676267._002125.pool.root.1
[2025-10-11 08:16:20] -rw-r--r--. 2 boincer umatlas     15120 Oct 11 07:23 start_atlas.sh
[2025-10-11 08:16:20] drwxrwx--x. 2 boincer umatlas      4096 Oct 11 07:23 shared
[2025-10-11 08:16:20] -rw-r--r--. 2 boincer umatlas    569680 Oct 11 07:23 input.tar.gz
[2025-10-11 08:16:20] -rw-r--r--. 1 boincer umatlas         0 Oct 11 07:23 boinc_lockfile
[2025-10-11 08:16:20] -rw-r--r--. 1 boincer umatlas      2550 Oct 11 07:23 pandaJob.out
[2025-10-11 08:16:20] -rw-------. 1 boincer umatlas    975509 Oct 11 07:24 agis_schedconf.cvmfs.json
[2025-10-11 08:16:20] -rw-------. 1 boincer umatlas   1560580 Oct 11 07:24 agis_ddmendpoints.agis.ALL.json
[2025-10-11 08:16:20] drwx------. 5 boincer umatlas      4096 Oct 11 07:24 pilot3
[2025-10-11 08:16:20] -rw-r--r--. 1 boincer umatlas      7161 Oct 11 08:09 init_data.xml
[2025-10-11 08:16:20] -rw-------. 1 boincer umatlas 191988203 Oct 11 08:15 HITS.46676269._052883.pool.root.1
[2025-10-11 08:16:20] -rw-r--r--. 1 boincer umatlas       529 Oct 11 08:15 boinc_task_state.xml
[2025-10-11 08:16:20] -rw-------. 1 boincer umatlas      1033 Oct 11 08:15 memory_monitor_summary.json
[2025-10-11 08:16:20] -rw-------. 1 boincer umatlas    338034 Oct 11 08:15 log.46676269._052883.job.log.tgz.1
[2025-10-11 08:16:20] -rw-------. 1 boincer umatlas      7776 Oct 11 08:15 heartbeat.json
[2025-10-11 08:16:20] -rw-------. 1 boincer umatlas        95 Oct 11 08:16 pilot_heartbeat.json
[2025-10-11 08:16:20] -rw-r--r--. 1 boincer umatlas      8192 Oct 11 08:16 boinc_mmap_file
[2025-10-11 08:16:20] -rw-------. 1 boincer umatlas      4897 Oct 11 08:16 pilotlog.txt
[2025-10-11 08:16:20] -rw-r--r--. 1 boincer umatlas        27 Oct 11 08:16 wrapper_checkpoint.txt
[2025-10-11 08:16:20] -rw-------. 1 boincer umatlas    446055 Oct 11 08:16 log.46676269._052883.job.log.1
[2025-10-11 08:16:20] -rw-------. 1 boincer umatlas       357 Oct 11 08:16 output.list
[2025-10-11 08:16:20] -rw-r--r--. 1 boincer umatlas       620 Oct 11 08:16 runtime_log
[2025-10-11 08:16:20] -rw-------. 1 boincer umatlas    798720 Oct 11 08:16 result.tar.gz
[2025-10-11 08:16:20] -rw-r--r--. 1 boincer umatlas      8700 Oct 11 08:16 runtime_log.err
[2025-10-11 08:16:20] -rw-------. 1 boincer umatlas       649 Oct 11 08:16 MIHLDm7SiR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmddfNDmMsVhAn.diag
[2025-10-11 08:16:20] -rw-r--r--. 1 boincer umatlas     22253 Oct 11 08:16 stderr.txt
[2025-10-11 08:16:20] HITS file was successfully produced:
[2025-10-11 08:16:20] -rw-------. 1 boincer umatlas 191988203 Oct 11 08:15 shared/HITS.pool.root.1
[2025-10-11 08:16:20]  *** Contents of shared directory: ***
[2025-10-11 08:16:20] total 406720
[2025-10-11 08:16:20] -rw-r--r--. 2 boincer umatlas 223096344 Oct 11 07:23 ATLAS.root_0
[2025-10-11 08:16:20] -rw-r--r--. 2 boincer umatlas     15120 Oct 11 07:23 start_atlas.sh
[2025-10-11 08:16:20] -rw-r--r--. 2 boincer umatlas    569680 Oct 11 07:23 input.tar.gz
[2025-10-11 08:16:20] -rw-------. 1 boincer umatlas 191988203 Oct 11 08:15 HITS.pool.root.1
[2025-10-11 08:16:20] -rw-------. 1 boincer umatlas    798720 Oct 11 08:16 result.tar.gz
08:16:21 (1228362): run_atlas exited; CPU time 22089.690128
08:16:21 (1228362): called boinc_finish(0)

</stderr_txt>
]]>

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