Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
20:59:13 (179399): wrapper (7.7.26015): starting
20:59:13 (179399): wrapper: running run_atlas (--nthreads 12)
[2025-10-11 20:59:13] Arguments: --nthreads 12
[2025-10-11 20:59:13] Threads: 12
[2025-10-11 20:59:13] Checking for CVMFS
[2025-10-11 20:59:14] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 20:59:15] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 20:59:15] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 20:59:16] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 20:59:16] 2.13.2.0 8216 23846 249168 151593 0 521 36382853 46080000 55344 130560 0 162291876 99.890 47419523 22681 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://[2001:718:401:6025:1:0:2:0]:3128 1
[2025-10-11 20:59:16] CVMFS is ok
[2025-10-11 20:59:16] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 20:59:16] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 20:59:16] Further information can be found at the LHC@home message board.
[2025-10-11 20:59:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 20:59:16] Checking for apptainer binary...
[2025-10-11 20:59:16] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 20:59:16] Running /usr/bin/apptainer --version
[2025-10-11 20:59:16] apptainer version 1.4.2-1.el9
[2025-10-11 20:59:16] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 21:00:38] mff2103.farm.particle.cz
[2025-10-11 21:00:38] apptainer works
[2025-10-11 21:00:38] Set ATHENA_PROC_NUMBER=12
[2025-10-11 21:00:38] Set ATHENA_CORE_NUMBER=12
[2025-10-11 21:00:38] Starting ATLAS job with PandaID=6837875347
[2025-10-11 21:00:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/scratch/.boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-11 22:43:37]  *** The last 200 lines of the pilot log: ***
[2025-10-11 22:43:37] 2025-10-11 20:40:19,028 | INFO     | preparing for final server update for job 6837875347 in state='finished'
[2025-10-11 22:43:37] 2025-10-11 20:40:19,028 | INFO     | this job has now completed (state=finished)
[2025-10-11 22:43:37] 2025-10-11 20:40:19,028 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-11 22:43:37] 2025-10-11 20:40:19,029 | INFO     | log transfer has been attempted: DONE
[2025-10-11 22:43:37] 2025-10-11 20:40:19,029 | INFO     | job 6837875347 has finished - writing final server update
[2025-10-11 22:43:37] 2025-10-11 20:40:19,029 | INFO     | total number of processed events: 400 (read)
[2025-10-11 22:43:37] 2025-10-11 20:40:19,033 | INFO     | executing command: lscpu
[2025-10-11 22:43:37] 2025-10-11 20:40:19,121 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-11 22:43:37] 2025-10-11 20:40:19,301 | INFO     | time since job start (5893s) is within the limit (172800.0s)
[2025-10-11 22:43:37] 2025-10-11 20:40:21,784 | INFO     | PID=191890 has CPU usage=14.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-11 22:43:37] 2025-10-11 20:40:21,784 | INFO     | .. there are 80 such processes running
[2025-10-11 22:43:37] 2025-10-11 20:40:21,834 | WARNING  | process 208967 can no longer be monitored (due to stat problems) - aborting
[2025-10-11 22:43:37] 2025-10-11 20:40:21,834 | INFO     | using path: /scratch/.boinc/slots/0/PanDA_Pilot-6837875347/memory_monitor_summary.json (trf name=prmon)
[2025-10-11 22:43:37] 2025-10-11 20:40:22,461 | INFO     | number of running child processes to parent process 208967: 1
[2025-10-11 22:43:37] 2025-10-11 20:40:22,461 | INFO     | maximum number of monitored processes: 7
[2025-10-11 22:43:37] 2025-10-11 20:40:22,785 | INFO     | time since job start (5896s) is within the limit (172800.0s)
[2025-10-11 22:43:37] 2025-10-11 20:40:24,791 | INFO     | time since job start (5898s) is within the limit (172800.0s)
[2025-10-11 22:43:37] 2025-10-11 20:40:24,967 | INFO     | monitor loop #401: job 0:6837875347 is in state 'finished'
[2025-10-11 22:43:37] 2025-10-11 20:40:24,967 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 22:43:37] 2025-10-11 20:40:26,798 | INFO     | time since job start (5900s) is within the limit (172800.0s)
[2025-10-11 22:43:37] 2025-10-11 20:40:27,478 | INFO     | monitor loop #402: job 0:6837875347 is in state 'finished'
[2025-10-11 22:43:37] 2025-10-11 20:40:27,478 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 22:43:37] 2025-10-11 20:40:28,805 | INFO     | time since job start (5902s) is within the limit (172800.0s)
[2025-10-11 22:43:37] 2025-10-11 20:40:29,983 | INFO     | monitor loop #403: job 0:6837875347 is in state 'finished'
[2025-10-11 22:43:37] 2025-10-11 20:40:29,983 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 22:43:37] 2025-10-11 20:40:30,812 | INFO     | time since job start (5904s) is within the limit (172800.0s)
[2025-10-11 22:43:37] 2025-10-11 20:40:32,488 | INFO     | monitor loop #404: job 0:6837875347 is in state 'finished'
[2025-10-11 22:43:37] 2025-10-11 20:40:32,488 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 22:43:37] 2025-10-11 20:40:32,818 | INFO     | time since job start (5906s) is within the limit (172800.0s)
[2025-10-11 22:43:37] 2025-10-11 20:40:34,825 | INFO     | time since job start (5908s) is within the limit (172800.0s)
[2025-10-11 22:43:37] 2025-10-11 20:40:34,993 | INFO     | monitor loop #405: job 0:6837875347 is in state 'finished'
[2025-10-11 22:43:37] 2025-10-11 20:40:34,993 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 22:43:37] 2025-10-11 20:40:36,832 | INFO     | time since job start (5910s) is within the limit (172800.0s)
[2025-10-11 22:43:37] 2025-10-11 20:40:37,501 | INFO     | monitor loop #406: job 0:6837875347 is in state 'finished'
[2025-10-11 22:43:37] 2025-10-11 20:40:37,501 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 22:43:37] 2025-10-11 20:40:38,841 | INFO     | time since job start (5912s) is within the limit (172800.0s)
[2025-10-11 22:43:37] 2025-10-11 20:40:39,223 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-11 22:43:37] 2025-10-11 20:40:39,243 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2965.745312500001
[2025-10-11 22:43:37] 2025-10-11 20:40:39,264 | INFO     | using path: /scratch/.boinc/slots/0/PanDA_Pilot-6837875347/memory_monitor_summary.json (trf name=prmon)
[2025-10-11 22:43:37] 2025-10-11 20:40:39,265 | INFO     | extracted standard info from prmon json
[2025-10-11 22:43:37] 2025-10-11 20:40:39,265 | INFO     | extracted standard memory fields from prmon json
[2025-10-11 22:43:37] 2025-10-11 20:40:39,265 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-11 22:43:37] 2025-10-11 20:40:39,266 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-11 22:43:37] 2025-10-11 20:40:39,266 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-11 22:43:37] 2025-10-11 20:40:39,267 | INFO     | fitting pss+swap vs Time
[2025-10-11 22:43:37] 2025-10-11 20:40:39,268 | INFO     | sum of square deviations: 204155053.6091957
[2025-10-11 22:43:37] 2025-10-11 20:40:39,268 | INFO     | sum of deviations: 15128485241.54022
[2025-10-11 22:43:37] 2025-10-11 20:40:39,268 | INFO     | mean x: 1760212418.1264367
[2025-10-11 22:43:37] 2025-10-11 20:40:39,268 | INFO     | mean y: 2645694.6781609193
[2025-10-11 22:43:37] 2025-10-11 20:40:39,268 | INFO     | -- intersect: -130434231173.31703
[2025-10-11 22:43:37] 2025-10-11 20:40:39,268 | INFO     | intersect: -130434231173.31703
[2025-10-11 22:43:37] 2025-10-11 20:40:39,268 | INFO     | chi2: 0.9011548637187381
[2025-10-11 22:43:37] 2025-10-11 20:40:39,268 | INFO     | -- intersect: -130434231173.31703
[2025-10-11 22:43:37] 2025-10-11 20:40:39,269 | INFO     | current memory leak: 74.10 B/s (using 87 data points, chi2=0.90)
[2025-10-11 22:43:37] 2025-10-11 20:40:39,269 | INFO     | could have reported an average CPU frequency of 2867 MHz (7 samples)
[2025-10-11 22:43:37] 2025-10-11 20:40:39,269 | INFO     | ..............................
[2025-10-11 22:43:37] 2025-10-11 20:40:39,269 | INFO     | . Timing measurements:
[2025-10-11 22:43:37] 2025-10-11 20:40:39,269 | INFO     | . get job = 0 s
[2025-10-11 22:43:37] 2025-10-11 20:40:39,269 | INFO     | . initial setup = 4 s
[2025-10-11 22:43:37] 2025-10-11 20:40:39,269 | INFO     | . payload setup = 46 s
[2025-10-11 22:43:37] 2025-10-11 20:40:39,269 | INFO     | . stage-in = 0 s
[2025-10-11 22:43:37] 2025-10-11 20:40:39,269 | INFO     | . payload execution = 5757 s
[2025-10-11 22:43:37] 2025-10-11 20:40:39,276 | INFO     | . stage-out = 0 s
[2025-10-11 22:43:37] 2025-10-11 20:40:39,276 | INFO     | . log creation = 0 s
[2025-10-11 22:43:37] 2025-10-11 20:40:39,276 | INFO     | ..............................
[2025-10-11 22:43:37] 2025-10-11 20:40:39,451 | INFO     | 
[2025-10-11 22:43:37] 2025-10-11 20:40:39,451 | INFO     | job summary report
[2025-10-11 22:43:37] 2025-10-11 20:40:39,451 | INFO     | --------------------------------------------------
[2025-10-11 22:43:37] 2025-10-11 20:40:39,451 | INFO     | PanDA job id: 6837875347
[2025-10-11 22:43:37] 2025-10-11 20:40:39,451 | INFO     | task id: 46676269
[2025-10-11 22:43:37] 2025-10-11 20:40:39,451 | INFO     | errors: (none)
[2025-10-11 22:43:37] 2025-10-11 20:40:39,451 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-11 22:43:37] 2025-10-11 20:40:39,451 | INFO     | pilot state: finished 
[2025-10-11 22:43:37] 2025-10-11 20:40:39,451 | INFO     | transexitcode: 0
[2025-10-11 22:43:37] 2025-10-11 20:40:39,451 | INFO     | exeerrorcode: 0
[2025-10-11 22:43:37] 2025-10-11 20:40:39,451 | INFO     | exeerrordiag: 
[2025-10-11 22:43:37] 2025-10-11 20:40:39,451 | INFO     | exitcode: 0
[2025-10-11 22:43:37] 2025-10-11 20:40:39,451 | INFO     | exitmsg: OK
[2025-10-11 22:43:37] 2025-10-11 20:40:39,451 | INFO     | cpuconsumptiontime: 37398 s
[2025-10-11 22:43:37] 2025-10-11 20:40:39,452 | INFO     | nevents: 400
[2025-10-11 22:43:37] 2025-10-11 20:40:39,452 | INFO     | neventsw: 0
[2025-10-11 22:43:37] 2025-10-11 20:40:39,452 | INFO     | pid: 208967
[2025-10-11 22:43:37] 2025-10-11 20:40:39,452 | INFO     | pgrp: 208967
[2025-10-11 22:43:37] 2025-10-11 20:40:39,452 | INFO     | corecount: 12
[2025-10-11 22:43:37] 2025-10-11 20:40:39,452 | INFO     | event service: False
[2025-10-11 22:43:37] 2025-10-11 20:40:39,452 | INFO     | sizes: {0: 2348631, 1: 2348886, 2: 2348886, 12: 2348914, 23: 2348942, 34: 2348970, 39: 2349388, 44: 2349416, 5807: 2376155, 5808: 2385155, 5810: 2385211, 5830: 238
[2025-10-11 22:43:37] 2025-10-11 20:40:39,452 | INFO     | --------------------------------------------------
[2025-10-11 22:43:37] 2025-10-11 20:40:39,452 | INFO     | 
[2025-10-11 22:43:37] 2025-10-11 20:40:39,452 | INFO     | executing command: ls -lF /scratch/.boinc/slots/0
[2025-10-11 22:43:37] 2025-10-11 20:40:39,500 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-11 22:43:37] 2025-10-11 20:40:39,500 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-11 22:43:37] 2025-10-11 20:40:39,500 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-11 22:43:37] 2025-10-11 20:40:39,500 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-11 22:43:37] 2025-10-11 20:40:39,500 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-11 22:43:37] 2025-10-11 20:40:39,500 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-11 22:43:37] 2025-10-11 20:40:39,501 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-11 22:43:37] 2025-10-11 20:40:39,501 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-11 22:43:37] 2025-10-11 20:40:39,501 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-11 22:43:37] 2025-10-11 20:40:39,501 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-11 22:43:37] 2025-10-11 20:40:39,501 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-11 22:43:37] 2025-10-11 20:40:39,501 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-11 22:43:37] 2025-10-11 20:40:39,501 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-11 22:43:37] 2025-10-11 20:40:39,501 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-11 22:43:37] 2025-10-11 20:40:39,501 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-11 22:43:37] 2025-10-11 20:40:39,501 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-11 22:43:37] 2025-10-11 20:40:39,501 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-11 22:43:37] 2025-10-11 20:40:39,501 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-11 22:43:37] 2025-10-11 20:40:39,501 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-11 22:43:37] 2025-10-11 20:40:39,501 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-11 22:43:37] 2025-10-11 20:40:39,502 | INFO     | job 6837875347 has completed (purged errors)
[2025-10-11 22:43:37] 2025-10-11 20:40:39,502 | INFO     | overall cleanup function is called
[2025-10-11 22:43:37] 2025-10-11 20:40:40,516 | INFO     | --- collectZombieJob: --- 10, [208967]
[2025-10-11 22:43:37] 2025-10-11 20:40:40,516 | INFO     | zombie collector waiting for pid 208967
[2025-10-11 22:43:37] 2025-10-11 20:40:40,516 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-11 22:43:37] 2025-10-11 20:40:40,516 | INFO     | collected zombie processes
[2025-10-11 22:43:37] 2025-10-11 20:40:40,516 | INFO     | will attempt to kill all subprocesses of pid=208967
[2025-10-11 22:43:37] 2025-10-11 20:40:41,286 | INFO     | process IDs to be killed: [208967] (in reverse order)
[2025-10-11 22:43:37] 2025-10-11 20:40:41,629 | WARNING  | found no corresponding commands to process id(s)
[2025-10-11 22:43:37] 2025-10-11 20:40:41,630 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-11 22:43:37] 2025-10-11 20:40:41,661 | INFO     | did not find any defunct processes belonging to 208967
[2025-10-11 22:43:37] 2025-10-11 20:40:41,721 | INFO     | did not find any defunct processes belonging to 208967
[2025-10-11 22:43:37] 2025-10-11 20:40:41,721 | INFO     | ready for new job
[2025-10-11 22:43:37] 2025-10-11 20:40:41,726 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-11 22:43:37] 2025-10-11 20:40:41,728 | INFO     | ***************************************
[2025-10-11 22:43:37] 2025-10-11 20:40:41,728 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-11 22:43:37] 2025-10-11 20:40:41,728 | INFO     | ***************************************
[2025-10-11 22:43:37] 2025-10-11 20:40:41,728 | INFO     | 
[2025-10-11 22:43:37] 2025-10-11 20:40:41,742 | INFO     | architecture information:
[2025-10-11 22:43:37] 2025-10-11 20:40:41,745 | INFO     | executing command: cat /etc/os-release
[2025-10-11 22:43:37] 2025-10-11 20:40:41,903 | INFO     | cat /etc/os-release:
[2025-10-11 22:43:37] NAME="CentOS Linux"
[2025-10-11 22:43:37] VERSION="7 (Core)"
[2025-10-11 22:43:37] ID="centos"
[2025-10-11 22:43:37] ID_LIKE="rhel fedora"
[2025-10-11 22:43:37] VERSION_ID="7"
[2025-10-11 22:43:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-11 22:43:37] ANSI_COLOR="0;31"
[2025-10-11 22:43:37] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-11 22:43:37] HOME_URL="https://www.centos.org/"
[2025-10-11 22:43:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-11 22:43:37] 
[2025-10-11 22:43:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-11 22:43:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-11 22:43:37] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-11 22:43:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-11 22:43:37] 
[2025-10-11 22:43:37] 2025-10-11 20:40:41,904 | INFO     | ***************************************
[2025-10-11 22:43:37] 2025-10-11 20:40:42,407 | INFO     | executing command: df -mP /scratch/.boinc/slots/0
[2025-10-11 22:43:37] 2025-10-11 20:40:42,524 | INFO     | sufficient remaining disk space (1661035610112 B)
[2025-10-11 22:43:37] 2025-10-11 20:40:42,525 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-11 22:43:37] 2025-10-11 20:40:42,525 | INFO     | current server update state: UPDATING_FINAL
[2025-10-11 22:43:37] 2025-10-11 20:40:42,525 | INFO     | update_server=False
[2025-10-11 22:43:37] 2025-10-11 20:40:42,525 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-11 22:43:37] 2025-10-11 20:40:42,644 | INFO     | all job control threads have been joined
[2025-10-11 22:43:37] 2025-10-11 20:40:43,043 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-11 22:43:37] 2025-10-11 20:40:43,094 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-11 22:43:37] 2025-10-11 20:40:43,197 | INFO     | all data control threads have been joined
[2025-10-11 22:43:37] 2025-10-11 20:40:43,527 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-11 22:43:37] 2025-10-11 20:40:43,527 | INFO     | aborting loop
[2025-10-11 22:43:37] 2025-10-11 20:40:43,531 | INFO     | [job] retrieve thread has finished
[2025-10-11 22:43:37] 2025-10-11 20:40:43,650 | INFO     | [job] control thread has finished
[2025-10-11 22:43:37] 2025-10-11 20:40:44,041 | INFO     | all payload control threads have been joined
[2025-10-11 22:43:37] 2025-10-11 20:40:44,066 | INFO     | [payload] execute_payloads thread has finished
[2025-10-11 22:43:37] 2025-10-11 20:40:44,202 | INFO     | [data] control thread has finished
[2025-10-11 22:43:37] 2025-10-11 20:40:44,370 | INFO     | [payload] validate_post thread has finished
[2025-10-11 22:43:37] 2025-10-11 20:40:44,416 | INFO     | [payload] failed_post thread has finished
[2025-10-11 22:43:37] 2025-10-11 20:40:44,426 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-11 22:43:37] 2025-10-11 20:40:44,451 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-11 22:43:37] 2025-10-11 20:40:44,529 | INFO     | [data] copytool_in thread has finished
[2025-10-11 22:43:37] 2025-10-11 20:40:44,533 | INFO     | [job] job monitor thread has finished
[2025-10-11 22:43:37] 2025-10-11 20:40:44,812 | INFO     | [payload] validate_pre thread has finished
[2025-10-11 22:43:37] 2025-10-11 20:40:44,958 | INFO     | [job] validate thread has finished
[2025-10-11 22:43:37] 2025-10-11 20:40:45,030 | INFO     | [job] create_data_payload thread has finished
[2025-10-11 22:43:37] 2025-10-11 20:40:45,047 | INFO     | [payload] control thread has finished
[2025-10-11 22:43:37] 2025-10-11 20:40:45,050 | INFO     | [data] copytool_out thread has finished
[2025-10-11 22:43:37] 2025-10-11 20:40:45,431 | INFO     | [job] queue monitor thread has finished
[2025-10-11 22:43:37] 2025-10-11 20:40:47,104 | INFO     | [data] queue_monitor thread has finished
[2025-10-11 22:43:37] 2025-10-11 20:41:12,899 | INFO     | PID=191890 has CPU usage=5.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-11 22:43:37] 2025-10-11 20:41:12,900 | INFO     | .. there are 85 such processes running
[2025-10-11 22:43:37] 2025-10-11 20:41:12,900 | INFO     | found 0 job(s) in 20 queues
[2025-10-11 22:43:37] 2025-10-11 20:41:12,900 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-11 22:43:37] 2025-10-11 20:41:12,900 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-11 22:43:37] 2025-10-11 20:41:15,283 | INFO     | [monitor] cgroup control has ended
[2025-10-11 22:43:37] 2025-10-11 20:41:16,292 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140448228644672)>', '<ExcThread(monitor, started 140447435450112)>']
[2025-10-11 22:43:37] 2025-10-11 20:41:16,923 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-11 22:43:37] 2025-10-11 20:41:16,924 | INFO     | [monitor] control thread has ended
[2025-10-11 22:43:37] 2025-10-11 20:41:21,317 | INFO     | all workflow threads have been joined
[2025-10-11 22:43:37] 2025-10-11 20:41:21,318 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-11 22:43:37] 2025-10-11 20:41:21,318 | INFO     | traces error code: 0
[2025-10-11 22:43:37] 2025-10-11 20:41:21,318 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-11 22:43:37] 2025-10-11 20:41:21,529 [wrapper] ==== pilot stdout END ====
[2025-10-11 22:43:37] 2025-10-11 20:41:21,535 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-11 22:43:37] 2025-10-11 20:41:21,544 [wrapper] pilotpid: 191890
[2025-10-11 22:43:37] 2025-10-11 20:41:21,556 [wrapper] Pilot exit status: 0
[2025-10-11 22:43:37] 2025-10-11 20:41:21,640 [wrapper] pandaids: 6837875347
[2025-10-11 22:43:37] 2025-10-11 20:41:21,788 [wrapper] cleanup supervisor_pilot  625705 191891
[2025-10-11 22:43:37] 2025-10-11 20:41:21,792 [wrapper] Test setup, not cleaning
[2025-10-11 22:43:37] 2025-10-11 20:41:21,801 [wrapper] apfmon messages muted
[2025-10-11 22:43:37] 2025-10-11 20:41:21,825 [wrapper] ==== wrapper stdout END ====
[2025-10-11 22:43:37] 2025-10-11 20:41:21,865 [wrapper] ==== wrapper stderr END ====
[2025-10-11 22:43:37]  *** Error codes and diagnostics ***
[2025-10-11 22:43:37]     "exeErrorCode": 0,
[2025-10-11 22:43:37]     "exeErrorDiag": "",
[2025-10-11 22:43:37]     "pilotErrorCode": 0,
[2025-10-11 22:43:37]     "pilotErrorDiag": "",
[2025-10-11 22:43:37]  *** Listing of results directory ***
[2025-10-11 22:43:37] total 410028
[2025-10-11 22:43:37] -rw-r--r-- 1 boinc boinc    557409 Oct 11 02:00 pilot3.tar.gz
[2025-10-11 22:43:37] -rw-r--r-- 1 boinc boinc      5112 Oct 11 02:05 queuedata.json
[2025-10-11 22:43:37] -rwx------ 1 boinc boinc     36292 Oct 11 02:05 runpilot2-wrapper.sh
[2025-10-11 22:43:37] -rw-r--r-- 1 boinc boinc       100 Oct 11 20:59 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-11 22:43:37] -rwxr-xr-x 1 boinc boinc      7986 Oct 11 20:59 run_atlas
[2025-10-11 22:43:37] -rw-r--r-- 1 boinc boinc       105 Oct 11 20:59 job.xml
[2025-10-11 22:43:37] -rw-r--r-- 2 boinc boinc 222535664 Oct 11 20:59 EVNT.46676267._001912.pool.root.1
[2025-10-11 22:43:37] -rw-r--r-- 1 boinc boinc      6665 Oct 11 20:59 init_data.xml
[2025-10-11 22:43:37] -rw-r--r-- 2 boinc boinc     15120 Oct 11 20:59 start_atlas.sh
[2025-10-11 22:43:37] drwxrwx--x 2 boinc boinc      4096 Oct 11 20:59 shared
[2025-10-11 22:43:37] -rw-r--r-- 2 boinc boinc    569683 Oct 11 20:59 input.tar.gz
[2025-10-11 22:43:37] -rw-r--r-- 1 boinc boinc         0 Oct 11 20:59 boinc_lockfile
[2025-10-11 22:43:37] -rw-r--r-- 1 boinc boinc      2550 Oct 11 21:00 pandaJob.out
[2025-10-11 22:43:37] -rw------- 1 boinc boinc    975520 Oct 11 21:02 agis_schedconf.cvmfs.json
[2025-10-11 22:43:37] -rw------- 1 boinc boinc   1560580 Oct 11 21:02 agis_ddmendpoints.agis.ALL.json
[2025-10-11 22:43:37] drwx------ 5 boinc boinc      4096 Oct 11 21:02 pilot3
[2025-10-11 22:43:37] -rw------- 1 boinc boinc 191010461 Oct 11 22:39 HITS.46676269._047349.pool.root.1
[2025-10-11 22:43:37] -rw-r--r-- 1 boinc boinc       529 Oct 11 22:39 boinc_task_state.xml
[2025-10-11 22:43:37] -rw------- 1 boinc boinc      1023 Oct 11 22:40 memory_monitor_summary.json
[2025-10-11 22:43:37] -rw------- 1 boinc boinc    401516 Oct 11 22:40 log.46676269._047349.job.log.tgz.1
[2025-10-11 22:43:37] -rw------- 1 boinc boinc      7785 Oct 11 22:40 heartbeat.json
[2025-10-11 22:43:37] -rw------- 1 boinc boinc        95 Oct 11 22:41 pilot_heartbeat.json
[2025-10-11 22:43:37] -rw------- 1 boinc boinc      4826 Oct 11 22:41 pilotlog.txt
[2025-10-11 22:43:37] -rw------- 1 boinc boinc    805945 Oct 11 22:41 log.46676269._047349.job.log.1
[2025-10-11 22:43:37] -rw------- 1 boinc boinc       357 Oct 11 22:41 output.list
[2025-10-11 22:43:37] -rw-r--r-- 1 boinc boinc       620 Oct 11 22:41 runtime_log
[2025-10-11 22:43:37] -rw------- 1 boinc boinc   1228800 Oct 11 22:41 result.tar.gz
[2025-10-11 22:43:37] -rw-r--r-- 1 boinc boinc      8764 Oct 11 22:41 runtime_log.err
[2025-10-11 22:43:37] -rw------- 1 boinc boinc       663 Oct 11 22:41 MJ0MDmYIcR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmEneNDmseepEm.diag
[2025-10-11 22:43:37] -rw-r--r-- 1 boinc boinc        26 Oct 11 22:43 wrapper_checkpoint.txt
[2025-10-11 22:43:37] -rw-r--r-- 1 boinc boinc      8192 Oct 11 22:43 boinc_mmap_file
[2025-10-11 22:43:37] -rw-r--r-- 1 boinc boinc     22383 Oct 11 22:43 stderr.txt
[2025-10-11 22:43:37] HITS file was successfully produced:
[2025-10-11 22:43:37] -rw------- 1 boinc boinc 191010461 Oct 11 22:39 shared/HITS.pool.root.1
[2025-10-11 22:43:37]  *** Contents of shared directory: ***
[2025-10-11 22:43:37] total 405640
[2025-10-11 22:43:37] -rw-r--r-- 2 boinc boinc 222535664 Oct 11 20:59 ATLAS.root_0
[2025-10-11 22:43:37] -rw-r--r-- 2 boinc boinc     15120 Oct 11 20:59 start_atlas.sh
[2025-10-11 22:43:37] -rw-r--r-- 2 boinc boinc    569683 Oct 11 20:59 input.tar.gz
[2025-10-11 22:43:37] -rw------- 1 boinc boinc 191010461 Oct 11 22:39 HITS.pool.root.1
[2025-10-11 22:43:37] -rw------- 1 boinc boinc   1228800 Oct 11 22:41 result.tar.gz
22:43:39 (179399): run_atlas exited; CPU time 37678.374625
22:43:39 (179399): called boinc_finish(0)

</stderr_txt>
]]>

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