Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
22:13:30 (2675583): wrapper (7.7.26015): starting
22:13:30 (2675583): wrapper: running run_atlas (--nthreads 3)
[2025-10-11 22:13:30] Arguments: --nthreads 3
[2025-10-11 22:13:30] Threads: 3
[2025-10-11 22:13:30] Checking for CVMFS
[2025-10-11 22:13:30] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 22:13:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 22:13:30] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 22:13:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 22:13:30] 2.9.2.0 1718076 3388 68300 151595 3 9 29003688 36864001 0 130560 0 2501903 99.991 110751 1014 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-11 22:13:30] CVMFS is ok
[2025-10-11 22:13:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 22:13:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 22:13:30] Further information can be found at the LHC@home message board.
[2025-10-11 22:13:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 22:13:30] Checking for apptainer binary...
[2025-10-11 22:13:30] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 22:13:30] Running /usr/bin/apptainer --version
[2025-10-11 22:13:31] apptainer version 1.4.1-1.1
[2025-10-11 22:13:31] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 22:13:31] thA333
[2025-10-11 22:13:31] apptainer works
[2025-10-11 22:13:31] Set ATHENA_PROC_NUMBER=3
[2025-10-11 22:13:31] Set ATHENA_CORE_NUMBER=3
[2025-10-11 22:13:31] Starting ATLAS job with PandaID=6838116638
[2025-10-11 22:13:31] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-11 23:41:59]  *** The last 200 lines of the pilot log: ***
[2025-10-11 23:41:59] 2025-10-11 21:41:25,657 | INFO     | number of running child processes to parent process 2685768: 1
[2025-10-11 23:41:59] 2025-10-11 21:41:25,657 | INFO     | maximum number of monitored processes: 6
[2025-10-11 23:41:59] 2025-10-11 21:41:25,657 | INFO     | aborting job monitoring since job object (job id=6838116638) has expired
[2025-10-11 23:41:59] 2025-10-11 21:41:26,633 | INFO     | --- collectZombieJob: --- 10, [2685768]
[2025-10-11 23:41:59] 2025-10-11 21:41:26,633 | INFO     | zombie collector waiting for pid 2685768
[2025-10-11 23:41:59] 2025-10-11 21:41:26,633 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-11 23:41:59] 2025-10-11 21:41:26,634 | INFO     | collected zombie processes
[2025-10-11 23:41:59] 2025-10-11 21:41:26,634 | INFO     | will attempt to kill all subprocesses of pid=2685768
[2025-10-11 23:41:59] 2025-10-11 21:41:26,671 | INFO     | process IDs to be killed: [2685768] (in reverse order)
[2025-10-11 23:41:59] 2025-10-11 21:41:26,696 | WARNING  | found no corresponding commands to process id(s)
[2025-10-11 23:41:59] 2025-10-11 21:41:26,696 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-11 23:41:59] 2025-10-11 21:41:26,697 | INFO     | did not find any defunct processes belonging to 2685768
[2025-10-11 23:41:59] 2025-10-11 21:41:26,698 | INFO     | did not find any defunct processes belonging to 2685768
[2025-10-11 23:41:59] 2025-10-11 21:41:26,698 | INFO     | ready for new job
[2025-10-11 23:41:59] 2025-10-11 21:41:26,698 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-11 23:41:59] 2025-10-11 21:41:26,698 | INFO     | ***************************************
[2025-10-11 23:41:59] 2025-10-11 21:41:26,698 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-11 23:41:59] 2025-10-11 21:41:26,699 | INFO     | ***************************************
[2025-10-11 23:41:59] 2025-10-11 21:41:26,699 | INFO     | 
[2025-10-11 23:41:59] 2025-10-11 21:41:26,699 | INFO     | architecture information:
[2025-10-11 23:41:59] 2025-10-11 21:41:26,699 | INFO     | executing command: cat /etc/os-release
[2025-10-11 23:41:59] 2025-10-11 21:41:26,708 | INFO     | cat /etc/os-release:
[2025-10-11 23:41:59] NAME="CentOS Linux"
[2025-10-11 23:41:59] VERSION="7 (Core)"
[2025-10-11 23:41:59] ID="centos"
[2025-10-11 23:41:59] ID_LIKE="rhel fedora"
[2025-10-11 23:41:59] VERSION_ID="7"
[2025-10-11 23:41:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-11 23:41:59] ANSI_COLOR="0;31"
[2025-10-11 23:41:59] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-11 23:41:59] HOME_URL="https://www.centos.org/"
[2025-10-11 23:41:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-11 23:41:59] 
[2025-10-11 23:41:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-11 23:41:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-11 23:41:59] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-11 23:41:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-11 23:41:59] 
[2025-10-11 23:41:59] 2025-10-11 21:41:26,708 | INFO     | ***************************************
[2025-10-11 23:41:59] 2025-10-11 21:41:27,212 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-11 23:41:59] 2025-10-11 21:41:27,225 | INFO     | sufficient remaining disk space (230744391680 B)
[2025-10-11 23:41:59] 2025-10-11 21:41:27,225 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-11 23:41:59] 2025-10-11 21:41:27,225 | INFO     | current server update state: UPDATING_FINAL
[2025-10-11 23:41:59] 2025-10-11 21:41:27,225 | INFO     | update_server=False
[2025-10-11 23:41:59] 2025-10-11 21:41:27,225 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-11 23:41:59] 2025-10-11 21:41:27,225 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-11 23:41:59] 2025-10-11 21:41:27,225 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-11 23:41:59] 2025-10-11 21:41:27,225 | INFO     | aborting loop
[2025-10-11 23:41:59] 2025-10-11 21:41:27,225 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-11 23:41:59] 2025-10-11 21:41:27,226 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-11 23:41:59] 2025-10-11 21:41:27,478 | INFO     | all data control threads have been joined
[2025-10-11 23:41:59] 2025-10-11 21:41:27,591 | INFO     | all payload control threads have been joined
[2025-10-11 23:41:59] 2025-10-11 21:41:27,591 | INFO     | all job control threads have been joined
[2025-10-11 23:41:59] 2025-10-11 21:41:28,230 | INFO     | [job] retrieve thread has finished
[2025-10-11 23:41:59] 2025-10-11 21:41:28,231 | INFO     | [job] queue monitor thread has finished
[2025-10-11 23:41:59] 2025-10-11 21:41:28,232 | INFO     | [job] job monitor thread has finished
[2025-10-11 23:41:59] 2025-10-11 21:41:28,279 | INFO     | [data] copytool_in thread has finished
[2025-10-11 23:41:59] 2025-10-11 21:41:28,444 | INFO     | [payload] validate_post thread has finished
[2025-10-11 23:41:59] 2025-10-11 21:41:28,484 | INFO     | [data] control thread has finished
[2025-10-11 23:41:59] 2025-10-11 21:41:28,597 | INFO     | [job] control thread has finished
[2025-10-11 23:41:59] 2025-10-11 21:41:28,598 | INFO     | [payload] control thread has finished
[2025-10-11 23:41:59] 2025-10-11 21:41:28,605 | INFO     | [payload] execute_payloads thread has finished
[2025-10-11 23:41:59] 2025-10-11 21:41:28,956 | INFO     | [job] create_data_payload thread has finished
[2025-10-11 23:41:59] 2025-10-11 21:41:28,985 | INFO     | [job] validate thread has finished
[2025-10-11 23:41:59] 2025-10-11 21:41:29,063 | INFO     | [payload] validate_pre thread has finished
[2025-10-11 23:41:59] 2025-10-11 21:41:29,227 | INFO     | [data] copytool_out thread has finished
[2025-10-11 23:41:59] 2025-10-11 21:41:29,556 | INFO     | [payload] failed_post thread has finished
[2025-10-11 23:41:59] 2025-10-11 21:41:31,232 | INFO     | [data] queue_monitor thread has finished
[2025-10-11 23:41:59] 2025-10-11 21:41:37,439 | INFO     | job.realtimelogging is not enabled
[2025-10-11 23:41:59] 2025-10-11 21:41:38,445 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-11 23:41:59] 2025-10-11 21:41:52,253 | INFO     | [monitor] cgroup control has ended
[2025-10-11 23:41:59] 2025-10-11 21:41:53,916 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140207086847808)>', '<ExcThread(monitor, started 140206296516352)>']
[2025-10-11 23:41:59] 2025-10-11 21:41:57,537 | INFO     | PID=2679319 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-11 23:41:59] 2025-10-11 21:41:57,537 | INFO     | found 0 job(s) in 20 queues
[2025-10-11 23:41:59] 2025-10-11 21:41:57,538 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-11 23:41:59] 2025-10-11 21:41:57,538 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-11 23:41:59] 2025-10-11 21:41:57,538 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-11 23:41:59] 2025-10-11 21:41:57,538 | INFO     | [monitor] control thread has ended
[2025-10-11 23:41:59] 2025-10-11 21:41:58,938 | INFO     | all workflow threads have been joined
[2025-10-11 23:41:59] 2025-10-11 21:41:58,938 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-11 23:41:59] 2025-10-11 21:41:58,939 | INFO     | traces error code: 0
[2025-10-11 23:41:59] 2025-10-11 21:41:58,940 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-11 23:41:59] 2025-10-11 21:41:58,985 [wrapper] ==== pilot stdout END ====
[2025-10-11 23:41:59] 2025-10-11 21:41:58,989 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-11 23:41:59] 2025-10-11 21:41:58,992 [wrapper] pilotpid: 2679319
[2025-10-11 23:41:59] 2025-10-11 21:41:58,994 [wrapper] Pilot exit status: 0
[2025-10-11 23:41:59] 2025-10-11 21:41:59,001 [wrapper] pandaids: 6838116638
[2025-10-11 23:41:59] 2025-10-11 21:41:59,018 [wrapper] cleanup supervisor_pilot 2698558 2679320
[2025-10-11 23:41:59] 2025-10-11 21:41:59,020 [wrapper] Test setup, not cleaning
[2025-10-11 23:41:59] 2025-10-11 21:41:59,023 [wrapper] apfmon messages muted
[2025-10-11 23:41:59] 2025-10-11 21:41:59,025 [wrapper] ==== wrapper stdout END ====
[2025-10-11 23:41:59] 2025-10-11 21:41:59,028 [wrapper] ==== wrapper stderr END ====
[2025-10-11 23:41:59]  *** Error codes and diagnostics ***
[2025-10-11 23:41:59]     "exeErrorCode": 0,
[2025-10-11 23:41:59]     "exeErrorDiag": "",
[2025-10-11 23:41:59]     "pilotErrorCode": 0,
[2025-10-11 23:41:59]     "pilotErrorDiag": "",
[2025-10-11 23:41:59]  *** Listing of results directory ***
[2025-10-11 23:41:59] total 404824
[2025-10-11 23:41:59] -rw-r--r-- 1 boinc boinc    557409 Oct 11 06:32 pilot3.tar.gz
[2025-10-11 23:41:59] -rw-r--r-- 1 boinc boinc      5112 Oct 11 06:58 queuedata.json
[2025-10-11 23:41:59] -rwx------ 1 boinc boinc     36292 Oct 11 06:58 runpilot2-wrapper.sh
[2025-10-11 23:41:59] -rw-r--r-- 1 boinc boinc       100 Oct 11 22:13 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-11 23:41:59] -rwxr-xr-x 1 boinc boinc      7986 Oct 11 22:13 run_atlas
[2025-10-11 23:41:59] -rw-r--r-- 1 boinc boinc       105 Oct 11 22:13 job.xml
[2025-10-11 23:41:59] -rw-r--r-- 2 boinc boinc 221890710 Oct 11 22:13 EVNT.46676267._002070.pool.root.1
[2025-10-11 23:41:59] -rw-r--r-- 2 boinc boinc    569682 Oct 11 22:13 input.tar.gz
[2025-10-11 23:41:59] -rw-r--r-- 2 boinc boinc     15120 Oct 11 22:13 start_atlas.sh
[2025-10-11 23:41:59] drwxrwx--x 2 boinc boinc      4096 Oct 11 22:13 shared
[2025-10-11 23:41:59] -rw-r--r-- 1 boinc boinc         0 Oct 11 22:13 boinc_setup_complete
[2025-10-11 23:41:59] -rw-r--r-- 1 boinc boinc      6197 Oct 11 22:13 init_data.xml
[2025-10-11 23:41:59] -rw-r--r-- 1 boinc boinc         0 Oct 11 22:13 boinc_lockfile
[2025-10-11 23:41:59] -rw-r--r-- 1 boinc boinc      2550 Oct 11 22:13 pandaJob.out
[2025-10-11 23:41:59] -rw------- 1 boinc boinc    975528 Oct 11 22:13 agis_schedconf.cvmfs.json
[2025-10-11 23:41:59] -rw------- 1 boinc boinc   1560580 Oct 11 22:13 agis_ddmendpoints.agis.ALL.json
[2025-10-11 23:41:59] drwx------ 5 boinc boinc      4096 Oct 11 22:13 pilot3
[2025-10-11 23:41:59] -rw------- 1 boinc boinc 186680584 Oct 11 23:40 HITS.46676269._051515.pool.root.1
[2025-10-11 23:41:59] -rw-r--r-- 1 boinc boinc       529 Oct 11 23:40 boinc_task_state.xml
[2025-10-11 23:41:59] -rw------- 1 boinc boinc        95 Oct 11 23:41 pilot_heartbeat.json
[2025-10-11 23:41:59] -rw------- 1 boinc boinc      1019 Oct 11 23:41 memory_monitor_summary.json
[2025-10-11 23:41:59] -rw------- 1 boinc boinc    270274 Oct 11 23:41 log.46676269._051515.job.log.tgz.1
[2025-10-11 23:41:59] -rw------- 1 boinc boinc      7761 Oct 11 23:41 heartbeat.json
[2025-10-11 23:41:59] -rw-r--r-- 1 boinc boinc      8192 Oct 11 23:41 boinc_mmap_file
[2025-10-11 23:41:59] -rw-r--r-- 1 boinc boinc        27 Oct 11 23:41 wrapper_checkpoint.txt
[2025-10-11 23:41:59] -rw------- 1 boinc boinc      4824 Oct 11 23:41 pilotlog.txt
[2025-10-11 23:41:59] -rw------- 1 boinc boinc    769807 Oct 11 23:41 log.46676269._051515.job.log.1
[2025-10-11 23:41:59] -rw------- 1 boinc boinc       357 Oct 11 23:41 output.list
[2025-10-11 23:41:59] -rw-r--r-- 1 boinc boinc       620 Oct 11 23:41 runtime_log
[2025-10-11 23:41:59] -rw------- 1 boinc boinc   1054720 Oct 11 23:41 result.tar.gz
[2025-10-11 23:41:59] -rw-r--r-- 1 boinc boinc      8777 Oct 11 23:41 runtime_log.err
[2025-10-11 23:41:59] -rw------- 1 boinc boinc       658 Oct 11 23:41 rLkKDmzrgR8n9Rq4apOajLDm4fhM0noT9bVof3QYDmCGRMDmoxHXCn.diag
[2025-10-11 23:41:59] -rw-r--r-- 1 boinc boinc     11061 Oct 11 23:41 stderr.txt
[2025-10-11 23:41:59] HITS file was successfully produced:
[2025-10-11 23:41:59] -rw------- 1 boinc boinc 186680584 Oct 11 23:40 shared/HITS.pool.root.1
[2025-10-11 23:41:59]  *** Contents of shared directory: ***
[2025-10-11 23:41:59] total 400616
[2025-10-11 23:41:59] -rw-r--r-- 2 boinc boinc 221890710 Oct 11 22:13 ATLAS.root_0
[2025-10-11 23:41:59] -rw-r--r-- 2 boinc boinc    569682 Oct 11 22:13 input.tar.gz
[2025-10-11 23:41:59] -rw-r--r-- 2 boinc boinc     15120 Oct 11 22:13 start_atlas.sh
[2025-10-11 23:41:59] -rw------- 1 boinc boinc 186680584 Oct 11 23:40 HITS.pool.root.1
[2025-10-11 23:41:59] -rw------- 1 boinc boinc   1054720 Oct 11 23:41 result.tar.gz
23:42:00 (2675583): run_atlas exited; CPU time 15050.144237
23:42:00 (2675583): called boinc_finish(0)

</stderr_txt>
]]>

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