Stderr output

<core_client_version>8.2.5</core_client_version>
<![CDATA[
<stderr_txt>
2025-10-11 07:17:57 (40236): vboxwrapper version 26210
2025-10-11 07:17:57 (40236): BOINC client version: 8.2.5
2025-10-11 07:17:57 (40236): Detected: VirtualBox VboxManage Interface (Version: 7.2.2)
2025-10-11 07:17:58 (40236): Successfully copied 'init_data.xml' to the shared directory.
2025-10-11 07:17:58 (40236): Create VM. (boinc_1e1cd28f91d570ca, slot#0)
2025-10-11 07:17:59 (40236): Setting Memory Size for VM. (4300MB)
2025-10-11 07:17:59 (40236): Setting CPU Count for VM. (3)
2025-10-11 07:17:59 (40236): Setting Chipset Options for VM.
2025-10-11 07:17:59 (40236): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-10-11 07:18:00 (40236): Setting Boot Options for VM.
2025-10-11 07:18:00 (40236): Setting Network Configuration for NAT. (Driver: virtio)
2025-10-11 07:18:00 (40236): Enabling VM Network Access.
2025-10-11 07:18:01 (40236): Disabling USB Support for VM.
2025-10-11 07:18:01 (40236): Disabling COM Port Support for VM.
2025-10-11 07:18:01 (40236): Disabling LPT Port Support for VM.
2025-10-11 07:18:01 (40236): Disabling Audio Support for VM.
2025-10-11 07:18:02 (40236): Disabling Clipboard Support for VM.
2025-10-11 07:18:02 (40236): Disabling Drag and Drop Support for VM.
2025-10-11 07:18:02 (40236): Adding storage controller(s) to VM.
2025-10-11 07:18:02 (40236): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-10-11 07:18:03 (40236): Adding VirtualBox Guest Additions to VM.
2025-10-11 07:18:03 (40236): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-10-11 07:18:03 (40236): forwarding host port 52725 to guest port 80
2025-10-11 07:18:04 (40236): Enabling remote desktop for VM.
2025-10-11 07:18:04 (40236): Enabling shared directory for VM.
2025-10-11 07:18:05 (40236): Starting VM using VBoxManage interface. (boinc_1e1cd28f91d570ca, slot#0)
2025-10-11 07:18:10 (40236): Successfully started VM. (PID = '23016')
2025-10-11 07:18:10 (40236): Reporting VM Process ID to BOINC.
2025-10-11 07:18:10 (40236): Guest Log: BIOS: VirtualBox 7.2.2
2025-10-11 07:18:10 (40236): Guest Log: CPUID EDX: 0x178bfbff
2025-10-11 07:18:10 (40236): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-10-11 07:18:10 (40236): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-10-11 07:18:10 (40236): VM state change detected. (old = 'poweredoff', new = 'running')
2025-10-11 07:18:10 (40236): Detected: Web Application Enabled (http://localhost:52725)
2025-10-11 07:18:10 (40236): Detected: Remote Desktop Enabled (localhost:52726)
2025-10-11 07:18:10 (40236): Preference change detected
2025-10-11 07:18:10 (40236): Setting CPU throttle for VM. (100%)
2025-10-11 07:18:10 (40236): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-10-11 07:18:12 (40236): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-10-11 07:18:12 (40236): Guest Log: BIOS: Booting from Hard Disk...
2025-10-11 07:18:15 (40236): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-10-11 07:18:15 (40236): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-10-11 07:18:15 (40236): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-10-11 07:18:15 (40236): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-10-11 07:18:15 (40236): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-10-11 07:18:15 (40236): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-10-11 07:18:15 (40236): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-10-11 07:18:15 (40236): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-10-11 07:18:15 (40236): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-10-11 07:18:15 (40236): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-10-11 07:18:15 (40236): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-10-11 07:18:15 (40236): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-10-11 07:18:15 (40236): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-10-11 07:18:15 (40236): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-10-11 07:18:15 (40236): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-10-11 07:18:15 (40236): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-10-11 07:18:15 (40236): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-10-11 07:18:15 (40236): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-10-11 07:18:15 (40236): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-10-11 07:18:15 (40236): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-10-11 07:18:15 (40236): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-10-11 07:18:15 (40236): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-10-11 07:18:15 (40236): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-10-11 07:18:15 (40236): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-10-11 07:18:15 (40236): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-10-11 07:18:15 (40236): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-10-11 07:18:15 (40236): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-10-11 07:18:15 (40236): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-10-11 07:18:15 (40236): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-10-11 07:18:15 (40236): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-10-11 07:18:15 (40236): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-10-11 07:18:15 (40236): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-10-11 07:18:19 (40236): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-10-11 07:18:19 (40236): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-10-11 07:18:22 (40236): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-10-11 07:18:22 (40236): Guest Log: 00:00:00.000067 main     Log opened 2025-10-11T07:18:19.910700000Z
2025-10-11 07:18:22 (40236): Guest Log: 00:00:00.000126 main     OS Product: Linux
2025-10-11 07:18:22 (40236): Guest Log: 00:00:00.000147 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-10-11 07:18:22 (40236): Guest Log: 00:00:00.000163 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-10-11 07:18:22 (40236): Guest Log: 00:00:00.000178 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-10-11 07:18:22 (40236): Guest Log: 00:00:00.000179 main     Process ID: 1286
2025-10-11 07:18:22 (40236): Guest Log: 00:00:00.000179 main     Package type: LINUX_64BITS_GENERIC
2025-10-11 07:18:22 (40236): Guest Log: 00:00:00.000726 main     5.2.32 r132073 started. Verbose level = 0
2025-10-11 07:18:22 (40236): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-10-11 07:18:22 (40236): Guest Log: [INFO] Mounting shared directory
2025-10-11 07:18:23 (40236): Guest Log: [INFO] Checking for init_data.xml
2025-10-11 07:18:25 (40236): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-10-11 07:18:25 (40236): Guest Log: [INFO] Detected branch: prod
2025-10-11 07:18:25 (40236): Guest Log: This is the prod version of the ATLAS job wrapper
2025-10-11 07:18:25 (40236): Guest Log: Copying input files
2025-10-11 07:18:25 (40236): Guest Log: Copied input files into RunAtlas.
2025-10-11 07:18:25 (40236): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-10-11 07:18:25 (40236): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-10-11 07:18:25 (40236): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-10-11 07:18:25 (40236): Guest Log: Further information can be found at the LHC@home message board.
2025-10-11 07:18:32 (40236): Guest Log: 00:00:10.001724 timesync vgsvcTimeSyncWorker: Radical guest time change: 14 412 058 203 000ns (GuestNow=1 760 181 511 970 262 000 ns GuestLast=1 760 167 099 912 059 000 ns fSetTimeLastLoop=true )
2025-10-11 07:18:33 (40236): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-10-11 07:18:33 (40236): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-10-11 07:18:33 (40236): Guest Log: 2.6.3.0 1564 0 30024 151583 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-10-11 07:18:34 (40236): Guest Log: copied the webapp to /var/www
2025-10-11 07:18:34 (40236): Guest Log: ATHENA_PROC_NUMBER=3
2025-10-11 07:18:34 (40236): Guest Log: ATHENA_CORE_NUMBER=3
2025-10-11 07:18:34 (40236): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-10-11 07:18:34 (40236): Guest Log:  *** Starting ATLAS job. (PandaID=6838116734 taskID=46676269) ***
2025-10-11 08:58:12 (40236): Status Report: Elapsed Time: '6000.000000'
2025-10-11 08:58:12 (40236): Status Report: CPU Time: '17224.859375'
2025-10-11 09:48:41 (40236): Guest Log:  *** Job finished ***
2025-10-11 09:48:41 (40236): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-10-11 09:48:41 (40236): Guest Log: 2025-10-11 13:48:08,562 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-10-11 09:48:41 (40236): Guest Log: 2025-10-11 13:48:08,562 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-10-11 09:48:41 (40236): Guest Log: 2025-10-11 13:48:30,055 | INFO     | [monitor] cgroup control has ended
2025-10-11 09:48:41 (40236): Guest Log: 2025-10-11 13:48:31,062 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140391352276800)>', '<ExcThread(monitor, started 140390367737600)>']
2025-10-11 09:48:41 (40236): Guest Log: 2025-10-11 13:48:31,858 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-10-11 09:48:41 (40236): Guest Log: 2025-10-11 13:48:31,858 | INFO     | [monitor] control thread has ended
2025-10-11 09:48:41 (40236): Guest Log: 2025-10-11 13:48:36,068 | INFO     | all workflow threads have been joined
2025-10-11 09:48:41 (40236): Guest Log: 2025-10-11 13:48:36,068 | INFO     | end of generic workflow (traces error code: 0)
2025-10-11 09:48:41 (40236): Guest Log: 2025-10-11 13:48:36,068 | INFO     | traces error code: 0
2025-10-11 09:48:41 (40236): Guest Log: 2025-10-11 13:48:36,069 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-10-11 09:48:41 (40236): Guest Log: 2025-10-11 13:48:36,128 [wrapper] ==== pilot stdout END ====
2025-10-11 09:48:41 (40236): Guest Log: 2025-10-11 13:48:36,130 [wrapper] ==== wrapper stdout RESUME ====
2025-10-11 09:48:41 (40236): Guest Log: 2025-10-11 13:48:36,132 [wrapper] pilotpid: 5949
2025-10-11 09:48:41 (40236): Guest Log: 2025-10-11 13:48:36,135 [wrapper] Pilot exit status: 0
2025-10-11 09:48:41 (40236): Guest Log: 2025-10-11 13:48:36,177 [wrapper] pandaids: 6838116734
2025-10-11 09:48:41 (40236): Guest Log: 2025-10-11 13:48:36,194 [wrapper] cleanup supervisor_pilot  7525 5950
2025-10-11 09:48:41 (40236): Guest Log: 2025-10-11 13:48:36,196 [wrapper] Test setup, not cleaning
2025-10-11 09:48:41 (40236): Guest Log: 2025-10-11 13:48:36,199 [wrapper] apfmon messages muted
2025-10-11 09:48:41 (40236): Guest Log: 2025-10-11 13:48:36,201 [wrapper] ==== wrapper stdout END ====
2025-10-11 09:48:41 (40236): Guest Log: 2025-10-11 13:48:36,204 [wrapper] ==== wrapper stderr END ====
2025-10-11 09:48:41 (40236): Guest Log:  *** Error codes and diagnostics ***
2025-10-11 09:48:41 (40236): Guest Log:     "exeErrorCode": 0,
2025-10-11 09:48:41 (40236): Guest Log:     "exeErrorDiag": "",
2025-10-11 09:48:41 (40236): Guest Log:     "pilotErrorCode": 0,
2025-10-11 09:48:41 (40236): Guest Log:     "pilotErrorDiag": "",
2025-10-11 09:48:41 (40236): Guest Log:  *** Listing of results directory ***
2025-10-11 09:48:41 (40236): Guest Log: total 195432
2025-10-11 09:48:41 (40236): Guest Log: -rw-r--r--. 1 atlas atlas    557409 Oct 11 04:32 pilot3.tar.gz
2025-10-11 09:48:41 (40236): Guest Log: -rwx------. 1 atlas atlas     36292 Oct 11 05:09 runpilot2-wrapper.sh
2025-10-11 09:48:41 (40236): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Oct 11 05:10 queuedata.json
2025-10-11 09:48:41 (40236): Guest Log: -rwxr-xr-x. 1 atlas atlas      9027 Oct 11 11:18 init_data.xml
2025-10-11 09:48:41 (40236): Guest Log: -rwxr-xr-x. 1 atlas atlas    569683 Oct 11 11:18 input.tar.gz
2025-10-11 09:48:41 (40236): Guest Log: -rwxr-xr-x. 1 atlas atlas     15120 Oct 11 11:18 start_atlas.sh
2025-10-11 09:48:41 (40236): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Oct 11 11:18 EVNT.46676267._002074.pool.root.1 -> /data/./ATLAS.root_0
2025-10-11 09:48:41 (40236): Guest Log: -rw-r--r--. 1 atlas atlas      2549 Oct 11 11:18 pandaJob.out
2025-10-11 09:48:41 (40236): Guest Log: -rw-------. 1 atlas atlas    975509 Oct 11 11:19 agis_schedconf.cvmfs.json
2025-10-11 09:48:41 (40236): Guest Log: -rw-------. 1 atlas atlas   1560580 Oct 11 11:19 agis_ddmendpoints.agis.ALL.json
2025-10-11 09:48:41 (40236): Guest Log: drwx------. 5 atlas atlas      4096 Oct 11 11:19 pilot3
2025-10-11 09:48:41 (40236): Guest Log: -rw-------. 1 atlas atlas 193193344 Oct 11 13:47 HITS.46676269._051611.pool.root.1
2025-10-11 09:48:41 (40236): Guest Log: -rw-------. 1 atlas atlas        95 Oct 11 13:47 pilot_heartbeat.json
2025-10-11 09:48:41 (40236): Guest Log: -rw-------. 1 atlas atlas      1024 Oct 11 13:47 memory_monitor_summary.json
2025-10-11 09:48:41 (40236): Guest Log: -rw-------. 1 atlas atlas    313286 Oct 11 13:47 log.46676269._051611.job.log.tgz.1
2025-10-11 09:48:41 (40236): Guest Log: -rw-------. 1 atlas atlas      7784 Oct 11 13:47 heartbeat.json
2025-10-11 09:48:41 (40236): Guest Log: -rw-------. 1 atlas atlas      4805 Oct 11 13:48 pilotlog.txt
2025-10-11 09:48:41 (40236): Guest Log: -rw-------. 1 atlas atlas   1232276 Oct 11 13:48 log.46676269._051611.job.log.1
2025-10-11 09:48:41 (40236): Guest Log: -rw-------. 1 atlas atlas       357 Oct 11 13:48 output.list
2025-10-11 09:48:41 (40236): Guest Log: -rw-r--r--. 1 atlas atlas       620 Oct 11 13:48 runtime_log
2025-10-11 09:48:41 (40236): Guest Log: -rw-------. 1 atlas atlas   1566720 Oct 11 13:48 result.tar.gz
2025-10-11 09:48:41 (40236): Guest Log: -rw-r--r--. 1 atlas atlas      8636 Oct 11 13:48 runtime_log.err
2025-10-11 09:48:41 (40236): Guest Log: -rw-------. 1 atlas atlas       652 Oct 11 13:48 hA0KDms2gR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmbSfNDmcKIYnn.diag
2025-10-11 09:48:41 (40236): Guest Log: Looking for outputfile HITS.46676269._051611.pool.root.1
2025-10-11 09:48:41 (40236): Guest Log: HITS file was successfully produced
2025-10-11 09:48:41 (40236): Guest Log: -rw-------. 1 atlas atlas 193193344 Oct 11 13:47 /home/atlas/RunAtlas/HITS.46676269._051611.pool.root.1
2025-10-11 09:48:41 (40236): Guest Log: Successfully finished the ATLAS job!
2025-10-11 09:48:41 (40236): Guest Log: Copying the results back to the shared directory!
2025-10-11 09:48:41 (40236): Guest Log:  *** Contents of shared directory: ***
2025-10-11 09:48:41 (40236): Guest Log: total 405832
2025-10-11 09:48:41 (40236): Guest Log: -rwxrwxrwx. 1 root root 220202347 Oct 11 11:17 ATLAS.root_0
2025-10-11 09:48:41 (40236): Guest Log: -rwxrwxrwx. 1 root root 193193344 Oct 11  2025 HITS.pool.root.1
2025-10-11 09:48:41 (40236): Guest Log: -rwxrwxrwx. 1 root root      9027 Oct 11 11:17 init_data.xml
2025-10-11 09:48:41 (40236): Guest Log: -rwxrwxrwx. 1 root root    569683 Oct 11 10:27 input.tar.gz
2025-10-11 09:48:41 (40236): Guest Log: -rwxrwxrwx. 1 root root   1566720 Oct 11  2025 result.tar.gz
2025-10-11 09:48:41 (40236): Guest Log: -rwxrwxrwx. 1 root root     15120 Oct 11 10:27 start_atlas.sh
2025-10-11 09:48:41 (40236): Guest Log:  *** Success! Shutting down the machine. ***
2025-10-11 09:48:41 (40236): VM Completion File Detected.
2025-10-11 09:48:41 (40236): Powering off VM.
2025-10-11 09:48:41 (40236): Successfully stopped VM.
2025-10-11 09:48:41 (40236): Deregistering VM. (boinc_1e1cd28f91d570ca, slot#0)
2025-10-11 09:48:41 (40236): Removing network bandwidth throttle group from VM.
2025-10-11 09:48:41 (40236): Removing VM from VirtualBox.
2025-10-11 09:48:47 (40236): called boinc_finish(0)

</stderr_txt>
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