Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
22:00:33 (2505014): wrapper (7.7.26015): starting
22:00:33 (2505014): wrapper: running run_atlas (--nthreads 3)
[2025-10-11 22:00:33] Arguments: --nthreads 3
[2025-10-11 22:00:33] Threads: 3
[2025-10-11 22:00:33] Checking for CVMFS
[2025-10-11 22:00:33] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 22:00:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 22:00:33] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 22:00:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 22:00:33] 2.9.2.0 1544458 3390 70928 151594 1 57 30578671 36864000 0 130560 0 2512473 99.991 111976 1175 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-11 22:00:33] CVMFS is ok
[2025-10-11 22:00:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 22:00:33] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 22:00:33] Further information can be found at the LHC@home message board.
[2025-10-11 22:00:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 22:00:33] Checking for apptainer binary...
[2025-10-11 22:00:33] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 22:00:33] Running /usr/bin/apptainer --version
[2025-10-11 22:00:33] apptainer version 1.4.1-1.1
[2025-10-11 22:00:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 22:00:34] atlasA223a
[2025-10-11 22:00:34] apptainer works
[2025-10-11 22:00:34] Set ATHENA_PROC_NUMBER=3
[2025-10-11 22:00:34] Set ATHENA_CORE_NUMBER=3
[2025-10-11 22:00:34] Starting ATLAS job with PandaID=6838200377
[2025-10-11 22:00:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-11 23:31:58]  *** The last 200 lines of the pilot log: ***
[2025-10-11 23:31:58] 2025-10-11 21:31:25,393 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-11 23:31:58] 2025-10-11 21:31:25,394 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-11 23:31:58] 2025-10-11 21:31:25,394 | INFO     | job 6838200377 has completed (purged errors)
[2025-10-11 23:31:58] 2025-10-11 21:31:25,394 | INFO     | overall cleanup function is called
[2025-10-11 23:31:58] 2025-10-11 21:31:26,403 | INFO     | --- collectZombieJob: --- 10, [2515203]
[2025-10-11 23:31:58] 2025-10-11 21:31:26,404 | INFO     | zombie collector waiting for pid 2515203
[2025-10-11 23:31:58] 2025-10-11 21:31:26,404 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-11 23:31:58] 2025-10-11 21:31:26,404 | INFO     | collected zombie processes
[2025-10-11 23:31:58] 2025-10-11 21:31:26,404 | INFO     | will attempt to kill all subprocesses of pid=2515203
[2025-10-11 23:31:58] 2025-10-11 21:31:26,444 | INFO     | process IDs to be killed: [2515203] (in reverse order)
[2025-10-11 23:31:58] 2025-10-11 21:31:26,469 | WARNING  | found no corresponding commands to process id(s)
[2025-10-11 23:31:58] 2025-10-11 21:31:26,469 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-11 23:31:58] 2025-10-11 21:31:26,470 | INFO     | did not find any defunct processes belonging to 2515203
[2025-10-11 23:31:58] 2025-10-11 21:31:26,471 | INFO     | did not find any defunct processes belonging to 2515203
[2025-10-11 23:31:58] 2025-10-11 21:31:26,471 | INFO     | ready for new job
[2025-10-11 23:31:58] 2025-10-11 21:31:26,471 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-11 23:31:58] 2025-10-11 21:31:26,472 | INFO     | ***************************************
[2025-10-11 23:31:58] 2025-10-11 21:31:26,472 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-11 23:31:58] 2025-10-11 21:31:26,472 | INFO     | ***************************************
[2025-10-11 23:31:58] 2025-10-11 21:31:26,472 | INFO     | 
[2025-10-11 23:31:58] 2025-10-11 21:31:26,472 | INFO     | architecture information:
[2025-10-11 23:31:58] 2025-10-11 21:31:26,472 | INFO     | executing command: cat /etc/os-release
[2025-10-11 23:31:58] 2025-10-11 21:31:26,482 | INFO     | cat /etc/os-release:
[2025-10-11 23:31:58] NAME="CentOS Linux"
[2025-10-11 23:31:58] VERSION="7 (Core)"
[2025-10-11 23:31:58] ID="centos"
[2025-10-11 23:31:58] ID_LIKE="rhel fedora"
[2025-10-11 23:31:58] VERSION_ID="7"
[2025-10-11 23:31:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-11 23:31:58] ANSI_COLOR="0;31"
[2025-10-11 23:31:58] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-11 23:31:58] HOME_URL="https://www.centos.org/"
[2025-10-11 23:31:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-11 23:31:58] 
[2025-10-11 23:31:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-11 23:31:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-11 23:31:58] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-11 23:31:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-11 23:31:58] 
[2025-10-11 23:31:58] 2025-10-11 21:31:26,482 | INFO     | ***************************************
[2025-10-11 23:31:58] 2025-10-11 21:31:26,986 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-11 23:31:58] 2025-10-11 21:31:26,999 | INFO     | sufficient remaining disk space (329438461952 B)
[2025-10-11 23:31:58] 2025-10-11 21:31:26,999 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-11 23:31:58] 2025-10-11 21:31:26,999 | INFO     | current server update state: UPDATING_FINAL
[2025-10-11 23:31:58] 2025-10-11 21:31:26,999 | INFO     | update_server=False
[2025-10-11 23:31:58] 2025-10-11 21:31:26,999 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-11 23:31:58] 2025-10-11 21:31:26,999 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-11 23:31:58] 2025-10-11 21:31:27,476 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-11 23:31:58] 2025-10-11 21:31:27,476 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-11 23:31:58] 2025-10-11 21:31:27,477 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-11 23:31:58] 2025-10-11 21:31:27,477 | INFO     | will abort loop
[2025-10-11 23:31:58] 2025-10-11 21:31:27,708 | INFO     | all data control threads have been joined
[2025-10-11 23:31:58] 2025-10-11 21:31:28,005 | INFO     | [job] retrieve thread has finished
[2025-10-11 23:31:58] 2025-10-11 21:31:28,006 | INFO     | [job] queue monitor thread has finished
[2025-10-11 23:31:58] 2025-10-11 21:31:28,044 | INFO     | [data] copytool_in thread has finished
[2025-10-11 23:31:58] 2025-10-11 21:31:28,166 | INFO     | all job control threads have been joined
[2025-10-11 23:31:58] 2025-10-11 21:31:28,483 | INFO     | [job] job monitor thread has finished
[2025-10-11 23:31:58] 2025-10-11 21:31:28,484 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-11 23:31:58] 2025-10-11 21:31:28,500 | INFO     | all payload control threads have been joined
[2025-10-11 23:31:58] 2025-10-11 21:31:28,714 | INFO     | [data] control thread has finished
[2025-10-11 23:31:58] 2025-10-11 21:31:29,053 | INFO     | [job] validate thread has finished
[2025-10-11 23:31:58] 2025-10-11 21:31:29,092 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-11 23:31:58] 2025-10-11 21:31:29,098 | INFO     | [payload] failed_post thread has finished
[2025-10-11 23:31:58] 2025-10-11 21:31:29,170 | INFO     | [job] control thread has finished
[2025-10-11 23:31:58] 2025-10-11 21:31:29,175 | INFO     | [job] create_data_payload thread has finished
[2025-10-11 23:31:58] 2025-10-11 21:31:29,461 | INFO     | [payload] validate_pre thread has finished
[2025-10-11 23:31:58] 2025-10-11 21:31:29,506 | INFO     | [payload] control thread has finished
[2025-10-11 23:31:58] 2025-10-11 21:31:29,507 | INFO     | [payload] execute_payloads thread has finished
[2025-10-11 23:31:58] 2025-10-11 21:31:29,600 | INFO     | [payload] validate_post thread has finished
[2025-10-11 23:31:58] 2025-10-11 21:31:30,490 | INFO     | [data] copytool_out thread has finished
[2025-10-11 23:31:58] 2025-10-11 21:31:33,099 | INFO     | [data] queue_monitor thread has finished
[2025-10-11 23:31:58] 2025-10-11 21:31:37,673 | INFO     | job.realtimelogging is not enabled
[2025-10-11 23:31:58] 2025-10-11 21:31:38,679 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-11 23:31:58] 2025-10-11 21:31:52,982 | INFO     | [monitor] cgroup control has ended
[2025-10-11 23:31:58] 2025-10-11 21:31:53,811 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139752220460864)>', '<ExcThread(monitor, started 139751415850752)>']
[2025-10-11 23:31:58] 2025-10-11 21:31:57,005 | INFO     | PID=2508754 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-11 23:31:58] 2025-10-11 21:31:57,005 | INFO     | found 0 job(s) in 20 queues
[2025-10-11 23:31:58] 2025-10-11 21:31:57,005 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-11 23:31:58] 2025-10-11 21:31:57,005 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-11 23:31:58] 2025-10-11 21:31:57,005 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-11 23:31:58] 2025-10-11 21:31:57,005 | INFO     | [monitor] control thread has ended
[2025-10-11 23:31:58] 2025-10-11 21:31:58,837 | INFO     | all workflow threads have been joined
[2025-10-11 23:31:58] 2025-10-11 21:31:58,838 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-11 23:31:58] 2025-10-11 21:31:58,838 | INFO     | traces error code: 0
[2025-10-11 23:31:58] 2025-10-11 21:31:58,839 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-11 23:31:58] 2025-10-11 21:31:58,887 [wrapper] ==== pilot stdout END ====
[2025-10-11 23:31:58] 2025-10-11 21:31:58,890 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-11 23:31:58] 2025-10-11 21:31:58,893 [wrapper] pilotpid: 2508754
[2025-10-11 23:31:58] 2025-10-11 21:31:58,896 [wrapper] Pilot exit status: 0
[2025-10-11 23:31:58] 2025-10-11 21:31:58,904 [wrapper] pandaids: 6838200377
[2025-10-11 23:31:58] 2025-10-11 21:31:58,921 [wrapper] cleanup supervisor_pilot 2527258 2508755
[2025-10-11 23:31:58] 2025-10-11 21:31:58,924 [wrapper] Test setup, not cleaning
[2025-10-11 23:31:58] 2025-10-11 21:31:58,927 [wrapper] apfmon messages muted
[2025-10-11 23:31:58] 2025-10-11 21:31:58,930 [wrapper] ==== wrapper stdout END ====
[2025-10-11 23:31:58] 2025-10-11 21:31:58,932 [wrapper] ==== wrapper stderr END ====
[2025-10-11 23:31:58]  *** Error codes and diagnostics ***
[2025-10-11 23:31:58]     "exeErrorCode": 0,
[2025-10-11 23:31:58]     "exeErrorDiag": "",
[2025-10-11 23:31:58]     "pilotErrorCode": 0,
[2025-10-11 23:31:58]     "pilotErrorDiag": "",
[2025-10-11 23:31:58]  *** Listing of results directory ***
[2025-10-11 23:31:58] total 409112
[2025-10-11 23:31:58] -rw-r--r-- 1 boinc boinc    557409 Oct 11 09:58 pilot3.tar.gz
[2025-10-11 23:31:58] -rwx------ 1 boinc boinc     36292 Oct 11 10:02 runpilot2-wrapper.sh
[2025-10-11 23:31:58] -rw-r--r-- 1 boinc boinc      5112 Oct 11 10:02 queuedata.json
[2025-10-11 23:31:58] -rw-r--r-- 1 boinc boinc       100 Oct 11 22:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-11 23:31:58] -rwxr-xr-x 1 boinc boinc      7986 Oct 11 22:00 run_atlas
[2025-10-11 23:31:58] -rw-r--r-- 1 boinc boinc       105 Oct 11 22:00 job.xml
[2025-10-11 23:31:58] -rw-r--r-- 2 boinc boinc 219543492 Oct 11 22:00 EVNT.46676267._002169.pool.root.1
[2025-10-11 23:31:58] drwxrwx--x 2 boinc boinc      4096 Oct 11 22:00 shared
[2025-10-11 23:31:58] -rw-r--r-- 2 boinc boinc    569680 Oct 11 22:00 input.tar.gz
[2025-10-11 23:31:58] -rw-r--r-- 2 boinc boinc     15120 Oct 11 22:00 start_atlas.sh
[2025-10-11 23:31:58] -rw-r--r-- 1 boinc boinc         0 Oct 11 22:00 boinc_setup_complete
[2025-10-11 23:31:58] -rw-r--r-- 1 boinc boinc      6200 Oct 11 22:00 init_data.xml
[2025-10-11 23:31:58] -rw-r--r-- 1 boinc boinc         0 Oct 11 22:00 boinc_lockfile
[2025-10-11 23:31:58] -rw-r--r-- 1 boinc boinc      2550 Oct 11 22:00 pandaJob.out
[2025-10-11 23:31:58] -rw------- 1 boinc boinc    975512 Oct 11 22:00 agis_schedconf.cvmfs.json
[2025-10-11 23:31:58] -rw------- 1 boinc boinc   1560580 Oct 11 22:00 agis_ddmendpoints.agis.ALL.json
[2025-10-11 23:31:58] drwx------ 5 boinc boinc      4096 Oct 11 22:00 pilot3
[2025-10-11 23:31:58] -rw------- 1 boinc boinc 193401076 Oct 11 23:30 HITS.46676269._054043.pool.root.1
[2025-10-11 23:31:58] -rw-r--r-- 1 boinc boinc       530 Oct 11 23:31 boinc_task_state.xml
[2025-10-11 23:31:58] -rw------- 1 boinc boinc      1019 Oct 11 23:31 memory_monitor_summary.json
[2025-10-11 23:31:58] -rw------- 1 boinc boinc        95 Oct 11 23:31 pilot_heartbeat.json
[2025-10-11 23:31:58] -rw------- 1 boinc boinc    251381 Oct 11 23:31 log.46676269._054043.job.log.tgz.1
[2025-10-11 23:31:58] -rw------- 1 boinc boinc      7766 Oct 11 23:31 heartbeat.json
[2025-10-11 23:31:58] -rw-r--r-- 1 boinc boinc      8192 Oct 11 23:31 boinc_mmap_file
[2025-10-11 23:31:58] -rw-r--r-- 1 boinc boinc        27 Oct 11 23:31 wrapper_checkpoint.txt
[2025-10-11 23:31:58] -rw------- 1 boinc boinc      5010 Oct 11 23:31 pilotlog.txt
[2025-10-11 23:31:58] -rw------- 1 boinc boinc    794179 Oct 11 23:31 log.46676269._054043.job.log.1
[2025-10-11 23:31:58] -rw------- 1 boinc boinc       357 Oct 11 23:31 output.list
[2025-10-11 23:31:58] -rw-r--r-- 1 boinc boinc       620 Oct 11 23:31 runtime_log
[2025-10-11 23:31:58] -rw------- 1 boinc boinc   1064960 Oct 11 23:31 result.tar.gz
[2025-10-11 23:31:58] -rw-r--r-- 1 boinc boinc      8797 Oct 11 23:31 runtime_log.err
[2025-10-11 23:31:58] -rw------- 1 boinc boinc       662 Oct 11 23:31 e7kNDmHkjR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmUqfNDmA1AUhn.diag
[2025-10-11 23:31:58] -rw-r--r-- 1 boinc boinc     11344 Oct 11 23:31 stderr.txt
[2025-10-11 23:31:58] HITS file was successfully produced:
[2025-10-11 23:31:58] -rw------- 1 boinc boinc 193401076 Oct 11 23:30 shared/HITS.pool.root.1
[2025-10-11 23:31:58]  *** Contents of shared directory: ***
[2025-10-11 23:31:58] total 404896
[2025-10-11 23:31:58] -rw-r--r-- 2 boinc boinc 219543492 Oct 11 22:00 ATLAS.root_0
[2025-10-11 23:31:58] -rw-r--r-- 2 boinc boinc    569680 Oct 11 22:00 input.tar.gz
[2025-10-11 23:31:58] -rw-r--r-- 2 boinc boinc     15120 Oct 11 22:00 start_atlas.sh
[2025-10-11 23:31:58] -rw------- 1 boinc boinc 193401076 Oct 11 23:30 HITS.pool.root.1
[2025-10-11 23:31:58] -rw------- 1 boinc boinc   1064960 Oct 11 23:31 result.tar.gz
23:32:00 (2505014): run_atlas exited; CPU time 15544.839018
23:32:00 (2505014): called boinc_finish(0)

</stderr_txt>
]]>

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