Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-10-11 21:23:55 (27032): vboxwrapper version 26210
2025-10-11 21:23:55 (27032): BOINC client version: 8.0.2
2025-10-11 21:23:55 (27032): Detected: VirtualBox VboxManage Interface (Version: 6.1.34)
2025-10-11 21:23:56 (27032): Successfully copied 'init_data.xml' to the shared directory.
2025-10-11 21:23:56 (27032): Create VM. (boinc_77c2cf0796fd387b, slot#1)
2025-10-11 21:23:57 (27032): Setting Memory Size for VM. (4400MB)
2025-10-11 21:23:57 (27032): Setting CPU Count for VM. (4)
2025-10-11 21:23:57 (27032): Setting Chipset Options for VM.
2025-10-11 21:23:57 (27032): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-10-11 21:23:58 (27032): Setting Boot Options for VM.
2025-10-11 21:23:58 (27032): Setting Network Configuration for NAT. (Driver: virtio)
2025-10-11 21:23:59 (27032): Enabling VM Network Access.
2025-10-11 21:23:59 (27032): Disabling USB Support for VM.
2025-10-11 21:23:59 (27032): Disabling COM Port Support for VM.
2025-10-11 21:23:59 (27032): Disabling LPT Port Support for VM.
2025-10-11 21:24:00 (27032): Disabling Audio Support for VM.
2025-10-11 21:24:00 (27032): Disabling Clipboard Support for VM.
2025-10-11 21:24:00 (27032): Disabling Drag and Drop Support for VM.
2025-10-11 21:24:00 (27032): Adding storage controller(s) to VM.
2025-10-11 21:24:01 (27032): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-10-11 21:24:01 (27032): Adding VirtualBox Guest Additions to VM.
2025-10-11 21:24:01 (27032): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-10-11 21:24:02 (27032): forwarding host port 58908 to guest port 80
2025-10-11 21:24:02 (27032): Enabling remote desktop for VM.
2025-10-11 21:24:02 (27032): Required extension pack not installed, remote desktop not enabled.
2025-10-11 21:24:02 (27032): Enabling shared directory for VM.
2025-10-11 21:24:03 (27032): Starting VM using VBoxManage interface. (boinc_77c2cf0796fd387b, slot#1)
2025-10-11 21:24:08 (27032): Successfully started VM. (PID = '6868')
2025-10-11 21:24:08 (27032): Reporting VM Process ID to BOINC.
2025-10-11 21:24:08 (27032): Guest Log: BIOS: VirtualBox 6.1.34
2025-10-11 21:24:08 (27032): Guest Log: CPUID EDX: 0x178bfbff
2025-10-11 21:24:08 (27032): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-10-11 21:24:08 (27032): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-10-11 21:24:08 (27032): VM state change detected. (old = 'poweredoff', new = 'running')
2025-10-11 21:24:08 (27032): Detected: Web Application Enabled (http://localhost:58908)
2025-10-11 21:24:08 (27032): Preference change detected
2025-10-11 21:24:08 (27032): Setting CPU throttle for VM. (50%)
2025-10-11 21:24:09 (27032): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 180 seconds) or (Vbox_job.xml: 900 seconds))
2025-10-11 21:24:10 (27032): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-10-11 21:24:10 (27032): Guest Log: BIOS: Booting from Hard Disk...
2025-10-11 21:24:15 (27032): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-10-11 21:24:15 (27032): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-10-11 21:24:15 (27032): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-10-11 21:24:15 (27032): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-10-11 21:24:15 (27032): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-10-11 21:24:15 (27032): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-10-11 21:24:15 (27032): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-10-11 21:24:15 (27032): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-10-11 21:24:15 (27032): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-10-11 21:24:15 (27032): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-10-11 21:24:15 (27032): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-10-11 21:24:15 (27032): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-10-11 21:24:15 (27032): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-10-11 21:24:15 (27032): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-10-11 21:24:15 (27032): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-10-11 21:24:15 (27032): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-10-11 21:24:15 (27032): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-10-11 21:24:15 (27032): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-10-11 21:24:15 (27032): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-10-11 21:24:15 (27032): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-10-11 21:24:15 (27032): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-10-11 21:24:15 (27032): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-10-11 21:24:15 (27032): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-10-11 21:24:15 (27032): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-10-11 21:24:15 (27032): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-10-11 21:24:15 (27032): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-10-11 21:24:15 (27032): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-10-11 21:24:15 (27032): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-10-11 21:24:15 (27032): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-10-11 21:24:15 (27032): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-10-11 21:24:15 (27032): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-10-11 21:24:15 (27032): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-10-11 21:24:27 (27032): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-10-11 21:24:27 (27032): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0000000 (size 0x400000)
2025-10-11 21:24:41 (27032): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-10-11 21:24:41 (27032): Guest Log: 00:00:00.000507 main     Log opened 2025-10-11T21:24:39.782810000Z
2025-10-11 21:24:41 (27032): Guest Log: 00:00:00.000891 main     OS Product: Linux
2025-10-11 21:24:41 (27032): Guest Log: 00:00:00.001030 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-10-11 21:24:41 (27032): Guest Log: 00:00:00.001139 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-10-11 21:24:41 (27032): Guest Log: 00:00:00.001253 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-10-11 21:24:41 (27032): Guest Log: 00:00:00.001257 main     Process ID: 1305
2025-10-11 21:24:41 (27032): Guest Log: 00:00:00.001259 main     Package type: LINUX_64BITS_GENERIC
2025-10-11 21:24:41 (27032): Guest Log: 00:00:00.005149 main     5.2.32 r132073 started. Verbose level = 0
2025-10-11 21:24:42 (27032): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-10-11 21:24:42 (27032): Guest Log: [INFO] Mounting shared directory
2025-10-11 21:24:42 (27032): Guest Log: [INFO] Checking for init_data.xml
2025-10-11 21:24:45 (27032): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-10-11 21:24:45 (27032): Guest Log: [INFO] Detected branch: prod
2025-10-11 21:24:46 (27032): Guest Log: This is the prod version of the ATLAS job wrapper
2025-10-11 21:24:46 (27032): Guest Log: Copying input files
2025-10-11 21:24:48 (27032): Guest Log: Copied input files into RunAtlas.
2025-10-11 21:24:48 (27032): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-10-11 21:24:48 (27032): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-10-11 21:24:48 (27032): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-10-11 21:24:48 (27032): Guest Log: Further information can be found at the LHC@home message board.
2025-10-11 21:24:51 (27032): Guest Log: 00:00:10.020308 timesync vgsvcTimeSyncWorker: Radical guest time change: 14 411 764 537 000ns (GuestNow=1 760 232 291 563 061 000 ns GuestLast=1 760 217 879 798 524 000 ns fSetTimeLastLoop=true )
2025-10-11 21:25:21 (27032): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-10-11 21:25:21 (27032): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-10-11 21:25:21 (27032): Guest Log: 2.6.3.0 1584 0 32144 151602 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-10-11 21:25:25 (27032): Guest Log: copied the webapp to /var/www
2025-10-11 21:25:25 (27032): Guest Log: ATHENA_PROC_NUMBER=4
2025-10-11 21:25:25 (27032): Guest Log: ATHENA_CORE_NUMBER=4
2025-10-11 21:25:25 (27032): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-10-11 21:25:25 (27032): Guest Log:  *** Starting ATLAS job. (PandaID=6838116671 taskID=46676269) ***
2025-10-11 21:26:36 (27032): VM state change detected. (old = 'running', new = 'paused')
2025-10-11 21:26:56 (27032): VM state change detected. (old = 'paused', new = 'running')
2025-10-11 21:33:17 (27032): VM state change detected. (old = 'running', new = 'paused')
2025-10-11 21:33:18 (27032): VM state change detected. (old = 'paused', new = 'running')
2025-10-11 23:04:38 (27032): Status Report: Elapsed Time: '6000.264624'
2025-10-11 23:04:38 (27032): Status Report: CPU Time: '13434.687500'
2025-10-12 00:02:41 (27032): Guest Log:  *** Job finished ***
2025-10-12 00:02:41 (27032): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-10-12 00:02:41 (27032): Guest Log: 2025-10-12 04:02:12,920 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-10-12 00:02:41 (27032): Guest Log: 2025-10-12 04:02:12,920 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-10-12 00:02:41 (27032): Guest Log: 2025-10-12 04:02:14,358 | INFO     | [monitor] cgroup control has ended
2025-10-12 00:02:41 (27032): Guest Log: 2025-10-12 04:02:15,360 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140136083658560)>', '<ExcThread(monitor, started 140135496664832)>']
2025-10-12 00:02:41 (27032): Guest Log: 2025-10-12 04:02:15,966 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-10-12 00:02:41 (27032): Guest Log: 2025-10-12 04:02:15,967 | INFO     | [monitor] control thread has ended
2025-10-12 00:02:41 (27032): Guest Log: 2025-10-12 04:02:20,367 | INFO     | all workflow threads have been joined
2025-10-12 00:02:41 (27032): Guest Log: 2025-10-12 04:02:20,367 | INFO     | end of generic workflow (traces error code: 0)
2025-10-12 00:02:41 (27032): Guest Log: 2025-10-12 04:02:20,368 | INFO     | traces error code: 0
2025-10-12 00:02:41 (27032): Guest Log: 2025-10-12 04:02:20,369 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-10-12 00:02:41 (27032): Guest Log: 2025-10-12 04:02:20,638 [wrapper] ==== pilot stdout END ====
2025-10-12 00:02:41 (27032): Guest Log: 2025-10-12 04:02:20,642 [wrapper] ==== wrapper stdout RESUME ====
2025-10-12 00:02:41 (27032): Guest Log: 2025-10-12 04:02:20,645 [wrapper] pilotpid: 5977
2025-10-12 00:02:41 (27032): Guest Log: 2025-10-12 04:02:20,648 [wrapper] Pilot exit status: 0
2025-10-12 00:02:41 (27032): Guest Log: 2025-10-12 04:02:20,722 [wrapper] pandaids: 6838116671
2025-10-12 00:02:41 (27032): Guest Log: 2025-10-12 04:02:20,759 [wrapper] cleanup supervisor_pilot  5497 5978
2025-10-12 00:02:41 (27032): Guest Log: 2025-10-12 04:02:20,762 [wrapper] Test setup, not cleaning
2025-10-12 00:02:41 (27032): Guest Log: 2025-10-12 04:02:20,766 [wrapper] apfmon messages muted
2025-10-12 00:02:41 (27032): Guest Log: 2025-10-12 04:02:20,770 [wrapper] ==== wrapper stdout END ====
2025-10-12 00:02:41 (27032): Guest Log: 2025-10-12 04:02:20,773 [wrapper] ==== wrapper stderr END ====
2025-10-12 00:02:41 (27032): Guest Log:  *** Error codes and diagnostics ***
2025-10-12 00:02:41 (27032): Guest Log:     "exeErrorCode": 0,
2025-10-12 00:02:41 (27032): Guest Log:     "exeErrorDiag": "",
2025-10-12 00:02:41 (27032): Guest Log:     "pilotErrorCode": 0,
2025-10-12 00:02:41 (27032): Guest Log:     "pilotErrorDiag": "",
2025-10-12 00:02:41 (27032): Guest Log:  *** Listing of results directory ***
2025-10-12 00:02:41 (27032): Guest Log: total 194448
2025-10-12 00:02:41 (27032): Guest Log: -rw-r--r--. 1 atlas atlas    557409 Oct 11 04:32 pilot3.tar.gz
2025-10-12 00:02:41 (27032): Guest Log: -rwx------. 1 atlas atlas     36292 Oct 11 05:01 runpilot2-wrapper.sh
2025-10-12 00:02:41 (27032): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Oct 11 05:01 queuedata.json
2025-10-12 00:02:41 (27032): Guest Log: -rwxr-xr-x. 1 atlas atlas      6193 Oct 12 01:24 init_data.xml
2025-10-12 00:02:41 (27032): Guest Log: -rwxr-xr-x. 1 atlas atlas    569676 Oct 12 01:24 input.tar.gz
2025-10-12 00:02:41 (27032): Guest Log: -rwxr-xr-x. 1 atlas atlas     15120 Oct 12 01:24 start_atlas.sh
2025-10-12 00:02:41 (27032): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Oct 12 01:24 EVNT.46676267._002072.pool.root.1 -> /data/./ATLAS.root_0
2025-10-12 00:02:41 (27032): Guest Log: -rw-r--r--. 1 atlas atlas      2550 Oct 12 01:25 pandaJob.out
2025-10-12 00:02:41 (27032): Guest Log: -rw-------. 1 atlas atlas    975496 Oct 12 01:25 agis_schedconf.cvmfs.json
2025-10-12 00:02:41 (27032): Guest Log: -rw-------. 1 atlas atlas   1560580 Oct 12 01:26 agis_ddmendpoints.agis.ALL.json
2025-10-12 00:02:41 (27032): Guest Log: drwx------. 5 atlas atlas      4096 Oct 12 01:26 pilot3
2025-10-12 00:02:41 (27032): Guest Log: -rw-------. 1 atlas atlas 192392669 Oct 12 04:00 HITS.46676269._051548.pool.root.1
2025-10-12 00:02:41 (27032): Guest Log: -rw-------. 1 atlas atlas      1030 Oct 12 04:01 memory_monitor_summary.json
2025-10-12 00:02:41 (27032): Guest Log: -rw-------. 1 atlas atlas    310346 Oct 12 04:01 log.46676269._051548.job.log.tgz.1
2025-10-12 00:02:41 (27032): Guest Log: -rw-------. 1 atlas atlas      7815 Oct 12 04:01 heartbeat.json
2025-10-12 00:02:41 (27032): Guest Log: -rw-------. 1 atlas atlas        95 Oct 12 04:02 pilot_heartbeat.json
2025-10-12 00:02:41 (27032): Guest Log: -rw-------. 1 atlas atlas      4805 Oct 12 04:02 pilotlog.txt
2025-10-12 00:02:41 (27032): Guest Log: -rw-------. 1 atlas atlas   1137016 Oct 12 04:02 log.46676269._051548.job.log.1
2025-10-12 00:02:41 (27032): Guest Log: -rw-------. 1 atlas atlas       357 Oct 12 04:02 output.list
2025-10-12 00:02:41 (27032): Guest Log: -rw-r--r--. 1 atlas atlas       620 Oct 12 04:02 runtime_log
2025-10-12 00:02:41 (27032): Guest Log: -rw-------. 1 atlas atlas   1464320 Oct 12 04:02 result.tar.gz
2025-10-12 00:02:41 (27032): Guest Log: -rw-------. 1 atlas atlas       666 Oct 12 04:02 Sk4LDmtugR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmgRfNDmgH4zcn.diag
2025-10-12 00:02:41 (27032): Guest Log: -rw-r--r--. 1 atlas atlas      8675 Oct 12 04:02 runtime_log.err
2025-10-12 00:02:41 (27032): Guest Log: Looking for outputfile HITS.46676269._051548.pool.root.1
2025-10-12 00:02:41 (27032): Guest Log: HITS file was successfully produced
2025-10-12 00:02:41 (27032): Guest Log: -rw-------. 1 atlas atlas 192392669 Oct 12 04:00 /home/atlas/RunAtlas/HITS.46676269._051548.pool.root.1
2025-10-12 00:02:44 (27032): Guest Log: Successfully finished the ATLAS job!
2025-10-12 00:02:44 (27032): Guest Log: Copying the results back to the shared directory!
2025-10-12 00:02:44 (27032): Guest Log:  *** Contents of shared directory: ***
2025-10-12 00:02:45 (27032): Guest Log: total 405280
2025-10-12 00:02:45 (27032): Guest Log: -rwxrwxrwx. 1 root root 220545412 Oct 12 01:23 ATLAS.root_0
2025-10-12 00:02:45 (27032): Guest Log: -rwxrwxrwx. 1 root root 192392669 Oct 12  2025 HITS.pool.root.1
2025-10-12 00:02:45 (27032): Guest Log: -rwxrwxrwx. 1 root root      6193 Oct 12 01:23 init_data.xml
2025-10-12 00:02:45 (27032): Guest Log: -rwxrwxrwx. 1 root root    569676 Oct 11 10:51 input.tar.gz
2025-10-12 00:02:45 (27032): Guest Log: -rwxrwxrwx. 1 root root   1464320 Oct 12  2025 result.tar.gz
2025-10-12 00:02:45 (27032): Guest Log: -rwxrwxrwx. 1 root root     15120 Oct 11 10:51 start_atlas.sh
2025-10-12 00:02:45 (27032): Guest Log:  *** Success! Shutting down the machine. ***
2025-10-12 00:02:45 (27032): VM Completion File Detected.
2025-10-12 00:02:45 (27032): Powering off VM.
2025-10-12 00:02:48 (27032): Successfully stopped VM.
2025-10-12 00:02:48 (27032): Deregistering VM. (boinc_77c2cf0796fd387b, slot#1)
2025-10-12 00:02:49 (27032): Removing network bandwidth throttle group from VM.
2025-10-12 00:02:49 (27032): Removing VM from VirtualBox.
2025-10-12 00:02:55 (27032): called boinc_finish(0)

</stderr_txt>
]]>

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