Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
05:51:07 (13347): wrapper (7.7.26015): starting
05:51:07 (13347): wrapper: running run_atlas (--nthreads 12)
[2025-10-11 05:51:07] Arguments: --nthreads 12
[2025-10-11 05:51:07] Threads: 12
[2025-10-11 05:51:07] Checking for CVMFS
[2025-10-11 05:51:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 05:51:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 05:51:07] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 05:51:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 05:51:07] 2.11.2.0 2914 221285 98844 151579 2 57 14021910 20275200 1 130560 1 106798572 99.983 13200747 12310 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-11 05:51:07] CVMFS is ok
[2025-10-11 05:51:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 05:51:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 05:51:07] Further information can be found at the LHC@home message board.
[2025-10-11 05:51:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 05:51:07] Checking for apptainer binary...
[2025-10-11 05:51:07] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 05:51:07] Running /usr/bin/apptainer --version
[2025-10-11 05:51:07] apptainer version 1.3.2-1.el7
[2025-10-11 05:51:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 05:51:09] c-205-5.aglt2.org
[2025-10-11 05:51:09] apptainer works
[2025-10-11 05:51:09] Set ATHENA_PROC_NUMBER=12
[2025-10-11 05:51:09] Set ATHENA_CORE_NUMBER=12
[2025-10-11 05:51:09] Starting ATLAS job with PandaID=6837875677
[2025-10-11 05:51:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-11 07:05:53]  *** The last 200 lines of the pilot log: ***
[2025-10-11 07:05:53] 2025-10-11 11:05:13,641 | INFO     | summary of transferred files:
[2025-10-11 07:05:53] 2025-10-11 11:05:13,641 | INFO     |  -- lfn=log.46676269._047631.job.log.tgz.1, status_code=0, status=transferred
[2025-10-11 07:05:53] 2025-10-11 11:05:13,641 | INFO     | stage-out finished correctly
[2025-10-11 07:05:53] 2025-10-11 11:05:13,805 | WARNING  | process 23438 can no longer be monitored (due to stat problems) - aborting
[2025-10-11 07:05:53] 2025-10-11 11:05:13,806 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6837875677/memory_monitor_summary.json (trf name=prmon)
[2025-10-11 07:05:53] 2025-10-11 11:05:13,806 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6837875677/memory_monitor_summary.json (trf name=prmon)
[2025-10-11 07:05:53] 2025-10-11 11:05:13,807 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2025-10-11 07:05:53] 2025-10-11 11:05:13,807 | WARNING  | maxPSS not found in memory monitor output
[2025-10-11 07:05:53] 2025-10-11 11:05:13,808 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 4479694 B
[2025-10-11 07:05:53] 2025-10-11 11:05:13,808 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15781 B
[2025-10-11 07:05:53] 2025-10-11 11:05:13,808 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-11 07:05:53] 2025-10-11 11:05:13,825 | INFO     | sufficient remaining disk space (29358030848 B)
[2025-10-11 07:05:53] 2025-10-11 11:05:13,826 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-10-11 07:05:53] 2025-10-11 11:05:13,826 | INFO     | size of work directory /tmp/boinchome/slots/0/PanDA_Pilot-6837875677: 4777822 B (within 2537553920 B limit)
[2025-10-11 07:05:53] 2025-10-11 11:05:13,827 | INFO     | pfn file=/tmp/boinchome/slots/0/PanDA_Pilot-6837875677/HITS.46676269._047631.pool.root.1 does not exist (skip from workdir size calculation)
[2025-10-11 07:05:53] 2025-10-11 11:05:13,827 | INFO     | total size of present files: 0 B (workdir size: 4777822 B)
[2025-10-11 07:05:53] 2025-10-11 11:05:13,827 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/0/PanDA_Pilot-6837875677/HITS.46676269._047631.pool.root.1 since it does not exist
[2025-10-11 07:05:53] 2025-10-11 11:05:13,876 | INFO     | time since job start (4429s) is within the limit (172800.0s)
[2025-10-11 07:05:53] 2025-10-11 11:05:13,920 | INFO     | number of running child processes to parent process 23438: 1
[2025-10-11 07:05:53] 2025-10-11 11:05:13,920 | INFO     | maximum number of monitored processes: 6
[2025-10-11 07:05:53] 2025-10-11 11:05:15,287 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-11 07:05:53] 2025-10-11 11:05:15,372 | INFO     | job 6837875677 has state=finished
[2025-10-11 07:05:53] 2025-10-11 11:05:15,372 | INFO     | preparing for final server update for job 6837875677 in state='finished'
[2025-10-11 07:05:53] 2025-10-11 11:05:15,372 | INFO     | this job has now completed (state=finished)
[2025-10-11 07:05:53] 2025-10-11 11:05:15,373 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-11 07:05:53] 2025-10-11 11:05:15,373 | INFO     | log transfer has been attempted: DONE
[2025-10-11 07:05:53] 2025-10-11 11:05:15,373 | INFO     | job 6837875677 has finished - writing final server update
[2025-10-11 07:05:53] 2025-10-11 11:05:15,373 | INFO     | total number of processed events: 400 (read)
[2025-10-11 07:05:53] 2025-10-11 11:05:15,374 | INFO     | executing command: lscpu
[2025-10-11 07:05:53] 2025-10-11 11:05:15,401 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-11 07:05:53] 2025-10-11 11:05:15,882 | INFO     | time since job start (4431s) is within the limit (172800.0s)
[2025-10-11 07:05:53] 2025-10-11 11:05:16,423 | INFO     | monitor loop #331: job 0:6837875677 is in state 'finished'
[2025-10-11 07:05:53] 2025-10-11 11:05:16,423 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 07:05:53] 2025-10-11 11:05:17,887 | INFO     | time since job start (4433s) is within the limit (172800.0s)
[2025-10-11 07:05:53] 2025-10-11 11:05:18,925 | INFO     | monitor loop #332: job 0:6837875677 is in state 'finished'
[2025-10-11 07:05:53] 2025-10-11 11:05:18,925 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 07:05:53] 2025-10-11 11:05:19,892 | INFO     | time since job start (4435s) is within the limit (172800.0s)
[2025-10-11 07:05:53] 2025-10-11 11:05:20,269 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-11 07:05:53] 2025-10-11 11:05:20,273 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1695.8333333333333
[2025-10-11 07:05:53] 2025-10-11 11:05:20,276 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6837875677/memory_monitor_summary.json (trf name=prmon)
[2025-10-11 07:05:53] 2025-10-11 11:05:20,277 | INFO     | extracted standard info from prmon json
[2025-10-11 07:05:53] 2025-10-11 11:05:20,277 | INFO     | extracted standard memory fields from prmon json
[2025-10-11 07:05:53] 2025-10-11 11:05:20,277 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-11 07:05:53] 2025-10-11 11:05:20,277 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-11 07:05:53] 2025-10-11 11:05:20,278 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-11 07:05:53] 2025-10-11 11:05:20,279 | INFO     | fitting pss+swap vs Time
[2025-10-11 07:05:53] 2025-10-11 11:05:20,280 | INFO     | sum of square deviations: 89127252.5
[2025-10-11 07:05:53] 2025-10-11 11:05:20,280 | INFO     | sum of deviations: -2733925206.0
[2025-10-11 07:05:53] 2025-10-11 11:05:20,280 | INFO     | mean x: 1760178600.5
[2025-10-11 07:05:53] 2025-10-11 11:05:20,280 | INFO     | mean y: 2705784.0303030303
[2025-10-11 07:05:53] 2025-10-11 11:05:20,280 | INFO     | -- intersect: 53995132432.30777
[2025-10-11 07:05:53] 2025-10-11 11:05:20,280 | INFO     | intersect: 53995132432.30777
[2025-10-11 07:05:53] 2025-10-11 11:05:20,281 | INFO     | chi2: 0.04903909465638754
[2025-10-11 07:05:53] 2025-10-11 11:05:20,281 | INFO     | -- intersect: 53995132432.30777
[2025-10-11 07:05:53] 2025-10-11 11:05:20,281 | INFO     | current memory leak: -30.67 B/s (using 66 data points, chi2=0.05)
[2025-10-11 07:05:53] 2025-10-11 11:05:20,281 | INFO     | could have reported an average CPU frequency of 2036 MHz (6 samples)
[2025-10-11 07:05:53] 2025-10-11 11:05:20,281 | INFO     | ..............................
[2025-10-11 07:05:53] 2025-10-11 11:05:20,281 | INFO     | . Timing measurements:
[2025-10-11 07:05:53] 2025-10-11 11:05:20,281 | INFO     | . get job = 0 s
[2025-10-11 07:05:53] 2025-10-11 11:05:20,282 | INFO     | . initial setup = 2 s
[2025-10-11 07:05:53] 2025-10-11 11:05:20,282 | INFO     | . payload setup = 7 s
[2025-10-11 07:05:53] 2025-10-11 11:05:20,282 | INFO     | . stage-in = 0 s
[2025-10-11 07:05:53] 2025-10-11 11:05:20,282 | INFO     | . payload execution = 4401 s
[2025-10-11 07:05:53] 2025-10-11 11:05:20,282 | INFO     | . stage-out = 0 s
[2025-10-11 07:05:53] 2025-10-11 11:05:20,282 | INFO     | . log creation = 0 s
[2025-10-11 07:05:53] 2025-10-11 11:05:20,282 | INFO     | ..............................
[2025-10-11 07:05:53] 2025-10-11 11:05:20,367 | INFO     | 
[2025-10-11 07:05:53] 2025-10-11 11:05:20,367 | INFO     | job summary report
[2025-10-11 07:05:53] 2025-10-11 11:05:20,367 | INFO     | --------------------------------------------------
[2025-10-11 07:05:53] 2025-10-11 11:05:20,367 | INFO     | PanDA job id: 6837875677
[2025-10-11 07:05:53] 2025-10-11 11:05:20,367 | INFO     | task id: 46676269
[2025-10-11 07:05:53] 2025-10-11 11:05:20,368 | INFO     | errors: (none)
[2025-10-11 07:05:53] 2025-10-11 11:05:20,368 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-11 07:05:53] 2025-10-11 11:05:20,368 | INFO     | pilot state: finished 
[2025-10-11 07:05:53] 2025-10-11 11:05:20,368 | INFO     | transexitcode: 0
[2025-10-11 07:05:53] 2025-10-11 11:05:20,368 | INFO     | exeerrorcode: 0
[2025-10-11 07:05:53] 2025-10-11 11:05:20,368 | INFO     | exeerrordiag: 
[2025-10-11 07:05:53] 2025-10-11 11:05:20,368 | INFO     | exitcode: 0
[2025-10-11 07:05:53] 2025-10-11 11:05:20,368 | INFO     | exitmsg: OK
[2025-10-11 07:05:53] 2025-10-11 11:05:20,368 | INFO     | cpuconsumptiontime: 47210 s
[2025-10-11 07:05:53] 2025-10-11 11:05:20,368 | INFO     | nevents: 400
[2025-10-11 07:05:53] 2025-10-11 11:05:20,369 | INFO     | neventsw: 0
[2025-10-11 07:05:53] 2025-10-11 11:05:20,369 | INFO     | pid: 23438
[2025-10-11 07:05:53] 2025-10-11 11:05:20,369 | INFO     | pgrp: 23438
[2025-10-11 07:05:53] 2025-10-11 11:05:20,369 | INFO     | corecount: 12
[2025-10-11 07:05:53] 2025-10-11 11:05:20,369 | INFO     | event service: False
[2025-10-11 07:05:53] 2025-10-11 11:05:20,369 | INFO     | sizes: {0: 2348857, 5: 2349119, 11: 2349175, 4412: 2375251, 4413: 2384249, 4414: 2384333, 4419: 2384655}
[2025-10-11 07:05:53] 2025-10-11 11:05:20,369 | INFO     | --------------------------------------------------
[2025-10-11 07:05:53] 2025-10-11 11:05:20,369 | INFO     | 
[2025-10-11 07:05:53] 2025-10-11 11:05:20,369 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-11 07:05:53] 2025-10-11 11:05:20,393 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-11 07:05:53] 2025-10-11 11:05:20,393 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-11 07:05:53] 2025-10-11 11:05:20,393 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-11 07:05:53] 2025-10-11 11:05:20,393 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-11 07:05:53] 2025-10-11 11:05:20,394 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-11 07:05:53] 2025-10-11 11:05:20,394 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-11 07:05:53] 2025-10-11 11:05:20,394 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-11 07:05:53] 2025-10-11 11:05:20,394 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-11 07:05:53] 2025-10-11 11:05:20,394 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-11 07:05:53] 2025-10-11 11:05:20,394 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-11 07:05:53] 2025-10-11 11:05:20,395 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-11 07:05:53] 2025-10-11 11:05:20,395 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-11 07:05:53] 2025-10-11 11:05:20,395 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-11 07:05:53] 2025-10-11 11:05:20,395 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-11 07:05:53] 2025-10-11 11:05:20,395 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-11 07:05:53] 2025-10-11 11:05:20,395 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-11 07:05:53] 2025-10-11 11:05:20,396 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-11 07:05:53] 2025-10-11 11:05:20,396 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-11 07:05:53] 2025-10-11 11:05:20,396 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-11 07:05:53] 2025-10-11 11:05:20,396 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-11 07:05:53] 2025-10-11 11:05:20,396 | INFO     | job 6837875677 has completed (purged errors)
[2025-10-11 07:05:53] 2025-10-11 11:05:20,397 | INFO     | overall cleanup function is called
[2025-10-11 07:05:53] 2025-10-11 11:05:21,405 | INFO     | --- collectZombieJob: --- 10, [23438]
[2025-10-11 07:05:53] 2025-10-11 11:05:21,405 | INFO     | zombie collector waiting for pid 23438
[2025-10-11 07:05:53] 2025-10-11 11:05:21,405 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-11 07:05:53] 2025-10-11 11:05:21,405 | INFO     | collected zombie processes
[2025-10-11 07:05:53] 2025-10-11 11:05:21,405 | INFO     | will attempt to kill all subprocesses of pid=23438
[2025-10-11 07:05:53] 2025-10-11 11:05:21,494 | INFO     | process IDs to be killed: [23438] (in reverse order)
[2025-10-11 07:05:53] 2025-10-11 11:05:21,546 | WARNING  | found no corresponding commands to process id(s)
[2025-10-11 07:05:53] 2025-10-11 11:05:21,547 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-11 07:05:53] 2025-10-11 11:05:21,550 | INFO     | did not find any defunct processes belonging to 23438
[2025-10-11 07:05:53] 2025-10-11 11:05:21,552 | INFO     | did not find any defunct processes belonging to 23438
[2025-10-11 07:05:53] 2025-10-11 11:05:21,552 | INFO     | ready for new job
[2025-10-11 07:05:53] 2025-10-11 11:05:21,552 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-11 07:05:53] 2025-10-11 11:05:21,553 | INFO     | ***************************************
[2025-10-11 07:05:53] 2025-10-11 11:05:21,553 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-11 07:05:53] 2025-10-11 11:05:21,553 | INFO     | ***************************************
[2025-10-11 07:05:53] 2025-10-11 11:05:21,554 | INFO     | 
[2025-10-11 07:05:53] 2025-10-11 11:05:21,554 | INFO     | architecture information:
[2025-10-11 07:05:53] 2025-10-11 11:05:21,555 | INFO     | executing command: cat /etc/os-release
[2025-10-11 07:05:53] 2025-10-11 11:05:21,571 | INFO     | cat /etc/os-release:
[2025-10-11 07:05:53] NAME="CentOS Linux"
[2025-10-11 07:05:53] VERSION="7 (Core)"
[2025-10-11 07:05:53] ID="centos"
[2025-10-11 07:05:53] ID_LIKE="rhel fedora"
[2025-10-11 07:05:53] VERSION_ID="7"
[2025-10-11 07:05:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-11 07:05:53] ANSI_COLOR="0;31"
[2025-10-11 07:05:53] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-11 07:05:53] HOME_URL="https://www.centos.org/"
[2025-10-11 07:05:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-11 07:05:53] 
[2025-10-11 07:05:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-11 07:05:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-11 07:05:53] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-11 07:05:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-11 07:05:53] 
[2025-10-11 07:05:53] 2025-10-11 11:05:21,571 | INFO     | ***************************************
[2025-10-11 07:05:53] 2025-10-11 11:05:22,074 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-11 07:05:53] 2025-10-11 11:05:22,093 | INFO     | sufficient remaining disk space (29363273728 B)
[2025-10-11 07:05:53] 2025-10-11 11:05:22,093 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-11 07:05:53] 2025-10-11 11:05:22,093 | INFO     | current server update state: UPDATING_FINAL
[2025-10-11 07:05:53] 2025-10-11 11:05:22,093 | INFO     | update_server=False
[2025-10-11 07:05:53] 2025-10-11 11:05:22,094 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-11 07:05:53] 2025-10-11 11:05:22,094 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-11 07:05:53] 2025-10-11 11:05:22,094 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-11 07:05:53] 2025-10-11 11:05:22,095 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-11 07:05:53] 2025-10-11 11:05:22,430 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-11 07:05:53] 2025-10-11 11:05:22,430 | INFO     | aborting loop
[2025-10-11 07:05:53] 2025-10-11 11:05:22,452 | INFO     | all payload control threads have been joined
[2025-10-11 07:05:53] 2025-10-11 11:05:22,853 | INFO     | all data control threads have been joined
[2025-10-11 07:05:53] 2025-10-11 11:05:23,099 | INFO     | [job] retrieve thread has finished
[2025-10-11 07:05:53] 2025-10-11 11:05:23,100 | INFO     | [job] queue monitor thread has finished
[2025-10-11 07:05:53] 2025-10-11 11:05:23,194 | INFO     | [payload] validate_pre thread has finished
[2025-10-11 07:05:53] 2025-10-11 11:05:23,435 | INFO     | [job] job monitor thread has finished
[2025-10-11 07:05:53] 2025-10-11 11:05:23,458 | INFO     | [payload] control thread has finished
[2025-10-11 07:05:53] 2025-10-11 11:05:23,487 | INFO     | [payload] validate_post thread has finished
[2025-10-11 07:05:53] 2025-10-11 11:05:23,537 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-11 07:05:53] 2025-10-11 11:05:23,579 | INFO     | [data] copytool_in thread has finished
[2025-10-11 07:05:53] 2025-10-11 11:05:23,619 | INFO     | all job control threads have been joined
[2025-10-11 07:05:53] 2025-10-11 11:05:23,859 | INFO     | [data] control thread has finished
[2025-10-11 07:05:53] 2025-10-11 11:05:23,952 | INFO     | [payload] execute_payloads thread has finished
[2025-10-11 07:05:53] 2025-10-11 11:05:24,100 | INFO     | [data] copytool_out thread has finished
[2025-10-11 07:05:53] 2025-10-11 11:05:24,265 | INFO     | [job] validate thread has finished
[2025-10-11 07:05:53] 2025-10-11 11:05:24,521 | INFO     | [payload] failed_post thread has finished
[2025-10-11 07:05:53] 2025-10-11 11:05:24,529 | INFO     | [job] create_data_payload thread has finished
[2025-10-11 07:05:53] 2025-10-11 11:05:24,625 | INFO     | [job] control thread has finished
[2025-10-11 07:05:53] 2025-10-11 11:05:26,101 | INFO     | [data] queue_monitor thread has finished
[2025-10-11 07:05:53] 2025-10-11 11:05:31,114 | INFO     | [monitor] cgroup control has ended
[2025-10-11 07:05:53] 2025-10-11 11:05:31,801 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140330285385536)>', '<ExcThread(monitor, started 140329709717248)>']
[2025-10-11 07:05:53] 2025-10-11 11:05:36,805 | INFO     | all workflow threads have been joined
[2025-10-11 07:05:53] 2025-10-11 11:05:36,805 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-11 07:05:53] 2025-10-11 11:05:36,806 | INFO     | traces error code: 0
[2025-10-11 07:05:53] 2025-10-11 11:05:36,806 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-11 07:05:53] 2025-10-11 11:05:53,094 | INFO     | PID=17019 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-11 07:05:53] 2025-10-11 11:05:53,095 | INFO     | found 0 job(s) in 20 queues
[2025-10-11 07:05:53] 2025-10-11 11:05:53,095 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-11 07:05:53] 2025-10-11 11:05:53,095 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-11 07:05:53] 2025-10-11 11:05:53,095 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-11 07:05:53] 2025-10-11 11:05:53,096 | INFO     | [monitor] control thread has ended
[2025-10-11 07:05:53] 2025-10-11 11:05:53,183 [wrapper] ==== pilot stdout END ====
[2025-10-11 07:05:53] 2025-10-11 11:05:53,187 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-11 07:05:53] 2025-10-11 11:05:53,191 [wrapper] pilotpid: 17019
[2025-10-11 07:05:53] 2025-10-11 11:05:53,194 [wrapper] Pilot exit status: 0
[2025-10-11 07:05:53] 2025-10-11 11:05:53,210 [wrapper] pandaids: 6837875677
[2025-10-11 07:05:53] 2025-10-11 11:05:53,254 [wrapper] cleanup supervisor_pilot 30255 17020
[2025-10-11 07:05:53] 2025-10-11 11:05:53,258 [wrapper] Test setup, not cleaning
[2025-10-11 07:05:53] 2025-10-11 11:05:53,261 [wrapper] apfmon messages muted
[2025-10-11 07:05:53] 2025-10-11 11:05:53,266 [wrapper] ==== wrapper stdout END ====
[2025-10-11 07:05:53] 2025-10-11 11:05:53,270 [wrapper] ==== wrapper stderr END ====
[2025-10-11 07:05:53]  *** Error codes and diagnostics ***
[2025-10-11 07:05:53]     "exeErrorCode": 0,
[2025-10-11 07:05:53]     "exeErrorDiag": "",
[2025-10-11 07:05:53]     "pilotErrorCode": 0,
[2025-10-11 07:05:53]     "pilotErrorDiag": "",
[2025-10-11 07:05:53]  *** Listing of results directory ***
[2025-10-11 07:05:53] total 411744
[2025-10-11 07:05:53] -rwx------ 1 boincer umatlas     36292 Oct 10 20:15 runpilot2-wrapper.sh
[2025-10-11 07:05:53] -rw-r--r-- 1 boincer umatlas    557409 Oct 10 20:15 pilot3.tar.gz
[2025-10-11 07:05:53] -rw-r--r-- 1 boincer umatlas      5112 Oct 10 20:15 queuedata.json
[2025-10-11 07:05:53] -rw-r--r-- 1 boincer umatlas       100 Oct 11 05:51 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-11 07:05:53] -rwxr-xr-x 1 boincer umatlas      7986 Oct 11 05:51 run_atlas
[2025-10-11 07:05:53] -rw-r--r-- 1 boincer umatlas       105 Oct 11 05:51 job.xml
[2025-10-11 07:05:53] -rw-r--r-- 2 boincer umatlas 219147544 Oct 11 05:51 EVNT.46676267._001923.pool.root.1
[2025-10-11 07:05:53] -rw-r--r-- 2 boincer umatlas     15120 Oct 11 05:51 start_atlas.sh
[2025-10-11 07:05:53] drwxrwx--x 2 boincer umatlas      4096 Oct 11 05:51 shared
[2025-10-11 07:05:53] -rw-r--r-- 2 boincer umatlas    569677 Oct 11 05:51 input.tar.gz
[2025-10-11 07:05:53] -rw-r--r-- 1 boincer umatlas         0 Oct 11 05:51 boinc_lockfile
[2025-10-11 07:05:53] -rw-r--r-- 1 boincer umatlas      2550 Oct 11 05:51 pandaJob.out
[2025-10-11 07:05:53] -rw------- 1 boincer umatlas    975525 Oct 11 05:51 agis_schedconf.cvmfs.json
[2025-10-11 07:05:53] -rw------- 1 boincer umatlas   1560580 Oct 11 05:51 agis_ddmendpoints.agis.ALL.json
[2025-10-11 07:05:53] drwx------ 5 boincer umatlas      4096 Oct 11 05:51 pilot3
[2025-10-11 07:05:53] -rw-r--r-- 1 boincer umatlas      5952 Oct 11 07:04 init_data.xml
[2025-10-11 07:05:53] -rw------- 1 boincer umatlas 196501936 Oct 11 07:04 HITS.46676269._047631.pool.root.1
[2025-10-11 07:05:53] -rw-r--r-- 1 boincer umatlas       529 Oct 11 07:05 boinc_task_state.xml
[2025-10-11 07:05:53] -rw------- 1 boincer umatlas      1050 Oct 11 07:05 memory_monitor_summary.json
[2025-10-11 07:05:53] -rw------- 1 boincer umatlas    390906 Oct 11 07:05 log.46676269._047631.job.log.tgz.1
[2025-10-11 07:05:53] -rw------- 1 boincer umatlas      7851 Oct 11 07:05 heartbeat.json
[2025-10-11 07:05:53] -rw-r--r-- 1 boincer umatlas        27 Oct 11 07:05 wrapper_checkpoint.txt
[2025-10-11 07:05:53] -rw-r--r-- 1 boincer umatlas      8192 Oct 11 07:05 boinc_mmap_file
[2025-10-11 07:05:53] -rw------- 1 boincer umatlas       745 Oct 11 07:05 pilotlog.txt
[2025-10-11 07:05:53] -rw------- 1 boincer umatlas        95 Oct 11 07:05 pilot_heartbeat.json
[2025-10-11 07:05:53] -rw------- 1 boincer umatlas    645290 Oct 11 07:05 log.46676269._047631.job.log.1
[2025-10-11 07:05:53] -rw------- 1 boincer umatlas       357 Oct 11 07:05 output.list
[2025-10-11 07:05:53] -rw-r--r-- 1 boincer umatlas       620 Oct 11 07:05 runtime_log
[2025-10-11 07:05:53] -rw------- 1 boincer umatlas   1054720 Oct 11 07:05 result.tar.gz
[2025-10-11 07:05:53] -rw-r--r-- 1 boincer umatlas      8700 Oct 11 07:05 runtime_log.err
[2025-10-11 07:05:53] -rw------- 1 boincer umatlas       658 Oct 11 07:05 65VKDmfRcR8n9Rq4apOajLDm4fhM0noT9bVof3QYDmgpQMDmzQwFJn.diag
[2025-10-11 07:05:53] -rw-r--r-- 1 boincer umatlas     22377 Oct 11 07:05 stderr.txt
[2025-10-11 07:05:53] HITS file was successfully produced:
[2025-10-11 07:05:53] -rw------- 1 boincer umatlas 196501936 Oct 11 07:04 shared/HITS.pool.root.1
[2025-10-11 07:05:53]  *** Contents of shared directory: ***
[2025-10-11 07:05:53] total 407528
[2025-10-11 07:05:53] -rw-r--r-- 2 boincer umatlas 219147544 Oct 11 05:51 ATLAS.root_0
[2025-10-11 07:05:53] -rw-r--r-- 2 boincer umatlas     15120 Oct 11 05:51 start_atlas.sh
[2025-10-11 07:05:53] -rw-r--r-- 2 boincer umatlas    569677 Oct 11 05:51 input.tar.gz
[2025-10-11 07:05:53] -rw------- 1 boincer umatlas 196501936 Oct 11 07:04 HITS.pool.root.1
[2025-10-11 07:05:53] -rw------- 1 boincer umatlas   1054720 Oct 11 07:05 result.tar.gz
07:05:55 (13347): run_atlas exited; CPU time 47181.045025
07:05:55 (13347): called boinc_finish(0)

</stderr_txt>
]]>

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