Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
20:53:04 (2496281): wrapper (7.7.26015): starting
20:53:04 (2496281): wrapper: running run_atlas (--nthreads 3)
[2025-10-11 20:53:04] Arguments: --nthreads 3
[2025-10-11 20:53:04] Threads: 3
[2025-10-11 20:53:04] Checking for CVMFS
[2025-10-11 20:53:04] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 20:53:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 20:53:04] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 20:53:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 20:53:04] 2.9.2.0 1545274 3266 82184 151593 0 57 31105548 36864000 0 130560 0 2496519 99.990 110801 991 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-11 20:53:04] CVMFS is ok
[2025-10-11 20:53:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 20:53:04] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 20:53:04] Further information can be found at the LHC@home message board.
[2025-10-11 20:53:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 20:53:04] Checking for apptainer binary...
[2025-10-11 20:53:04] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 20:53:04] Running /usr/bin/apptainer --version
[2025-10-11 20:53:04] apptainer version 1.4.1-1.1
[2025-10-11 20:53:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 20:53:04] atlasA223
[2025-10-11 20:53:04] apptainer works
[2025-10-11 20:53:04] Set ATHENA_PROC_NUMBER=3
[2025-10-11 20:53:04] Set ATHENA_CORE_NUMBER=3
[2025-10-11 20:53:04] Starting ATLAS job with PandaID=6837960848
[2025-10-11 20:53:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-11 22:16:31]  *** The last 200 lines of the pilot log: ***
[2025-10-11 22:16:31] 2025-10-11 20:15:59,747 | INFO     | overall cleanup function is called
[2025-10-11 22:16:31] 2025-10-11 20:16:00,754 | INFO     | --- collectZombieJob: --- 10, [2506425]
[2025-10-11 22:16:31] 2025-10-11 20:16:00,754 | INFO     | zombie collector waiting for pid 2506425
[2025-10-11 22:16:31] 2025-10-11 20:16:00,754 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-11 22:16:31] 2025-10-11 20:16:00,754 | INFO     | collected zombie processes
[2025-10-11 22:16:31] 2025-10-11 20:16:00,754 | INFO     | will attempt to kill all subprocesses of pid=2506425
[2025-10-11 22:16:31] 2025-10-11 20:16:00,793 | INFO     | process IDs to be killed: [2506425] (in reverse order)
[2025-10-11 22:16:31] 2025-10-11 20:16:00,819 | WARNING  | found no corresponding commands to process id(s)
[2025-10-11 22:16:31] 2025-10-11 20:16:00,819 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-11 22:16:31] 2025-10-11 20:16:00,820 | INFO     | did not find any defunct processes belonging to 2506425
[2025-10-11 22:16:31] 2025-10-11 20:16:00,821 | INFO     | did not find any defunct processes belonging to 2506425
[2025-10-11 22:16:31] 2025-10-11 20:16:00,821 | INFO     | ready for new job
[2025-10-11 22:16:31] 2025-10-11 20:16:00,822 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-11 22:16:31] 2025-10-11 20:16:00,822 | INFO     | ***************************************
[2025-10-11 22:16:31] 2025-10-11 20:16:00,822 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-11 22:16:31] 2025-10-11 20:16:00,822 | INFO     | ***************************************
[2025-10-11 22:16:31] 2025-10-11 20:16:00,822 | INFO     | 
[2025-10-11 22:16:31] 2025-10-11 20:16:00,823 | INFO     | architecture information:
[2025-10-11 22:16:31] 2025-10-11 20:16:00,823 | INFO     | executing command: cat /etc/os-release
[2025-10-11 22:16:31] 2025-10-11 20:16:00,832 | INFO     | cat /etc/os-release:
[2025-10-11 22:16:31] NAME="CentOS Linux"
[2025-10-11 22:16:31] VERSION="7 (Core)"
[2025-10-11 22:16:31] ID="centos"
[2025-10-11 22:16:31] ID_LIKE="rhel fedora"
[2025-10-11 22:16:31] VERSION_ID="7"
[2025-10-11 22:16:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-11 22:16:31] ANSI_COLOR="0;31"
[2025-10-11 22:16:31] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-11 22:16:31] HOME_URL="https://www.centos.org/"
[2025-10-11 22:16:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-11 22:16:31] 
[2025-10-11 22:16:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-11 22:16:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-11 22:16:31] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-11 22:16:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-11 22:16:31] 
[2025-10-11 22:16:31] 2025-10-11 20:16:00,832 | INFO     | ***************************************
[2025-10-11 22:16:31] 2025-10-11 20:16:01,335 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-11 22:16:31] 2025-10-11 20:16:01,345 | INFO     | sufficient remaining disk space (373759672320 B)
[2025-10-11 22:16:31] 2025-10-11 20:16:01,346 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-11 22:16:31] 2025-10-11 20:16:01,346 | INFO     | current server update state: UPDATING_FINAL
[2025-10-11 22:16:31] 2025-10-11 20:16:01,346 | INFO     | update_server=False
[2025-10-11 22:16:31] 2025-10-11 20:16:01,346 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-11 22:16:31] 2025-10-11 20:16:01,346 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-11 22:16:31] 2025-10-11 20:16:01,346 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-11 22:16:31] 2025-10-11 20:16:01,346 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-11 22:16:31] 2025-10-11 20:16:01,346 | INFO     | aborting loop
[2025-10-11 22:16:31] 2025-10-11 20:16:01,346 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-11 22:16:31] 2025-10-11 20:16:02,247 | INFO     | all payload control threads have been joined
[2025-10-11 22:16:31] 2025-10-11 20:16:02,350 | INFO     | [job] retrieve thread has finished
[2025-10-11 22:16:31] 2025-10-11 20:16:02,351 | INFO     | [job] job monitor thread has finished
[2025-10-11 22:16:31] 2025-10-11 20:16:02,351 | INFO     | [job] queue monitor thread has finished
[2025-10-11 22:16:31] 2025-10-11 20:16:02,357 | INFO     | [payload] failed_post thread has finished
[2025-10-11 22:16:31] 2025-10-11 20:16:02,367 | INFO     | all data control threads have been joined
[2025-10-11 22:16:31] 2025-10-11 20:16:02,402 | INFO     | [payload] validate_pre thread has finished
[2025-10-11 22:16:31] 2025-10-11 20:16:02,406 | INFO     | all job control threads have been joined
[2025-10-11 22:16:31] 2025-10-11 20:16:02,862 | INFO     | [payload] validate_post thread has finished
[2025-10-11 22:16:31] 2025-10-11 20:16:03,253 | INFO     | [payload] control thread has finished
[2025-10-11 22:16:31] 2025-10-11 20:16:03,352 | INFO     | [data] copytool_out thread has finished
[2025-10-11 22:16:31] 2025-10-11 20:16:03,372 | INFO     | [data] control thread has finished
[2025-10-11 22:16:31] 2025-10-11 20:16:03,412 | INFO     | [job] control thread has finished
[2025-10-11 22:16:31] 2025-10-11 20:16:03,456 | INFO     | [data] copytool_in thread has finished
[2025-10-11 22:16:31] 2025-10-11 20:16:03,582 | INFO     | [payload] execute_payloads thread has finished
[2025-10-11 22:16:31] 2025-10-11 20:16:03,701 | INFO     | [job] validate thread has finished
[2025-10-11 22:16:31] 2025-10-11 20:16:03,834 | INFO     | [job] create_data_payload thread has finished
[2025-10-11 22:16:31] 2025-10-11 20:16:05,353 | INFO     | [data] queue_monitor thread has finished
[2025-10-11 22:16:31] 2025-10-11 20:16:11,842 | INFO     | job.realtimelogging is not enabled
[2025-10-11 22:16:31] 2025-10-11 20:16:12,847 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-11 22:16:31] 2025-10-11 20:16:15,969 | INFO     | [monitor] cgroup control has ended
[2025-10-11 22:16:31] 2025-10-11 20:16:17,686 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139725937555264)>', '<ExcThread(monitor, started 139725151139584)>']
[2025-10-11 22:16:31] 2025-10-11 20:16:22,712 | INFO     | all workflow threads have been joined
[2025-10-11 22:16:31] 2025-10-11 20:16:22,712 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-11 22:16:31] 2025-10-11 20:16:22,712 | INFO     | traces error code: 0
[2025-10-11 22:16:31] 2025-10-11 20:16:22,713 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-11 22:16:31] 2025-10-11 20:16:31,189 | INFO     | PID=2499994 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-11 22:16:31] 2025-10-11 20:16:31,189 | INFO     | found 0 job(s) in 20 queues
[2025-10-11 22:16:31] 2025-10-11 20:16:31,189 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-11 22:16:31] 2025-10-11 20:16:31,189 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-11 22:16:31] 2025-10-11 20:16:31,189 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-11 22:16:31] 2025-10-11 20:16:31,189 | INFO     | [monitor] control thread has ended
[2025-10-11 22:16:31] 2025-10-11 20:16:31,237 [wrapper] ==== pilot stdout END ====
[2025-10-11 22:16:31] 2025-10-11 20:16:31,239 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-11 22:16:31] 2025-10-11 20:16:31,242 [wrapper] pilotpid: 2499994
[2025-10-11 22:16:31] 2025-10-11 20:16:31,245 [wrapper] Pilot exit status: 0
[2025-10-11 22:16:31] 2025-10-11 20:16:31,252 [wrapper] pandaids: 6837960848
[2025-10-11 22:16:31] 2025-10-11 20:16:31,269 [wrapper] cleanup supervisor_pilot 2518432 2499995
[2025-10-11 22:16:31] 2025-10-11 20:16:31,272 [wrapper] Test setup, not cleaning
[2025-10-11 22:16:31] 2025-10-11 20:16:31,275 [wrapper] apfmon messages muted
[2025-10-11 22:16:31] 2025-10-11 20:16:31,277 [wrapper] ==== wrapper stdout END ====
[2025-10-11 22:16:31] 2025-10-11 20:16:31,280 [wrapper] ==== wrapper stderr END ====
[2025-10-11 22:16:31]  *** Error codes and diagnostics ***
[2025-10-11 22:16:31]     "exeErrorCode": 0,
[2025-10-11 22:16:31]     "exeErrorDiag": "",
[2025-10-11 22:16:31]     "pilotErrorCode": 0,
[2025-10-11 22:16:31]     "pilotErrorDiag": "",
[2025-10-11 22:16:31]  *** Listing of results directory ***
[2025-10-11 22:16:31] total 408376
[2025-10-11 22:16:31] -rw-r--r-- 1 boinc boinc    557409 Oct 11 04:25 pilot3.tar.gz
[2025-10-11 22:16:31] -rw-r--r-- 1 boinc boinc      5112 Oct 11 04:39 queuedata.json
[2025-10-11 22:16:31] -rwx------ 1 boinc boinc     36292 Oct 11 04:40 runpilot2-wrapper.sh
[2025-10-11 22:16:31] -rw-r--r-- 1 boinc boinc       100 Oct 11 20:53 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-11 22:16:31] -rwxr-xr-x 1 boinc boinc      7986 Oct 11 20:53 run_atlas
[2025-10-11 22:16:31] -rw-r--r-- 1 boinc boinc       105 Oct 11 20:53 job.xml
[2025-10-11 22:16:31] -rw-r--r-- 2 boinc boinc 219386449 Oct 11 20:53 EVNT.46676267._001990.pool.root.1
[2025-10-11 22:16:31] -rw-r--r-- 2 boinc boinc    569677 Oct 11 20:53 input.tar.gz
[2025-10-11 22:16:31] -rw-r--r-- 2 boinc boinc     15120 Oct 11 20:53 start_atlas.sh
[2025-10-11 22:16:31] drwxrwx--x 2 boinc boinc      4096 Oct 11 20:53 shared
[2025-10-11 22:16:31] -rw-r--r-- 1 boinc boinc         0 Oct 11 20:53 boinc_setup_complete
[2025-10-11 22:16:31] -rw-r--r-- 1 boinc boinc      6448 Oct 11 20:53 init_data.xml
[2025-10-11 22:16:31] -rw-r--r-- 1 boinc boinc         0 Oct 11 20:53 boinc_lockfile
[2025-10-11 22:16:31] -rw-r--r-- 1 boinc boinc      2550 Oct 11 20:53 pandaJob.out
[2025-10-11 22:16:31] -rw------- 1 boinc boinc    975520 Oct 11 20:53 agis_schedconf.cvmfs.json
[2025-10-11 22:16:31] -rw------- 1 boinc boinc   1560580 Oct 11 20:53 agis_ddmendpoints.agis.ALL.json
[2025-10-11 22:16:31] drwx------ 5 boinc boinc      4096 Oct 11 20:53 pilot3
[2025-10-11 22:16:31] -rw-r--r-- 1 boinc boinc       529 Oct 11 22:15 boinc_task_state.xml
[2025-10-11 22:16:31] -rw------- 1 boinc boinc 192935154 Oct 11 22:15 HITS.46676269._049377.pool.root.1
[2025-10-11 22:16:31] -rw------- 1 boinc boinc        95 Oct 11 22:15 pilot_heartbeat.json
[2025-10-11 22:16:31] -rw------- 1 boinc boinc      1016 Oct 11 22:15 memory_monitor_summary.json
[2025-10-11 22:16:31] -rw------- 1 boinc boinc    252868 Oct 11 22:15 log.46676269._049377.job.log.tgz.1
[2025-10-11 22:16:31] -rw------- 1 boinc boinc      7758 Oct 11 22:15 heartbeat.json
[2025-10-11 22:16:31] -rw-r--r-- 1 boinc boinc      8192 Oct 11 22:16 boinc_mmap_file
[2025-10-11 22:16:31] -rw-r--r-- 1 boinc boinc        27 Oct 11 22:16 wrapper_checkpoint.txt
[2025-10-11 22:16:31] -rw------- 1 boinc boinc       747 Oct 11 22:16 pilotlog.txt
[2025-10-11 22:16:31] -rw------- 1 boinc boinc    728976 Oct 11 22:16 log.46676269._049377.job.log.1
[2025-10-11 22:16:31] -rw------- 1 boinc boinc       357 Oct 11 22:16 output.list
[2025-10-11 22:16:31] -rw-r--r-- 1 boinc boinc       620 Oct 11 22:16 runtime_log
[2025-10-11 22:16:31] -rw------- 1 boinc boinc   1003520 Oct 11 22:16 result.tar.gz
[2025-10-11 22:16:31] -rw-r--r-- 1 boinc boinc      8792 Oct 11 22:16 runtime_log.err
[2025-10-11 22:16:31] -rw------- 1 boinc boinc       661 Oct 11 22:16 67qMDmpheR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmU9eNDms2iFkn.diag
[2025-10-11 22:16:31] -rw-r--r-- 1 boinc boinc     10804 Oct 11 22:16 stderr.txt
[2025-10-11 22:16:31] HITS file was successfully produced:
[2025-10-11 22:16:31] -rw------- 1 boinc boinc 192935154 Oct 11 22:15 shared/HITS.pool.root.1
[2025-10-11 22:16:31]  *** Contents of shared directory: ***
[2025-10-11 22:16:31] total 404228
[2025-10-11 22:16:31] -rw-r--r-- 2 boinc boinc 219386449 Oct 11 20:53 ATLAS.root_0
[2025-10-11 22:16:31] -rw-r--r-- 2 boinc boinc    569677 Oct 11 20:53 input.tar.gz
[2025-10-11 22:16:31] -rw-r--r-- 2 boinc boinc     15120 Oct 11 20:53 start_atlas.sh
[2025-10-11 22:16:31] -rw------- 1 boinc boinc 192935154 Oct 11 22:15 HITS.pool.root.1
[2025-10-11 22:16:31] -rw------- 1 boinc boinc   1003520 Oct 11 22:16 result.tar.gz
22:16:32 (2496281): run_atlas exited; CPU time 14156.028276
22:16:32 (2496281): called boinc_finish(0)

</stderr_txt>
]]>

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