Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
23:07:41 (425978): wrapper (7.7.26015): starting
23:07:41 (425978): wrapper: running run_atlas (--nthreads 4)
[2025-10-12 23:07:41] Arguments: --nthreads 4
[2025-10-12 23:07:41] Threads: 4
[2025-10-12 23:07:41] Checking for CVMFS
[2025-10-12 23:07:41] No cvmfs_config command found, will try listing directly
[2025-10-12 23:07:41] CVMFS is ok
[2025-10-12 23:07:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 23:07:41] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 23:07:41] Further information can be found at the LHC@home message board.
[2025-10-12 23:07:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 23:07:41] Checking for apptainer binary...
[2025-10-12 23:07:41] which: no apptainer in ((null))
[2025-10-12 23:07:41] apptainer is not installed, using version from CVMFS
[2025-10-12 23:07:41] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 23:07:41] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot128/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut14.grid.cesnet.cz
[2025-10-12 23:07:41] apptainer works
[2025-10-12 23:07:41] Set ATHENA_PROC_NUMBER=4
[2025-10-12 23:07:41] Set ATHENA_CORE_NUMBER=4
[2025-10-12 23:07:41] Starting ATLAS job with PandaID=6838063693
[2025-10-12 23:07:41] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot128/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 01:41:44]  *** The last 200 lines of the pilot log: ***
[2025-10-13 01:41:44] 2025-10-12 23:39:42,748 | INFO     | -- intersect: -35077001832.12823
[2025-10-13 01:41:44] 2025-10-12 23:39:42,748 | INFO     | intersect: -35077001832.12823
[2025-10-13 01:41:44] 2025-10-12 23:39:42,748 | INFO     | chi2: 1.226077763668022
[2025-10-13 01:41:44] 2025-10-12 23:39:42,748 | INFO     | sum of square deviations: 925859220.0
[2025-10-13 01:41:44] 2025-10-12 23:39:42,749 | INFO     | sum of deviations: 19632624300.0
[2025-10-13 01:41:44] 2025-10-12 23:39:42,749 | INFO     | mean x: 1760307671.5
[2025-10-13 01:41:44] 2025-10-12 23:39:42,749 | INFO     | mean y: 2298061.486111111
[2025-10-13 01:41:44] 2025-10-12 23:39:42,750 | INFO     | -- intersect: -37324606958.66081
[2025-10-13 01:41:44] 2025-10-12 23:39:42,750 | INFO     | intersect: -37324606958.66081
[2025-10-13 01:41:44] 2025-10-12 23:39:42,750 | INFO     | chi2: 1.2269149924573535
[2025-10-13 01:41:44] 2025-10-12 23:39:42,750 | INFO     | current chi2=1.2269149924573535 (change=-0.06828512955220255 %)
[2025-10-13 01:41:44] 2025-10-12 23:39:42,750 | INFO     | right removable region: 143
[2025-10-13 01:41:44] 2025-10-12 23:39:42,750 | INFO     | sum of square deviations: 925859220.0
[2025-10-13 01:41:44] 2025-10-12 23:39:42,751 | INFO     | sum of deviations: 3265865031.0
[2025-10-13 01:41:44] 2025-10-12 23:39:42,751 | INFO     | mean x: 1760307976.5
[2025-10-13 01:41:44] 2025-10-12 23:39:42,751 | INFO     | mean y: 2325034.277777778
[2025-10-13 01:41:44] 2025-10-12 23:39:42,751 | INFO     | -- intersect: -6206964823.246911
[2025-10-13 01:41:44] 2025-10-12 23:39:42,751 | INFO     | intersect: -6206964823.246911
[2025-10-13 01:41:44] 2025-10-12 23:39:42,752 | INFO     | chi2: 0.0009464986738985046
[2025-10-13 01:41:44] 2025-10-12 23:39:42,752 | INFO     | current chi2=0.0009464986738985046 (change=99.92280272084318 %)
[2025-10-13 01:41:44] 2025-10-12 23:39:42,752 | INFO     | sum of square deviations: 832722590.0
[2025-10-13 01:41:44] 2025-10-12 23:39:42,753 | INFO     | sum of deviations: 2899647565.9999995
[2025-10-13 01:41:44] 2025-10-12 23:39:42,753 | INFO     | mean x: 1760308129.0
[2025-10-13 01:41:44] 2025-10-12 23:39:42,753 | INFO     | mean y: 2325645.618705036
[2025-10-13 01:41:44] 2025-10-12 23:39:42,753 | INFO     | -- intersect: -6127294521.96299
[2025-10-13 01:41:44] 2025-10-12 23:39:42,753 | INFO     | intersect: -6127294521.96299
[2025-10-13 01:41:44] 2025-10-12 23:39:42,753 | INFO     | chi2: 0.0004181879101555967
[2025-10-13 01:41:44] 2025-10-12 23:39:42,754 | INFO     | current chi2=0.0004181879101555967 (change=55.817380236452394 %)
[2025-10-13 01:41:44] 2025-10-12 23:39:42,754 | INFO     | sum of square deviations: 746051197.5
[2025-10-13 01:41:44] 2025-10-12 23:39:42,754 | INFO     | sum of deviations: 2395252870.4999995
[2025-10-13 01:41:44] 2025-10-12 23:39:42,755 | INFO     | mean x: 1760308281.5
[2025-10-13 01:41:44] 2025-10-12 23:39:42,755 | INFO     | mean y: 2326528.4402985075
[2025-10-13 01:41:44] 2025-10-12 23:39:42,755 | INFO     | -- intersect: -5649274163.786721
[2025-10-13 01:41:44] 2025-10-12 23:39:42,755 | INFO     | intersect: -5649274163.786721
[2025-10-13 01:41:44] 2025-10-12 23:39:42,755 | INFO     | chi2: 0.000268047058693985
[2025-10-13 01:41:44] 2025-10-12 23:39:42,755 | INFO     | current chi2=0.000268047058693985 (change=35.902724066257264 %)
[2025-10-13 01:41:44] 2025-10-12 23:39:42,755 | INFO     | sum of square deviations: 665612480.0
[2025-10-13 01:41:44] 2025-10-12 23:39:42,756 | INFO     | sum of deviations: 2115688376.0000002
[2025-10-13 01:41:44] 2025-10-12 23:39:42,756 | INFO     | mean x: 1760308434.0
[2025-10-13 01:41:44] 2025-10-12 23:39:42,756 | INFO     | mean y: 2327058.899224806
[2025-10-13 01:41:44] 2025-10-12 23:39:42,756 | INFO     | -- intersect: -5592916726.1760845
[2025-10-13 01:41:44] 2025-10-12 23:39:42,756 | INFO     | intersect: -5592916726.1760845
[2025-10-13 01:41:44] 2025-10-12 23:39:42,757 | INFO     | chi2: 0.0002665431539760373
[2025-10-13 01:41:44] 2025-10-12 23:39:42,757 | INFO     | current chi2=0.0002665431539760373 (change=0.5610599591262805 %)
[2025-10-13 01:41:44] 2025-10-12 23:39:42,757 | INFO     | left removable region: 40
[2025-10-13 01:41:44] 2025-10-12 23:39:42,757 | INFO     | sum of square deviations: 338804492.0
[2025-10-13 01:41:44] 2025-10-12 23:39:42,758 | INFO     | sum of deviations: 1194152408.9999998
[2025-10-13 01:41:44] 2025-10-12 23:39:42,758 | INFO     | mean x: 1760308861.0
[2025-10-13 01:41:44] 2025-10-12 23:39:42,758 | INFO     | mean y: 2328586.2718446604
[2025-10-13 01:41:44] 2025-10-12 23:39:42,758 | INFO     | -- intersect: -6202066917.868034
[2025-10-13 01:41:44] 2025-10-12 23:39:42,758 | INFO     | intersect: -6202066917.868034
[2025-10-13 01:41:44] 2025-10-12 23:39:42,758 | INFO     | chi2: 0.00023340377206031097
[2025-10-13 01:41:44] 2025-10-12 23:39:42,758 | INFO     | -- intersect: -6202066917.868034
[2025-10-13 01:41:44] 2025-10-12 23:39:42,758 | INFO     | current memory leak: 3.52 B/s (using 103 data points, chi2=0.00)
[2025-10-13 01:41:44] 2025-10-12 23:39:42,759 | INFO     | could have reported an average CPU frequency of 2729 MHz (9 samples)
[2025-10-13 01:41:44] 2025-10-12 23:39:42,759 | INFO     | ..............................
[2025-10-13 01:41:44] 2025-10-12 23:39:42,759 | INFO     | . Timing measurements:
[2025-10-13 01:41:44] 2025-10-12 23:39:42,759 | INFO     | . get job = 0 s
[2025-10-13 01:41:44] 2025-10-12 23:39:42,759 | INFO     | . initial setup = 1 s
[2025-10-13 01:41:44] 2025-10-12 23:39:42,759 | INFO     | . payload setup = 8 s
[2025-10-13 01:41:44] 2025-10-12 23:39:42,759 | INFO     | . stage-in = 0 s
[2025-10-13 01:41:44] 2025-10-12 23:39:42,759 | INFO     | . payload execution = 9067 s
[2025-10-13 01:41:44] 2025-10-12 23:39:42,759 | INFO     | . stage-out = 0 s
[2025-10-13 01:41:44] 2025-10-12 23:39:42,759 | INFO     | . log creation = 0 s
[2025-10-13 01:41:44] 2025-10-12 23:39:42,759 | INFO     | ..............................
[2025-10-13 01:41:44] 2025-10-12 23:39:42,853 | INFO     | 
[2025-10-13 01:41:44] 2025-10-12 23:39:42,853 | INFO     | job summary report
[2025-10-13 01:41:44] 2025-10-12 23:39:42,853 | INFO     | --------------------------------------------------
[2025-10-13 01:41:44] 2025-10-12 23:39:42,853 | INFO     | PanDA job id: 6838063693
[2025-10-13 01:41:44] 2025-10-12 23:39:42,854 | INFO     | task id: 46676269
[2025-10-13 01:41:44] 2025-10-12 23:39:42,854 | INFO     | errors: (none)
[2025-10-13 01:41:44] 2025-10-12 23:39:42,854 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 01:41:44] 2025-10-12 23:39:42,854 | INFO     | pilot state: finished 
[2025-10-13 01:41:44] 2025-10-12 23:39:42,854 | INFO     | transexitcode: 0
[2025-10-13 01:41:44] 2025-10-12 23:39:42,854 | INFO     | exeerrorcode: 0
[2025-10-13 01:41:44] 2025-10-12 23:39:42,854 | INFO     | exeerrordiag: 
[2025-10-13 01:41:44] 2025-10-12 23:39:42,854 | INFO     | exitcode: 0
[2025-10-13 01:41:44] 2025-10-12 23:39:42,854 | INFO     | exitmsg: OK
[2025-10-13 01:41:44] 2025-10-12 23:39:42,854 | INFO     | cpuconsumptiontime: 34756 s
[2025-10-13 01:41:44] 2025-10-12 23:39:42,854 | INFO     | nevents: 400
[2025-10-13 01:41:44] 2025-10-12 23:39:42,854 | INFO     | neventsw: 0
[2025-10-13 01:41:44] 2025-10-12 23:39:42,855 | INFO     | pid: 514599
[2025-10-13 01:41:44] 2025-10-12 23:39:42,855 | INFO     | pgrp: 514599
[2025-10-13 01:41:44] 2025-10-12 23:39:42,855 | INFO     | corecount: 4
[2025-10-13 01:41:44] 2025-10-12 23:39:42,855 | INFO     | event service: False
[2025-10-13 01:41:44] 2025-10-12 23:39:42,855 | INFO     | sizes: {0: 2348869, 7: 2349131, 11: 2349159, 9080: 2377742, 9081: 2386764, 9083: 2386820, 9089: 2387206}
[2025-10-13 01:41:44] 2025-10-12 23:39:42,855 | INFO     | --------------------------------------------------
[2025-10-13 01:41:44] 2025-10-12 23:39:42,855 | INFO     | 
[2025-10-13 01:41:44] 2025-10-12 23:39:42,855 | INFO     | executing command: ls -lF /scratch/boinc/var/slot128/slots/0
[2025-10-13 01:41:44] 2025-10-12 23:39:42,885 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 01:41:44] 2025-10-12 23:39:42,885 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 01:41:44] 2025-10-12 23:39:42,885 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 01:41:44] 2025-10-12 23:39:42,885 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 01:41:44] 2025-10-12 23:39:42,885 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 01:41:44] 2025-10-12 23:39:42,886 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 01:41:44] 2025-10-12 23:39:42,886 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 01:41:44] 2025-10-12 23:39:42,886 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 01:41:44] 2025-10-12 23:39:42,886 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 01:41:44] 2025-10-12 23:39:42,886 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 01:41:44] 2025-10-12 23:39:42,886 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 01:41:44] 2025-10-12 23:39:42,886 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 01:41:44] 2025-10-12 23:39:42,886 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 01:41:44] 2025-10-12 23:39:42,887 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 01:41:44] 2025-10-12 23:39:42,887 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 01:41:44] 2025-10-12 23:39:42,887 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 01:41:44] 2025-10-12 23:39:42,887 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 01:41:44] 2025-10-12 23:39:42,887 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 01:41:44] 2025-10-12 23:39:42,887 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 01:41:44] 2025-10-12 23:39:42,887 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 01:41:44] 2025-10-12 23:39:42,887 | INFO     | job 6838063693 has completed (purged errors)
[2025-10-13 01:41:44] 2025-10-12 23:39:42,887 | INFO     | overall cleanup function is called
[2025-10-13 01:41:44] 2025-10-12 23:39:43,897 | INFO     | --- collectZombieJob: --- 10, [514599]
[2025-10-13 01:41:44] 2025-10-12 23:39:43,897 | INFO     | zombie collector waiting for pid 514599
[2025-10-13 01:41:44] 2025-10-12 23:39:43,897 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 01:41:44] 2025-10-12 23:39:43,897 | INFO     | collected zombie processes
[2025-10-13 01:41:44] 2025-10-12 23:39:43,897 | INFO     | will attempt to kill all subprocesses of pid=514599
[2025-10-13 01:41:44] 2025-10-12 23:39:44,643 | INFO     | process IDs to be killed: [514599] (in reverse order)
[2025-10-13 01:41:44] 2025-10-12 23:39:44,887 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 01:41:44] 2025-10-12 23:39:44,888 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 01:41:44] 2025-10-12 23:39:44,918 | INFO     | did not find any defunct processes belonging to 514599
[2025-10-13 01:41:44] 2025-10-12 23:39:44,946 | INFO     | did not find any defunct processes belonging to 514599
[2025-10-13 01:41:44] 2025-10-12 23:39:44,946 | INFO     | ready for new job
[2025-10-13 01:41:44] 2025-10-12 23:39:44,946 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 01:41:44] 2025-10-12 23:39:44,949 | INFO     | ***************************************
[2025-10-13 01:41:44] 2025-10-12 23:39:44,949 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 01:41:44] 2025-10-12 23:39:44,949 | INFO     | ***************************************
[2025-10-13 01:41:44] 2025-10-12 23:39:44,949 | INFO     | 
[2025-10-13 01:41:44] 2025-10-12 23:39:44,957 | INFO     | architecture information:
[2025-10-13 01:41:44] 2025-10-12 23:39:44,958 | INFO     | executing command: cat /etc/os-release
[2025-10-13 01:41:44] 2025-10-12 23:39:44,979 | INFO     | cat /etc/os-release:
[2025-10-13 01:41:44] NAME="CentOS Linux"
[2025-10-13 01:41:44] VERSION="7 (Core)"
[2025-10-13 01:41:44] ID="centos"
[2025-10-13 01:41:44] ID_LIKE="rhel fedora"
[2025-10-13 01:41:44] VERSION_ID="7"
[2025-10-13 01:41:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 01:41:44] ANSI_COLOR="0;31"
[2025-10-13 01:41:44] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 01:41:44] HOME_URL="https://www.centos.org/"
[2025-10-13 01:41:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 01:41:44] 
[2025-10-13 01:41:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 01:41:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 01:41:44] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 01:41:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 01:41:44] 
[2025-10-13 01:41:44] 2025-10-12 23:39:44,980 | INFO     | ***************************************
[2025-10-13 01:41:44] 2025-10-12 23:39:45,482 | INFO     | executing command: df -mP /scratch/boinc/var/slot128/slots/0
[2025-10-13 01:41:44] 2025-10-12 23:39:45,508 | INFO     | sufficient remaining disk space (3336340242432 B)
[2025-10-13 01:41:44] 2025-10-12 23:39:45,508 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 01:41:44] 2025-10-12 23:39:45,508 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 01:41:44] 2025-10-12 23:39:45,508 | INFO     | update_server=False
[2025-10-13 01:41:44] 2025-10-12 23:39:45,508 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 01:41:44] 2025-10-12 23:39:45,528 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 01:41:44] 2025-10-12 23:39:45,642 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 01:41:44] 2025-10-12 23:39:45,643 | INFO     | aborting loop
[2025-10-13 01:41:44] 2025-10-12 23:39:46,271 | INFO     | all job control threads have been joined
[2025-10-13 01:41:44] 2025-10-12 23:39:46,364 | INFO     | all data control threads have been joined
[2025-10-13 01:41:44] 2025-10-12 23:39:46,514 | INFO     | [job] retrieve thread has finished
[2025-10-13 01:41:44] 2025-10-12 23:39:46,515 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 01:41:44] 2025-10-12 23:39:46,646 | INFO     | [job] job monitor thread has finished
[2025-10-13 01:41:44] 2025-10-12 23:39:46,827 | INFO     | all payload control threads have been joined
[2025-10-13 01:41:44] 2025-10-12 23:39:47,148 | INFO     | [data] copytool_in thread has finished
[2025-10-13 01:41:44] 2025-10-12 23:39:47,206 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 01:41:44] 2025-10-12 23:39:47,276 | INFO     | [job] control thread has finished
[2025-10-13 01:41:44] 2025-10-12 23:39:47,369 | INFO     | [data] control thread has finished
[2025-10-13 01:41:44] 2025-10-12 23:39:47,402 | INFO     | [payload] validate_post thread has finished
[2025-10-13 01:41:44] 2025-10-12 23:39:47,435 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 01:41:44] 2025-10-12 23:39:47,530 | INFO     | [data] copytool_out thread has finished
[2025-10-13 01:41:44] 2025-10-12 23:39:47,537 | INFO     | [job] validate thread has finished
[2025-10-13 01:41:44] 2025-10-12 23:39:47,552 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 01:41:44] 2025-10-12 23:39:47,637 | INFO     | [payload] failed_post thread has finished
[2025-10-13 01:41:44] 2025-10-12 23:39:47,704 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 01:41:44] 2025-10-12 23:39:47,832 | INFO     | [payload] control thread has finished
[2025-10-13 01:41:44] 2025-10-12 23:39:47,863 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 01:41:44] 2025-10-12 23:39:48,868 | INFO     | [job] queue monitor thread has finished
[2025-10-13 01:41:44] 2025-10-12 23:39:51,214 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 01:41:44] 2025-10-12 23:40:09,222 | INFO     | [monitor] cgroup control has ended
[2025-10-13 01:41:44] 2025-10-12 23:40:11,010 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22792394094400)>', '<ExcThread(monitor, started 22792154085120)>']
[2025-10-13 01:41:44] 2025-10-12 23:40:14,892 | INFO     | PID=454011 has CPU usage=4.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-13 01:41:44] 2025-10-12 23:40:14,892 | INFO     | .. there are 8 such processes running
[2025-10-13 01:41:44] 2025-10-12 23:40:14,893 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 01:41:44] 2025-10-12 23:40:14,893 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 01:41:44] 2025-10-12 23:40:14,893 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 01:41:44] 2025-10-12 23:40:14,893 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 01:41:44] 2025-10-12 23:40:14,893 | INFO     | [monitor] control thread has ended
[2025-10-13 01:41:44] 2025-10-12 23:40:16,035 | INFO     | all workflow threads have been joined
[2025-10-13 01:41:44] 2025-10-12 23:40:16,035 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 01:41:44] 2025-10-12 23:40:16,036 | INFO     | traces error code: 0
[2025-10-13 01:41:44] 2025-10-12 23:40:16,036 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 01:41:44] 2025-10-12 23:40:16,192 [wrapper] ==== pilot stdout END ====
[2025-10-13 01:41:44] 2025-10-12 23:40:16,196 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 01:41:44] 2025-10-12 23:40:16,201 [wrapper] pilotpid: 454011
[2025-10-13 01:41:44] 2025-10-12 23:40:16,204 [wrapper] Pilot exit status: 0
[2025-10-13 01:41:44] 2025-10-12 23:40:16,218 [wrapper] pandaids: 6838063693
[2025-10-13 01:41:44] 2025-10-12 23:40:16,384 [wrapper] cleanup supervisor_pilot  786513 454012
[2025-10-13 01:41:44] 2025-10-12 23:40:16,391 [wrapper] Test setup, not cleaning
[2025-10-13 01:41:44] 2025-10-12 23:40:16,395 [wrapper] apfmon messages muted
[2025-10-13 01:41:44] 2025-10-12 23:40:16,398 [wrapper] ==== wrapper stdout END ====
[2025-10-13 01:41:44] 2025-10-12 23:40:16,402 [wrapper] ==== wrapper stderr END ====
[2025-10-13 01:41:44]  *** Error codes and diagnostics ***
[2025-10-13 01:41:44]     "exeErrorCode": 0,
[2025-10-13 01:41:44]     "exeErrorDiag": "",
[2025-10-13 01:41:44]     "pilotErrorCode": 0,
[2025-10-13 01:41:44]     "pilotErrorDiag": "",
[2025-10-13 01:41:44]  *** Listing of results directory ***
[2025-10-13 01:41:44] total 413872
[2025-10-13 01:41:44] -rw-r--r-- 1 boinc boinc    557409 Oct 11 05:42 pilot3.tar.gz
[2025-10-13 01:41:44] -rwx------ 1 boinc boinc     36292 Oct 11 06:08 runpilot2-wrapper.sh
[2025-10-13 01:41:44] -rw-r--r-- 1 boinc boinc      5112 Oct 11 06:08 queuedata.json
[2025-10-13 01:41:44] -rw-r--r-- 1 boinc boinc       100 Oct 12 23:07 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 01:41:44] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 23:07 run_atlas
[2025-10-13 01:41:44] -rw-r--r-- 1 boinc boinc       105 Oct 12 23:07 job.xml
[2025-10-13 01:41:44] -rw-r--r-- 1 boinc boinc      6688 Oct 12 23:07 init_data.xml
[2025-10-13 01:41:44] -rw-r--r-- 2 boinc boinc 222318777 Oct 12 23:07 EVNT.46676267._002035.pool.root.1
[2025-10-13 01:41:44] -rw-r--r-- 2 boinc boinc     15120 Oct 12 23:07 start_atlas.sh
[2025-10-13 01:41:44] drwxrwx--x 2 boinc boinc      4096 Oct 12 23:07 shared
[2025-10-13 01:41:44] -rw-r--r-- 2 boinc boinc    569676 Oct 12 23:07 input.tar.gz
[2025-10-13 01:41:44] -rw-r--r-- 1 boinc boinc         0 Oct 12 23:07 boinc_lockfile
[2025-10-13 01:41:44] -rw-r--r-- 1 boinc boinc      2550 Oct 12 23:07 pandaJob.out
[2025-10-13 01:41:44] -rw------- 1 boinc boinc    975536 Oct 12 23:07 agis_schedconf.cvmfs.json
[2025-10-13 01:41:44] -rw------- 1 boinc boinc   1560580 Oct 12 23:07 agis_ddmendpoints.agis.ALL.json
[2025-10-13 01:41:44] drwx------ 5 boinc boinc      4096 Oct 12 23:07 pilot3
[2025-10-13 01:41:44] -rw------- 1 boinc boinc 194357909 Oct 13 01:39 HITS.46676269._050570.pool.root.1
[2025-10-13 01:41:44] -rw------- 1 boinc boinc        95 Oct 13 01:39 pilot_heartbeat.json
[2025-10-13 01:41:44] -rw-r--r-- 1 boinc boinc       528 Oct 13 01:39 boinc_task_state.xml
[2025-10-13 01:41:44] -rw------- 1 boinc boinc      1025 Oct 13 01:39 memory_monitor_summary.json
[2025-10-13 01:41:44] -rw------- 1 boinc boinc    323790 Oct 13 01:39 log.46676269._050570.job.log.tgz.1
[2025-10-13 01:41:44] -rw------- 1 boinc boinc      7777 Oct 13 01:39 heartbeat.json
[2025-10-13 01:41:44] -rw------- 1 boinc boinc      4834 Oct 13 01:40 pilotlog.txt
[2025-10-13 01:41:44] -rw------- 1 boinc boinc   1285567 Oct 13 01:40 log.46676269._050570.job.log.1
[2025-10-13 01:41:44] -rw------- 1 boinc boinc       357 Oct 13 01:40 output.list
[2025-10-13 01:41:44] -rw-r--r-- 1 boinc boinc       620 Oct 13 01:40 runtime_log
[2025-10-13 01:41:44] -rw------- 1 boinc boinc   1628160 Oct 13 01:40 result.tar.gz
[2025-10-13 01:41:44] -rw-r--r-- 1 boinc boinc      9084 Oct 13 01:40 runtime_log.err
[2025-10-13 01:41:44] -rw------- 1 boinc boinc       662 Oct 13 01:40 FnIKDmy4fR8n9Rq4apOajLDm4fhM0noT9bVof3QYDmv6QMDmcPBgAn.diag
[2025-10-13 01:41:44] -rw-r--r-- 1 boinc boinc        26 Oct 13 01:41 wrapper_checkpoint.txt
[2025-10-13 01:41:44] -rw-r--r-- 1 boinc boinc      8192 Oct 13 01:41 boinc_mmap_file
[2025-10-13 01:41:44] -rw-r--r-- 1 boinc boinc     20676 Oct 13 01:41 stderr.txt
[2025-10-13 01:41:44] HITS file was successfully produced:
[2025-10-13 01:41:44] -rw------- 1 boinc boinc 194357909 Oct 13 01:39 shared/HITS.pool.root.1
[2025-10-13 01:41:44]  *** Contents of shared directory: ***
[2025-10-13 01:41:44] total 409092
[2025-10-13 01:41:44] -rw-r--r-- 2 boinc boinc 222318777 Oct 12 23:07 ATLAS.root_0
[2025-10-13 01:41:44] -rw-r--r-- 2 boinc boinc     15120 Oct 12 23:07 start_atlas.sh
[2025-10-13 01:41:44] -rw-r--r-- 2 boinc boinc    569676 Oct 12 23:07 input.tar.gz
[2025-10-13 01:41:44] -rw------- 1 boinc boinc 194357909 Oct 13 01:39 HITS.pool.root.1
[2025-10-13 01:41:44] -rw------- 1 boinc boinc   1628160 Oct 13 01:40 result.tar.gz
01:41:45 (425978): run_atlas exited; CPU time 35321.163841
01:41:45 (425978): called boinc_finish(0)

</stderr_txt>
]]>

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