Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
05:23:12 (315829): wrapper (7.7.26015): starting
05:23:12 (315829): wrapper: running run_atlas (--nthreads 12)
[2025-10-11 05:23:12] Arguments: --nthreads 12
[2025-10-11 05:23:12] Threads: 12
[2025-10-11 05:23:12] Checking for CVMFS
[2025-10-11 05:23:12] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 05:23:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 05:23:12] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 05:23:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 05:23:12] 2.13.2.0 3683012 11162 132244 151579 0 196 35669175 40960000 11043 16776704 0 116977721 99.827 55016041 32594 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-11 05:23:12] CVMFS is ok
[2025-10-11 05:23:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 05:23:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 05:23:12] Further information can be found at the LHC@home message board.
[2025-10-11 05:23:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 05:23:12] Checking for apptainer binary...
[2025-10-11 05:23:12] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 05:23:12] Running /usr/bin/apptainer --version
[2025-10-11 05:23:12] apptainer version 1.4.3-1.el9
[2025-10-11 05:23:12] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 05:23:13] c8-7-4.aglt2.org
[2025-10-11 05:23:13] apptainer works
[2025-10-11 05:23:13] Set ATHENA_PROC_NUMBER=12
[2025-10-11 05:23:13] Set ATHENA_CORE_NUMBER=12
[2025-10-11 05:23:13] Starting ATLAS job with PandaID=6837786036
[2025-10-11 05:23:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-11 05:55:32]  *** The last 200 lines of the pilot log: ***
[2025-10-11 05:55:32]  lfn=log.46676269._045524.job.log.tgz.1
[2025-10-11 05:55:32]  mtime=0
[2025-10-11 05:55:32]  protocol_id=None
[2025-10-11 05:55:32]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-11 05:55:32]  replicas=None
[2025-10-11 05:55:32]  scope=mc23_13p6TeV
[2025-10-11 05:55:32]  status=None
[2025-10-11 05:55:32]  status_code=0
[2025-10-11 05:55:32]  storage_token=
[2025-10-11 05:55:32]  surl=/tmp/boinchome/slots/5/PanDA_Pilot-6837786036/log.46676269._045524.job.log.tgz.1
[2025-10-11 05:55:32]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/82/f4/log.46676269._045524.job.log.tgz.1
[2025-10-11 05:55:32]  workdir=None
[2025-10-11 05:55:32] ]
[2025-10-11 05:55:32] 2025-10-11 09:54:24,070 | INFO     | transferring file log.46676269._045524.job.log.tgz.1 from /tmp/boinchome/slots/5/PanDA_Pilot-6837786036/log.46676269._045524.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-11 05:55:32] 2025-10-11 09:54:24,070 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/5/PanDA_Pilot-6837786036/log.46676269._045524.job.log.tgz.1 /tmp/boinchome/slots/5/log.46676269._045524.job
[2025-10-11 05:55:32] 2025-10-11 09:54:24,089 | INFO     | adding to output.list: log.46676269._045524.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/82/f4/log.46676269._045524.job.log.tg
[2025-10-11 05:55:32] 2025-10-11 09:54:24,090 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-11 05:55:32] 2025-10-11 09:54:24,090 | INFO     | summary of transferred files:
[2025-10-11 05:55:32] 2025-10-11 09:54:24,090 | INFO     |  -- lfn=log.46676269._045524.job.log.tgz.1, status_code=0, status=transferred
[2025-10-11 05:55:32] 2025-10-11 09:54:24,090 | INFO     | stage-out finished correctly
[2025-10-11 05:55:32] 2025-10-11 09:54:24,532 | INFO     | time since job start (1862s) is within the limit (172800.0s)
[2025-10-11 05:55:32] 2025-10-11 09:54:24,777 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-11 05:55:32] 2025-10-11 09:54:24,831 | INFO     | job 6837786036 has state=finished
[2025-10-11 05:55:32] 2025-10-11 09:54:24,831 | INFO     | preparing for final server update for job 6837786036 in state='finished'
[2025-10-11 05:55:32] 2025-10-11 09:54:24,831 | INFO     | this job has now completed (state=finished)
[2025-10-11 05:55:32] 2025-10-11 09:54:24,831 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-11 05:55:32] 2025-10-11 09:54:24,831 | INFO     | log transfer has been attempted: DONE
[2025-10-11 05:55:32] 2025-10-11 09:54:24,831 | INFO     | job 6837786036 has finished - writing final server update
[2025-10-11 05:55:32] 2025-10-11 09:54:24,832 | INFO     | total number of processed events: 400 (read)
[2025-10-11 05:55:32] 2025-10-11 09:54:24,832 | INFO     | executing command: lscpu
[2025-10-11 05:55:32] 2025-10-11 09:54:24,895 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-11 05:55:32] 2025-10-11 09:54:26,538 | INFO     | time since job start (1864s) is within the limit (172800.0s)
[2025-10-11 05:55:32] 2025-10-11 09:54:27,138 | WARNING  | process 325963 can no longer be monitored (due to stat problems) - aborting
[2025-10-11 05:55:32] 2025-10-11 09:54:27,138 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6837786036/memory_monitor_summary.json (trf name=prmon)
[2025-10-11 05:55:32] 2025-10-11 09:54:27,505 | INFO     | number of running child processes to parent process 325963: 1
[2025-10-11 05:55:32] 2025-10-11 09:54:27,506 | INFO     | maximum number of monitored processes: 6
[2025-10-11 05:55:32] 2025-10-11 09:54:28,302 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-11 05:55:32] 2025-10-11 09:54:28,319 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3688.4608203124967
[2025-10-11 05:55:32] 2025-10-11 09:54:28,332 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6837786036/memory_monitor_summary.json (trf name=prmon)
[2025-10-11 05:55:32] 2025-10-11 09:54:28,332 | INFO     | extracted standard info from prmon json
[2025-10-11 05:55:32] 2025-10-11 09:54:28,332 | INFO     | extracted standard memory fields from prmon json
[2025-10-11 05:55:32] 2025-10-11 09:54:28,332 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-11 05:55:32] 2025-10-11 09:54:28,333 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-11 05:55:32] 2025-10-11 09:54:28,333 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-11 05:55:32] 2025-10-11 09:54:28,333 | INFO     | fitting pss+swap vs Time
[2025-10-11 05:55:32] 2025-10-11 09:54:28,333 | INFO     | sum of square deviations: 4279150.0
[2025-10-11 05:55:32] 2025-10-11 09:54:28,333 | INFO     | sum of deviations: -448610530.99999994
[2025-10-11 05:55:32] 2025-10-11 09:54:28,333 | INFO     | mean x: 1760175632.5
[2025-10-11 05:55:32] 2025-10-11 09:54:28,334 | INFO     | mean y: 2437029.9166666665
[2025-10-11 05:55:32] 2025-10-11 09:54:28,334 | INFO     | -- intersect: 184532851983.6074
[2025-10-11 05:55:32] 2025-10-11 09:54:28,334 | INFO     | intersect: 184532851983.6074
[2025-10-11 05:55:32] 2025-10-11 09:54:28,334 | INFO     | chi2: 0.0032005041661941954
[2025-10-11 05:55:32] 2025-10-11 09:54:28,334 | INFO     | -- intersect: 184532851983.6074
[2025-10-11 05:55:32] 2025-10-11 09:54:28,334 | INFO     | current memory leak: -104.84 B/s (using 24 data points, chi2=0.00)
[2025-10-11 05:55:32] 2025-10-11 09:54:28,334 | INFO     | could have reported an average CPU frequency of 3724 MHz (5 samples)
[2025-10-11 05:55:32] 2025-10-11 09:54:28,334 | INFO     | ..............................
[2025-10-11 05:55:32] 2025-10-11 09:54:28,334 | INFO     | . Timing measurements:
[2025-10-11 05:55:32] 2025-10-11 09:54:28,334 | INFO     | . get job = 0 s
[2025-10-11 05:55:32] 2025-10-11 09:54:28,334 | INFO     | . initial setup = 2 s
[2025-10-11 05:55:32] 2025-10-11 09:54:28,334 | INFO     | . payload setup = 5 s
[2025-10-11 05:55:32] 2025-10-11 09:54:28,334 | INFO     | . stage-in = 0 s
[2025-10-11 05:55:32] 2025-10-11 09:54:28,334 | INFO     | . payload execution = 1837 s
[2025-10-11 05:55:32] 2025-10-11 09:54:28,334 | INFO     | . stage-out = 0 s
[2025-10-11 05:55:32] 2025-10-11 09:54:28,334 | INFO     | . log creation = 0 s
[2025-10-11 05:55:32] 2025-10-11 09:54:28,334 | INFO     | ..............................
[2025-10-11 05:55:32] 2025-10-11 09:54:28,389 | INFO     | 
[2025-10-11 05:55:32] 2025-10-11 09:54:28,389 | INFO     | job summary report
[2025-10-11 05:55:32] 2025-10-11 09:54:28,389 | INFO     | --------------------------------------------------
[2025-10-11 05:55:32] 2025-10-11 09:54:28,389 | INFO     | PanDA job id: 6837786036
[2025-10-11 05:55:32] 2025-10-11 09:54:28,389 | INFO     | task id: 46676269
[2025-10-11 05:55:32] 2025-10-11 09:54:28,389 | INFO     | errors: (none)
[2025-10-11 05:55:32] 2025-10-11 09:54:28,389 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-11 05:55:32] 2025-10-11 09:54:28,389 | INFO     | pilot state: finished 
[2025-10-11 05:55:32] 2025-10-11 09:54:28,389 | INFO     | transexitcode: 0
[2025-10-11 05:55:32] 2025-10-11 09:54:28,390 | INFO     | exeerrorcode: 0
[2025-10-11 05:55:32] 2025-10-11 09:54:28,390 | INFO     | exeerrordiag: 
[2025-10-11 05:55:32] 2025-10-11 09:54:28,390 | INFO     | exitcode: 0
[2025-10-11 05:55:32] 2025-10-11 09:54:28,390 | INFO     | exitmsg: OK
[2025-10-11 05:55:32] 2025-10-11 09:54:28,390 | INFO     | cpuconsumptiontime: 19622 s
[2025-10-11 05:55:32] 2025-10-11 09:54:28,390 | INFO     | nevents: 400
[2025-10-11 05:55:32] 2025-10-11 09:54:28,390 | INFO     | neventsw: 0
[2025-10-11 05:55:32] 2025-10-11 09:54:28,390 | INFO     | pid: 325963
[2025-10-11 05:55:32] 2025-10-11 09:54:28,390 | INFO     | pgrp: 325963
[2025-10-11 05:55:32] 2025-10-11 09:54:28,390 | INFO     | corecount: 12
[2025-10-11 05:55:32] 2025-10-11 09:54:28,390 | INFO     | event service: False
[2025-10-11 05:55:32] 2025-10-11 09:54:28,390 | INFO     | sizes: {0: 2348856, 4: 2349118, 11: 2349146, 1846: 2374093, 1847: 2383091, 1848: 2383147, 1851: 2383501}
[2025-10-11 05:55:32] 2025-10-11 09:54:28,390 | INFO     | --------------------------------------------------
[2025-10-11 05:55:32] 2025-10-11 09:54:28,390 | INFO     | 
[2025-10-11 05:55:32] 2025-10-11 09:54:28,390 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-10-11 05:55:32] 2025-10-11 09:54:28,407 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-11 05:55:32] 2025-10-11 09:54:28,407 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-11 05:55:32] 2025-10-11 09:54:28,407 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-11 05:55:32] 2025-10-11 09:54:28,407 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-11 05:55:32] 2025-10-11 09:54:28,407 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-11 05:55:32] 2025-10-11 09:54:28,407 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-11 05:55:32] 2025-10-11 09:54:28,407 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-11 05:55:32] 2025-10-11 09:54:28,407 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-11 05:55:32] 2025-10-11 09:54:28,407 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-11 05:55:32] 2025-10-11 09:54:28,407 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-11 05:55:32] 2025-10-11 09:54:28,407 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-11 05:55:32] 2025-10-11 09:54:28,407 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-11 05:55:32] 2025-10-11 09:54:28,407 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-11 05:55:32] 2025-10-11 09:54:28,407 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-11 05:55:32] 2025-10-11 09:54:28,407 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-11 05:55:32] 2025-10-11 09:54:28,408 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-11 05:55:32] 2025-10-11 09:54:28,408 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-11 05:55:32] 2025-10-11 09:54:28,408 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-11 05:55:32] 2025-10-11 09:54:28,408 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-11 05:55:32] 2025-10-11 09:54:28,408 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-11 05:55:32] 2025-10-11 09:54:28,408 | INFO     | job 6837786036 has completed (purged errors)
[2025-10-11 05:55:32] 2025-10-11 09:54:28,408 | INFO     | overall cleanup function is called
[2025-10-11 05:55:32] 2025-10-11 09:54:29,412 | INFO     | --- collectZombieJob: --- 10, [325963]
[2025-10-11 05:55:32] 2025-10-11 09:54:29,412 | INFO     | zombie collector waiting for pid 325963
[2025-10-11 05:55:32] 2025-10-11 09:54:29,412 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-11 05:55:32] 2025-10-11 09:54:29,413 | INFO     | collected zombie processes
[2025-10-11 05:55:32] 2025-10-11 09:54:29,413 | INFO     | will attempt to kill all subprocesses of pid=325963
[2025-10-11 05:55:32] 2025-10-11 09:54:29,765 | INFO     | process IDs to be killed: [325963] (in reverse order)
[2025-10-11 05:55:32] 2025-10-11 09:54:29,883 | WARNING  | found no corresponding commands to process id(s)
[2025-10-11 05:55:32] 2025-10-11 09:54:29,883 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-11 05:55:32] 2025-10-11 09:54:29,901 | INFO     | did not find any defunct processes belonging to 325963
[2025-10-11 05:55:32] 2025-10-11 09:54:29,917 | INFO     | did not find any defunct processes belonging to 325963
[2025-10-11 05:55:32] 2025-10-11 09:54:29,918 | INFO     | ready for new job
[2025-10-11 05:55:32] 2025-10-11 09:54:29,918 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-11 05:55:32] 2025-10-11 09:54:29,919 | INFO     | ***************************************
[2025-10-11 05:55:32] 2025-10-11 09:54:29,919 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-11 05:55:32] 2025-10-11 09:54:29,919 | INFO     | ***************************************
[2025-10-11 05:55:32] 2025-10-11 09:54:29,919 | INFO     | 
[2025-10-11 05:55:32] 2025-10-11 09:54:29,936 | INFO     | architecture information:
[2025-10-11 05:55:32] 2025-10-11 09:54:29,936 | INFO     | executing command: cat /etc/os-release
[2025-10-11 05:55:32] 2025-10-11 09:54:29,952 | INFO     | cat /etc/os-release:
[2025-10-11 05:55:32] NAME="CentOS Linux"
[2025-10-11 05:55:32] VERSION="7 (Core)"
[2025-10-11 05:55:32] ID="centos"
[2025-10-11 05:55:32] ID_LIKE="rhel fedora"
[2025-10-11 05:55:32] VERSION_ID="7"
[2025-10-11 05:55:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-11 05:55:32] ANSI_COLOR="0;31"
[2025-10-11 05:55:32] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-11 05:55:32] HOME_URL="https://www.centos.org/"
[2025-10-11 05:55:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-11 05:55:32] 
[2025-10-11 05:55:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-11 05:55:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-11 05:55:32] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-11 05:55:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-11 05:55:32] 
[2025-10-11 05:55:32] 2025-10-11 09:54:29,953 | INFO     | ***************************************
[2025-10-11 05:55:32] 2025-10-11 09:54:30,454 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-10-11 05:55:32] 2025-10-11 09:54:30,468 | INFO     | sufficient remaining disk space (167565590528 B)
[2025-10-11 05:55:32] 2025-10-11 09:54:30,469 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-11 05:55:32] 2025-10-11 09:54:30,469 | INFO     | current server update state: UPDATING_FINAL
[2025-10-11 05:55:32] 2025-10-11 09:54:30,469 | INFO     | update_server=False
[2025-10-11 05:55:32] 2025-10-11 09:54:30,469 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-11 05:55:32] 2025-10-11 09:54:30,469 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-11 05:55:32] 2025-10-11 09:54:30,837 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-11 05:55:32] 2025-10-11 09:54:30,885 | INFO     | all payload control threads have been joined
[2025-10-11 05:55:32] 2025-10-11 09:54:31,014 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-11 05:55:32] 2025-10-11 09:54:31,014 | INFO     | aborting loop
[2025-10-11 05:55:32] 2025-10-11 09:54:31,102 | INFO     | all job control threads have been joined
[2025-10-11 05:55:32] 2025-10-11 09:54:31,102 | INFO     | all data control threads have been joined
[2025-10-11 05:55:32] 2025-10-11 09:54:31,474 | INFO     | [job] retrieve thread has finished
[2025-10-11 05:55:32] 2025-10-11 09:54:31,551 | INFO     | [data] copytool_in thread has finished
[2025-10-11 05:55:32] 2025-10-11 09:54:31,819 | INFO     | [job] validate thread has finished
[2025-10-11 05:55:32] 2025-10-11 09:54:31,890 | INFO     | [payload] control thread has finished
[2025-10-11 05:55:32] 2025-10-11 09:54:31,936 | INFO     | [job] create_data_payload thread has finished
[2025-10-11 05:55:32] 2025-10-11 09:54:31,969 | INFO     | [payload] validate_post thread has finished
[2025-10-11 05:55:32] 2025-10-11 09:54:32,019 | INFO     | [job] job monitor thread has finished
[2025-10-11 05:55:32] 2025-10-11 09:54:32,102 | INFO     | [payload] validate_pre thread has finished
[2025-10-11 05:55:32] 2025-10-11 09:54:32,106 | INFO     | [job] control thread has finished
[2025-10-11 05:55:32] 2025-10-11 09:54:32,108 | INFO     | [data] control thread has finished
[2025-10-11 05:55:32] 2025-10-11 09:54:32,293 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-11 05:55:32] 2025-10-11 09:54:32,472 | INFO     | [data] copytool_out thread has finished
[2025-10-11 05:55:32] 2025-10-11 09:54:32,918 | INFO     | [payload] execute_payloads thread has finished
[2025-10-11 05:55:32] 2025-10-11 09:54:32,939 | INFO     | [payload] failed_post thread has finished
[2025-10-11 05:55:32] 2025-10-11 09:54:33,398 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-11 05:55:32] 2025-10-11 09:54:34,403 | INFO     | [job] queue monitor thread has finished
[2025-10-11 05:55:32] 2025-10-11 09:54:34,843 | INFO     | [data] queue_monitor thread has finished
[2025-10-11 05:55:32] 2025-10-11 09:55:00,126 | INFO     | PID=319548 has CPU usage=6.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-11 05:55:32] 2025-10-11 09:55:00,126 | INFO     | .. there are 15 such processes running
[2025-10-11 05:55:32] 2025-10-11 09:55:00,127 | INFO     | found 0 job(s) in 20 queues
[2025-10-11 05:55:32] 2025-10-11 09:55:00,127 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-11 05:55:32] 2025-10-11 09:55:00,127 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-11 05:55:32] 2025-10-11 09:55:25,151 | INFO     | [monitor] cgroup control has ended
[2025-10-11 05:55:32] 2025-10-11 09:55:26,906 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139943027345216)>', '<ExcThread(monitor, started 139942114096896)>']
[2025-10-11 05:55:32] 2025-10-11 09:55:27,263 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-11 05:55:32] 2025-10-11 09:55:27,264 | INFO     | [monitor] control thread has ended
[2025-10-11 05:55:32] 2025-10-11 09:55:31,932 | INFO     | all workflow threads have been joined
[2025-10-11 05:55:32] 2025-10-11 09:55:31,932 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-11 05:55:32] 2025-10-11 09:55:31,933 | INFO     | traces error code: 0
[2025-10-11 05:55:32] 2025-10-11 09:55:31,933 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-11 05:55:32] 2025-10-11 09:55:32,028 [wrapper] ==== pilot stdout END ====
[2025-10-11 05:55:32] 2025-10-11 09:55:32,031 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-11 05:55:32] 2025-10-11 09:55:32,034 [wrapper] pilotpid: 319548
[2025-10-11 05:55:32] 2025-10-11 09:55:32,038 [wrapper] Pilot exit status: 0
[2025-10-11 05:55:32] 2025-10-11 09:55:32,048 [wrapper] pandaids: 6837786036
[2025-10-11 05:55:32] 2025-10-11 09:55:32,144 [wrapper] cleanup supervisor_pilot  550617 319549
[2025-10-11 05:55:32] 2025-10-11 09:55:32,147 [wrapper] Test setup, not cleaning
[2025-10-11 05:55:32] 2025-10-11 09:55:32,150 [wrapper] apfmon messages muted
[2025-10-11 05:55:32] 2025-10-11 09:55:32,153 [wrapper] ==== wrapper stdout END ====
[2025-10-11 05:55:32] 2025-10-11 09:55:32,156 [wrapper] ==== wrapper stderr END ====
[2025-10-11 05:55:32]  *** Error codes and diagnostics ***
[2025-10-11 05:55:32]     "exeErrorCode": 0,
[2025-10-11 05:55:32]     "exeErrorDiag": "",
[2025-10-11 05:55:32]     "pilotErrorCode": 0,
[2025-10-11 05:55:32]     "pilotErrorDiag": "",
[2025-10-11 05:55:32]  *** Listing of results directory ***
[2025-10-11 05:55:32] total 406524
[2025-10-11 05:55:32] -rw-r--r--. 1 boincer umatlas    557409 Oct 10 17:22 pilot3.tar.gz
[2025-10-11 05:55:32] -rw-r--r--. 1 boincer umatlas      5112 Oct 10 17:30 queuedata.json
[2025-10-11 05:55:32] -rwx------. 1 boincer umatlas     36292 Oct 10 17:30 runpilot2-wrapper.sh
[2025-10-11 05:55:32] -rw-r--r--. 1 boincer umatlas       100 Oct 11 05:23 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-11 05:55:32] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 11 05:23 run_atlas
[2025-10-11 05:55:32] -rw-r--r--. 1 boincer umatlas       105 Oct 11 05:23 job.xml
[2025-10-11 05:55:32] -rw-r--r--. 2 boincer umatlas 219591239 Oct 11 05:23 EVNT.46676267._001841.pool.root.1
[2025-10-11 05:55:32] -rw-r--r--. 2 boincer umatlas     15120 Oct 11 05:23 start_atlas.sh
[2025-10-11 05:55:32] drwxrwx--x. 2 boincer umatlas      4096 Oct 11 05:23 shared
[2025-10-11 05:55:32] -rw-r--r--. 2 boincer umatlas    569681 Oct 11 05:23 input.tar.gz
[2025-10-11 05:55:32] -rw-r--r--. 1 boincer umatlas         0 Oct 11 05:23 boinc_lockfile
[2025-10-11 05:55:32] -rw-r--r--. 1 boincer umatlas      2549 Oct 11 05:23 pandaJob.out
[2025-10-11 05:55:32] -rw-------. 1 boincer umatlas    975525 Oct 11 05:23 agis_schedconf.cvmfs.json
[2025-10-11 05:55:32] -rw-------. 1 boincer umatlas   1560580 Oct 11 05:23 agis_ddmendpoints.agis.ALL.json
[2025-10-11 05:55:32] drwx------. 5 boincer umatlas      4096 Oct 11 05:23 pilot3
[2025-10-11 05:55:32] -rw-r--r--. 1 boincer umatlas      7163 Oct 11 05:47 init_data.xml
[2025-10-11 05:55:32] -rw-------. 1 boincer umatlas 191491990 Oct 11 05:54 HITS.46676269._045524.pool.root.1
[2025-10-11 05:55:32] -rw-r--r--. 1 boincer umatlas       529 Oct 11 05:54 boinc_task_state.xml
[2025-10-11 05:55:32] -rw-------. 1 boincer umatlas      1030 Oct 11 05:54 memory_monitor_summary.json
[2025-10-11 05:55:32] -rw-------. 1 boincer umatlas    343081 Oct 11 05:54 log.46676269._045524.job.log.tgz.1
[2025-10-11 05:55:32] -rw-------. 1 boincer umatlas      7776 Oct 11 05:54 heartbeat.json
[2025-10-11 05:55:32] -rw-------. 1 boincer umatlas        95 Oct 11 05:55 pilot_heartbeat.json
[2025-10-11 05:55:32] -rw-r--r--. 1 boincer umatlas        27 Oct 11 05:55 wrapper_checkpoint.txt
[2025-10-11 05:55:32] -rw-r--r--. 1 boincer umatlas      8192 Oct 11 05:55 boinc_mmap_file
[2025-10-11 05:55:32] -rw-------. 1 boincer umatlas      4824 Oct 11 05:55 pilotlog.txt
[2025-10-11 05:55:32] -rw-------. 1 boincer umatlas    307081 Oct 11 05:55 log.46676269._045524.job.log.1
[2025-10-11 05:55:32] -rw-------. 1 boincer umatlas       357 Oct 11 05:55 output.list
[2025-10-11 05:55:32] -rw-r--r--. 1 boincer umatlas       620 Oct 11 05:55 runtime_log
[2025-10-11 05:55:32] -rw-------. 1 boincer umatlas    665600 Oct 11 05:55 result.tar.gz
[2025-10-11 05:55:32] -rw-r--r--. 1 boincer umatlas      8695 Oct 11 05:55 runtime_log.err
[2025-10-11 05:55:32] -rw-------. 1 boincer umatlas       648 Oct 11 05:55 2iFODmmrZR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm3UeNDmZGvBSn.diag
[2025-10-11 05:55:32] -rw-r--r--. 1 boincer umatlas     21643 Oct 11 05:55 stderr.txt
[2025-10-11 05:55:32] HITS file was successfully produced:
[2025-10-11 05:55:32] -rw-------. 1 boincer umatlas 191491990 Oct 11 05:54 shared/HITS.pool.root.1
[2025-10-11 05:55:32]  *** Contents of shared directory: ***
[2025-10-11 05:55:32] total 402684
[2025-10-11 05:55:32] -rw-r--r--. 2 boincer umatlas 219591239 Oct 11 05:23 ATLAS.root_0
[2025-10-11 05:55:32] -rw-r--r--. 2 boincer umatlas     15120 Oct 11 05:23 start_atlas.sh
[2025-10-11 05:55:32] -rw-r--r--. 2 boincer umatlas    569681 Oct 11 05:23 input.tar.gz
[2025-10-11 05:55:32] -rw-------. 1 boincer umatlas 191491990 Oct 11 05:54 HITS.pool.root.1
[2025-10-11 05:55:32] -rw-------. 1 boincer umatlas    665600 Oct 11 05:55 result.tar.gz
05:55:33 (315829): run_atlas exited; CPU time 19654.505798
05:55:33 (315829): called boinc_finish(0)

</stderr_txt>
]]>

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