Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
22:56:54 (2999951): wrapper (7.7.26015): starting
22:56:54 (2999951): wrapper: running run_atlas (--nthreads 4)
[2025-10-11 22:56:54] Arguments: --nthreads 4
[2025-10-11 22:56:54] Threads: 4
[2025-10-11 22:56:54] Checking for CVMFS
[2025-10-11 22:56:55] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 22:56:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 22:56:55] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 22:56:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 22:56:55] 2.9.2.0 2829015 442 68424 151595 3 57 29539715 36864000 0 130560 0 452268 99.994 13447 1157 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-11 22:56:55] CVMFS is ok
[2025-10-11 22:56:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 22:56:55] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 22:56:55] Further information can be found at the LHC@home message board.
[2025-10-11 22:56:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 22:56:55] Checking for apptainer binary...
[2025-10-11 22:56:55] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 22:56:55] Running /usr/bin/apptainer --version
[2025-10-11 22:56:55] apptainer version 1.4.1-1.1
[2025-10-11 22:56:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 22:56:55] thA369a
[2025-10-11 22:56:55] apptainer works
[2025-10-11 22:56:55] Set ATHENA_PROC_NUMBER=4
[2025-10-11 22:56:55] Set ATHENA_CORE_NUMBER=4
[2025-10-11 22:56:55] Starting ATLAS job with PandaID=6837876153
[2025-10-11 22:56:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-11 23:57:11]  *** The last 200 lines of the pilot log: ***
[2025-10-11 23:57:11] 2025-10-11 21:56:36,638 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-11 23:57:11] 2025-10-11 21:56:36,638 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-11 23:57:11] 2025-10-11 21:56:36,638 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-11 23:57:11] 2025-10-11 21:56:36,638 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-11 23:57:11] 2025-10-11 21:56:36,638 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-11 23:57:11] 2025-10-11 21:56:36,638 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-11 23:57:11] 2025-10-11 21:56:36,638 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-11 23:57:11] 2025-10-11 21:56:36,638 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-11 23:57:11] 2025-10-11 21:56:36,638 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-11 23:57:11] 2025-10-11 21:56:36,638 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-11 23:57:11] 2025-10-11 21:56:36,639 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-11 23:57:11] 2025-10-11 21:56:36,639 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-11 23:57:11] 2025-10-11 21:56:36,639 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-11 23:57:11] 2025-10-11 21:56:36,639 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-11 23:57:11] 2025-10-11 21:56:36,639 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-11 23:57:11] 2025-10-11 21:56:36,639 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-11 23:57:11] 2025-10-11 21:56:36,639 | INFO     | job 6837876153 has completed (purged errors)
[2025-10-11 23:57:11] 2025-10-11 21:56:36,639 | INFO     | overall cleanup function is called
[2025-10-11 23:57:11] 2025-10-11 21:56:37,645 | INFO     | --- collectZombieJob: --- 10, [3010254]
[2025-10-11 23:57:11] 2025-10-11 21:56:37,646 | INFO     | zombie collector waiting for pid 3010254
[2025-10-11 23:57:11] 2025-10-11 21:56:37,646 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-11 23:57:11] 2025-10-11 21:56:37,646 | INFO     | collected zombie processes
[2025-10-11 23:57:11] 2025-10-11 21:56:37,646 | INFO     | will attempt to kill all subprocesses of pid=3010254
[2025-10-11 23:57:11] 2025-10-11 21:56:37,690 | INFO     | process IDs to be killed: [3010254] (in reverse order)
[2025-10-11 23:57:11] 2025-10-11 21:56:37,715 | WARNING  | found no corresponding commands to process id(s)
[2025-10-11 23:57:11] 2025-10-11 21:56:37,715 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-11 23:57:11] 2025-10-11 21:56:37,716 | INFO     | did not find any defunct processes belonging to 3010254
[2025-10-11 23:57:11] 2025-10-11 21:56:37,717 | INFO     | did not find any defunct processes belonging to 3010254
[2025-10-11 23:57:11] 2025-10-11 21:56:37,718 | INFO     | ready for new job
[2025-10-11 23:57:11] 2025-10-11 21:56:37,718 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-11 23:57:11] 2025-10-11 21:56:37,718 | INFO     | ***************************************
[2025-10-11 23:57:11] 2025-10-11 21:56:37,718 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-11 23:57:11] 2025-10-11 21:56:37,718 | INFO     | ***************************************
[2025-10-11 23:57:11] 2025-10-11 21:56:37,718 | INFO     | 
[2025-10-11 23:57:11] 2025-10-11 21:56:37,719 | INFO     | architecture information:
[2025-10-11 23:57:11] 2025-10-11 21:56:37,719 | INFO     | executing command: cat /etc/os-release
[2025-10-11 23:57:11] 2025-10-11 21:56:37,728 | INFO     | cat /etc/os-release:
[2025-10-11 23:57:11] NAME="CentOS Linux"
[2025-10-11 23:57:11] VERSION="7 (Core)"
[2025-10-11 23:57:11] ID="centos"
[2025-10-11 23:57:11] ID_LIKE="rhel fedora"
[2025-10-11 23:57:11] VERSION_ID="7"
[2025-10-11 23:57:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-11 23:57:11] ANSI_COLOR="0;31"
[2025-10-11 23:57:11] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-11 23:57:11] HOME_URL="https://www.centos.org/"
[2025-10-11 23:57:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-11 23:57:11] 
[2025-10-11 23:57:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-11 23:57:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-11 23:57:11] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-11 23:57:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-11 23:57:11] 
[2025-10-11 23:57:11] 2025-10-11 21:56:37,728 | INFO     | ***************************************
[2025-10-11 23:57:11] 2025-10-11 21:56:38,232 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-11 23:57:11] 2025-10-11 21:56:38,244 | INFO     | sufficient remaining disk space (229523849216 B)
[2025-10-11 23:57:11] 2025-10-11 21:56:38,244 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-11 23:57:11] 2025-10-11 21:56:38,244 | INFO     | current server update state: UPDATING_FINAL
[2025-10-11 23:57:11] 2025-10-11 21:56:38,244 | INFO     | update_server=False
[2025-10-11 23:57:11] 2025-10-11 21:56:38,244 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-11 23:57:11] 2025-10-11 21:56:38,244 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-11 23:57:11] 2025-10-11 21:56:38,244 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-11 23:57:11] 2025-10-11 21:56:38,244 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-11 23:57:11] 2025-10-11 21:56:38,245 | INFO     | aborting loop
[2025-10-11 23:57:11] 2025-10-11 21:56:38,306 | INFO     | all job control threads have been joined
[2025-10-11 23:57:11] 2025-10-11 21:56:38,422 | INFO     | all payload control threads have been joined
[2025-10-11 23:57:11] 2025-10-11 21:56:39,079 | INFO     | all data control threads have been joined
[2025-10-11 23:57:11] 2025-10-11 21:56:39,250 | INFO     | [job] retrieve thread has finished
[2025-10-11 23:57:11] 2025-10-11 21:56:39,250 | INFO     | [job] queue monitor thread has finished
[2025-10-11 23:57:11] 2025-10-11 21:56:39,250 | INFO     | [job] job monitor thread has finished
[2025-10-11 23:57:11] 2025-10-11 21:56:39,312 | INFO     | [job] control thread has finished
[2025-10-11 23:57:11] 2025-10-11 21:56:39,428 | INFO     | [payload] control thread has finished
[2025-10-11 23:57:11] 2025-10-11 21:56:39,478 | INFO     | [data] copytool_in thread has finished
[2025-10-11 23:57:11] 2025-10-11 21:56:39,817 | INFO     | [payload] failed_post thread has finished
[2025-10-11 23:57:11] 2025-10-11 21:56:39,908 | INFO     | [job] validate thread has finished
[2025-10-11 23:57:11] 2025-10-11 21:56:39,976 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-11 23:57:11] 2025-10-11 21:56:40,005 | INFO     | [job] create_data_payload thread has finished
[2025-10-11 23:57:11] 2025-10-11 21:56:40,063 | INFO     | [payload] validate_pre thread has finished
[2025-10-11 23:57:11] 2025-10-11 21:56:40,085 | INFO     | [data] control thread has finished
[2025-10-11 23:57:11] 2025-10-11 21:56:40,250 | INFO     | [data] copytool_out thread has finished
[2025-10-11 23:57:11] 2025-10-11 21:56:40,349 | INFO     | [payload] validate_post thread has finished
[2025-10-11 23:57:11] 2025-10-11 21:56:40,633 | INFO     | [payload] execute_payloads thread has finished
[2025-10-11 23:57:11] 2025-10-11 21:56:43,983 | INFO     | [data] queue_monitor thread has finished
[2025-10-11 23:57:11] 2025-10-11 21:56:48,970 | INFO     | job.realtimelogging is not enabled
[2025-10-11 23:57:11] 2025-10-11 21:56:49,974 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-11 23:57:11] 2025-10-11 21:57:01,127 [wrapper] supervise_pilot (15 min periods counter: 5)
[2025-10-11 23:57:11] 2025-10-11 21:57:04,685 | INFO     | [monitor] cgroup control has ended
[2025-10-11 23:57:11] 2025-10-11 21:57:05,915 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140535361136448)>', '<ExcThread(monitor, started 140534282712832)>']
[2025-10-11 23:57:11] 2025-10-11 21:57:08,839 | INFO     | PID=3003720 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-11 23:57:11] 2025-10-11 21:57:08,839 | INFO     | found 0 job(s) in 20 queues
[2025-10-11 23:57:11] 2025-10-11 21:57:08,840 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-11 23:57:11] 2025-10-11 21:57:08,840 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-11 23:57:11] 2025-10-11 21:57:08,840 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-11 23:57:11] 2025-10-11 21:57:08,840 | INFO     | [monitor] control thread has ended
[2025-10-11 23:57:11] 2025-10-11 21:57:10,940 | INFO     | all workflow threads have been joined
[2025-10-11 23:57:11] 2025-10-11 21:57:10,940 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-11 23:57:11] 2025-10-11 21:57:10,941 | INFO     | traces error code: 0
[2025-10-11 23:57:11] 2025-10-11 21:57:10,941 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-11 23:57:11] 2025-10-11 21:57:10,995 [wrapper] ==== pilot stdout END ====
[2025-10-11 23:57:11] 2025-10-11 21:57:10,997 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-11 23:57:11] 2025-10-11 21:57:10,999 [wrapper] pilotpid: 3003720
[2025-10-11 23:57:11] 2025-10-11 21:57:11,001 [wrapper] Pilot exit status: 0
[2025-10-11 23:57:11] 2025-10-11 21:57:11,009 [wrapper] pandaids: 6837876153
[2025-10-11 23:57:11] 2025-10-11 21:57:11,025 [wrapper] cleanup supervisor_pilot 3022434 3003721
[2025-10-11 23:57:11] 2025-10-11 21:57:11,027 [wrapper] Test setup, not cleaning
[2025-10-11 23:57:11] 2025-10-11 21:57:11,029 [wrapper] apfmon messages muted
[2025-10-11 23:57:11] 2025-10-11 21:57:11,032 [wrapper] ==== wrapper stdout END ====
[2025-10-11 23:57:11] 2025-10-11 21:57:11,034 [wrapper] ==== wrapper stderr END ====
[2025-10-11 23:57:11]  *** Error codes and diagnostics ***
[2025-10-11 23:57:11]     "exeErrorCode": 0,
[2025-10-11 23:57:11]     "exeErrorDiag": "",
[2025-10-11 23:57:11]     "pilotErrorCode": 0,
[2025-10-11 23:57:11]     "pilotErrorDiag": "",
[2025-10-11 23:57:11]  *** Listing of results directory ***
[2025-10-11 23:57:11] total 403072
[2025-10-11 23:57:11] -rw-r--r-- 1 boinc boinc    557409 Oct 11 02:33 pilot3.tar.gz
[2025-10-11 23:57:11] -rw-r--r-- 1 boinc boinc      5112 Oct 11 02:45 queuedata.json
[2025-10-11 23:57:11] -rwx------ 1 boinc boinc     36292 Oct 11 02:46 runpilot2-wrapper.sh
[2025-10-11 23:57:11] -rw-r--r-- 1 boinc boinc       100 Oct 11 22:56 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-11 23:57:11] -rwxr-xr-x 1 boinc boinc      7986 Oct 11 22:56 run_atlas
[2025-10-11 23:57:11] -rw-r--r-- 1 boinc boinc       105 Oct 11 22:56 job.xml
[2025-10-11 23:57:11] -rw-r--r-- 2 boinc boinc 220182639 Oct 11 22:56 EVNT.46676267._001940.pool.root.1
[2025-10-11 23:57:11] -rw-r--r-- 2 boinc boinc    569682 Oct 11 22:56 input.tar.gz
[2025-10-11 23:57:11] -rw-r--r-- 2 boinc boinc     15120 Oct 11 22:56 start_atlas.sh
[2025-10-11 23:57:11] drwxrwx--x 2 boinc boinc      4096 Oct 11 22:56 shared
[2025-10-11 23:57:11] -rw-r--r-- 1 boinc boinc         0 Oct 11 22:56 boinc_setup_complete
[2025-10-11 23:57:11] -rw-r--r-- 1 boinc boinc      6443 Oct 11 22:56 init_data.xml
[2025-10-11 23:57:11] -rw-r--r-- 1 boinc boinc         0 Oct 11 22:56 boinc_lockfile
[2025-10-11 23:57:11] -rw-r--r-- 1 boinc boinc      2550 Oct 11 22:56 pandaJob.out
[2025-10-11 23:57:11] -rw------- 1 boinc boinc    975528 Oct 11 22:57 agis_schedconf.cvmfs.json
[2025-10-11 23:57:11] -rw------- 1 boinc boinc   1560580 Oct 11 22:57 agis_ddmendpoints.agis.ALL.json
[2025-10-11 23:57:11] drwx------ 5 boinc boinc      4096 Oct 11 22:57 pilot3
[2025-10-11 23:57:11] -rw------- 1 boinc boinc 187109241 Oct 11 23:56 HITS.46676269._048042.pool.root.1
[2025-10-11 23:57:11] -rw-r--r-- 1 boinc boinc       529 Oct 11 23:56 boinc_task_state.xml
[2025-10-11 23:57:11] -rw------- 1 boinc boinc        95 Oct 11 23:56 pilot_heartbeat.json
[2025-10-11 23:57:11] -rw------- 1 boinc boinc      1028 Oct 11 23:56 memory_monitor_summary.json
[2025-10-11 23:57:11] -rw------- 1 boinc boinc    241134 Oct 11 23:56 log.46676269._048042.job.log.tgz.1
[2025-10-11 23:57:11] -rw------- 1 boinc boinc      7752 Oct 11 23:56 heartbeat.json
[2025-10-11 23:57:11] -rw------- 1 boinc boinc      4824 Oct 11 23:57 pilotlog.txt
[2025-10-11 23:57:11] -rw-r--r-- 1 boinc boinc      8192 Oct 11 23:57 boinc_mmap_file
[2025-10-11 23:57:11] -rw-r--r-- 1 boinc boinc        27 Oct 11 23:57 wrapper_checkpoint.txt
[2025-10-11 23:57:11] -rw------- 1 boinc boinc    539154 Oct 11 23:57 log.46676269._048042.job.log.1
[2025-10-11 23:57:11] -rw------- 1 boinc boinc       357 Oct 11 23:57 output.list
[2025-10-11 23:57:11] -rw-r--r-- 1 boinc boinc       620 Oct 11 23:57 runtime_log
[2025-10-11 23:57:11] -rw------- 1 boinc boinc    798720 Oct 11 23:57 result.tar.gz
[2025-10-11 23:57:11] -rw-r--r-- 1 boinc boinc      8782 Oct 11 23:57 runtime_log.err
[2025-10-11 23:57:11] -rw------- 1 boinc boinc       658 Oct 11 23:57 EH2LDmpvcR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmMveNDmWntSKo.diag
[2025-10-11 23:57:11] -rw-r--r-- 1 boinc boinc     12644 Oct 11 23:57 stderr.txt
[2025-10-11 23:57:11] HITS file was successfully produced:
[2025-10-11 23:57:11] -rw------- 1 boinc boinc 187109241 Oct 11 23:56 shared/HITS.pool.root.1
[2025-10-11 23:57:11]  *** Contents of shared directory: ***
[2025-10-11 23:57:11] total 399112
[2025-10-11 23:57:11] -rw-r--r-- 2 boinc boinc 220182639 Oct 11 22:56 ATLAS.root_0
[2025-10-11 23:57:11] -rw-r--r-- 2 boinc boinc    569682 Oct 11 22:56 input.tar.gz
[2025-10-11 23:57:11] -rw-r--r-- 2 boinc boinc     15120 Oct 11 22:56 start_atlas.sh
[2025-10-11 23:57:11] -rw------- 1 boinc boinc 187109241 Oct 11 23:56 HITS.pool.root.1
[2025-10-11 23:57:11] -rw------- 1 boinc boinc    798720 Oct 11 23:57 result.tar.gz
23:57:12 (2999951): run_atlas exited; CPU time 13256.386109
23:57:12 (2999951): called boinc_finish(0)

</stderr_txt>
]]>

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