Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
20:38:00 (2647644): wrapper (7.7.26015): starting
20:38:00 (2647644): wrapper: running run_atlas (--nthreads 3)
[2025-10-11 20:38:00] Arguments: --nthreads 3
[2025-10-11 20:38:00] Threads: 3
[2025-10-11 20:38:00] Checking for CVMFS
[2025-10-11 20:38:00] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 20:38:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 20:38:00] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 20:38:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 20:38:01] 2.9.2.0 1718076 3292 68768 151593 3 57 28992063 36864000 0 130560 0 2430846 99.990 108085 1010 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-11 20:38:01] CVMFS is ok
[2025-10-11 20:38:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 20:38:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 20:38:01] Further information can be found at the LHC@home message board.
[2025-10-11 20:38:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 20:38:01] Checking for apptainer binary...
[2025-10-11 20:38:01] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 20:38:01] Running /usr/bin/apptainer --version
[2025-10-11 20:38:01] apptainer version 1.4.1-1.1
[2025-10-11 20:38:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 20:38:01] thA333
[2025-10-11 20:38:01] apptainer works
[2025-10-11 20:38:01] Set ATHENA_PROC_NUMBER=3
[2025-10-11 20:38:01] Set ATHENA_CORE_NUMBER=3
[2025-10-11 20:38:01] Starting ATLAS job with PandaID=6838119538
[2025-10-11 20:38:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-11 22:13:25]  *** The last 200 lines of the pilot log: ***
[2025-10-11 22:13:25] 2025-10-11 20:12:39,741 | INFO     | overall cleanup function is called
[2025-10-11 22:13:25] 2025-10-11 20:12:40,748 | INFO     | --- collectZombieJob: --- 10, [2657836]
[2025-10-11 22:13:25] 2025-10-11 20:12:40,748 | INFO     | zombie collector waiting for pid 2657836
[2025-10-11 22:13:25] 2025-10-11 20:12:40,748 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-11 22:13:25] 2025-10-11 20:12:40,749 | INFO     | collected zombie processes
[2025-10-11 22:13:25] 2025-10-11 20:12:40,749 | INFO     | will attempt to kill all subprocesses of pid=2657836
[2025-10-11 22:13:25] 2025-10-11 20:12:40,788 | INFO     | process IDs to be killed: [2657836] (in reverse order)
[2025-10-11 22:13:25] 2025-10-11 20:12:40,812 | WARNING  | found no corresponding commands to process id(s)
[2025-10-11 22:13:25] 2025-10-11 20:12:40,813 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-11 22:13:25] 2025-10-11 20:12:40,814 | INFO     | did not find any defunct processes belonging to 2657836
[2025-10-11 22:13:25] 2025-10-11 20:12:40,814 | INFO     | did not find any defunct processes belonging to 2657836
[2025-10-11 22:13:25] 2025-10-11 20:12:40,815 | INFO     | ready for new job
[2025-10-11 22:13:25] 2025-10-11 20:12:40,815 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-11 22:13:25] 2025-10-11 20:12:40,815 | INFO     | ***************************************
[2025-10-11 22:13:25] 2025-10-11 20:12:40,815 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-11 22:13:25] 2025-10-11 20:12:40,815 | INFO     | ***************************************
[2025-10-11 22:13:25] 2025-10-11 20:12:40,815 | INFO     | 
[2025-10-11 22:13:25] 2025-10-11 20:12:40,816 | INFO     | architecture information:
[2025-10-11 22:13:25] 2025-10-11 20:12:40,816 | INFO     | executing command: cat /etc/os-release
[2025-10-11 22:13:25] 2025-10-11 20:12:40,824 | INFO     | cat /etc/os-release:
[2025-10-11 22:13:25] NAME="CentOS Linux"
[2025-10-11 22:13:25] VERSION="7 (Core)"
[2025-10-11 22:13:25] ID="centos"
[2025-10-11 22:13:25] ID_LIKE="rhel fedora"
[2025-10-11 22:13:25] VERSION_ID="7"
[2025-10-11 22:13:25] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-11 22:13:25] ANSI_COLOR="0;31"
[2025-10-11 22:13:25] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-11 22:13:25] HOME_URL="https://www.centos.org/"
[2025-10-11 22:13:25] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-11 22:13:25] 
[2025-10-11 22:13:25] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-11 22:13:25] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-11 22:13:25] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-11 22:13:25] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-11 22:13:25] 
[2025-10-11 22:13:25] 2025-10-11 20:12:40,824 | INFO     | ***************************************
[2025-10-11 22:13:25] 2025-10-11 20:12:41,328 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-11 22:13:25] 2025-10-11 20:12:41,341 | INFO     | sufficient remaining disk space (230741245952 B)
[2025-10-11 22:13:25] 2025-10-11 20:12:41,341 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-11 22:13:25] 2025-10-11 20:12:41,341 | INFO     | current server update state: UPDATING_FINAL
[2025-10-11 22:13:25] 2025-10-11 20:12:41,341 | INFO     | update_server=False
[2025-10-11 22:13:25] 2025-10-11 20:12:41,341 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-11 22:13:25] 2025-10-11 20:12:41,341 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-11 22:13:25] 2025-10-11 20:12:41,341 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-11 22:13:25] 2025-10-11 20:12:41,341 | INFO     | aborting loop
[2025-10-11 22:13:25] 2025-10-11 20:12:41,341 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-11 22:13:25] 2025-10-11 20:12:41,707 | INFO     | all job control threads have been joined
[2025-10-11 22:13:25] 2025-10-11 20:12:41,985 | INFO     | all payload control threads have been joined
[2025-10-11 22:13:25] 2025-10-11 20:12:42,346 | INFO     | [job] retrieve thread has finished
[2025-10-11 22:13:25] 2025-10-11 20:12:42,346 | INFO     | [job] job monitor thread has finished
[2025-10-11 22:13:25] 2025-10-11 20:12:42,347 | INFO     | [job] queue monitor thread has finished
[2025-10-11 22:13:25] 2025-10-11 20:12:42,390 | INFO     | all data control threads have been joined
[2025-10-11 22:13:25] 2025-10-11 20:12:42,657 | INFO     | [payload] validate_post thread has finished
[2025-10-11 22:13:25] 2025-10-11 20:12:42,713 | INFO     | [job] control thread has finished
[2025-10-11 22:13:25] 2025-10-11 20:12:42,776 | INFO     | [data] copytool_in thread has finished
[2025-10-11 22:13:25] 2025-10-11 20:12:42,848 | INFO     | [payload] failed_post thread has finished
[2025-10-11 22:13:25] 2025-10-11 20:12:42,986 | INFO     | [payload] control thread has finished
[2025-10-11 22:13:25] 2025-10-11 20:12:43,347 | INFO     | [data] copytool_out thread has finished
[2025-10-11 22:13:25] 2025-10-11 20:12:43,381 | INFO     | [job] create_data_payload thread has finished
[2025-10-11 22:13:25] 2025-10-11 20:12:43,395 | INFO     | [data] control thread has finished
[2025-10-11 22:13:25] 2025-10-11 20:12:43,498 | INFO     | [job] validate thread has finished
[2025-10-11 22:13:25] 2025-10-11 20:12:43,533 | INFO     | [payload] execute_payloads thread has finished
[2025-10-11 22:13:25] 2025-10-11 20:12:43,675 | INFO     | [payload] validate_pre thread has finished
[2025-10-11 22:13:25] 2025-10-11 20:12:44,699 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-11 22:13:25] 2025-10-11 20:12:48,706 | INFO     | [data] queue_monitor thread has finished
[2025-10-11 22:13:25] 2025-10-11 20:12:51,786 | INFO     | job.realtimelogging is not enabled
[2025-10-11 22:13:25] 2025-10-11 20:12:52,792 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-11 22:13:25] 2025-10-11 20:13:11,183 | INFO     | 5670s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-10-11 22:13:25] 2025-10-11 20:13:12,241 | INFO     | PID=2651378 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-11 22:13:25] 2025-10-11 20:13:12,241 | INFO     | found 0 job(s) in 20 queues
[2025-10-11 22:13:25] 2025-10-11 20:13:12,241 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-11 22:13:25] 2025-10-11 20:13:12,241 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-11 22:13:25] 2025-10-11 20:13:18,682 | INFO     | [monitor] cgroup control has ended
[2025-10-11 22:13:25] 2025-10-11 20:13:19,398 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140562945574720)>', '<ExcThread(monitor, started 140562325825280)>']
[2025-10-11 22:13:25] 2025-10-11 20:13:20,283 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-11 22:13:25] 2025-10-11 20:13:20,283 | INFO     | [monitor] control thread has ended
[2025-10-11 22:13:25] 2025-10-11 20:13:24,402 | INFO     | all workflow threads have been joined
[2025-10-11 22:13:25] 2025-10-11 20:13:24,404 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-11 22:13:25] 2025-10-11 20:13:24,404 | INFO     | traces error code: 0
[2025-10-11 22:13:25] 2025-10-11 20:13:24,405 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-11 22:13:25] 2025-10-11 20:13:25,143 [wrapper] ==== pilot stdout END ====
[2025-10-11 22:13:25] 2025-10-11 20:13:25,146 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-11 22:13:25] 2025-10-11 20:13:25,148 [wrapper] pilotpid: 2651378
[2025-10-11 22:13:25] 2025-10-11 20:13:25,151 [wrapper] Pilot exit status: 0
[2025-10-11 22:13:25] 2025-10-11 20:13:25,161 [wrapper] pandaids: 6838119538
[2025-10-11 22:13:25] 2025-10-11 20:13:25,188 [wrapper] cleanup supervisor_pilot 2670954 2651379
[2025-10-11 22:13:25] 2025-10-11 20:13:25,191 [wrapper] Test setup, not cleaning
[2025-10-11 22:13:25] 2025-10-11 20:13:25,194 [wrapper] apfmon messages muted
[2025-10-11 22:13:25] 2025-10-11 20:13:25,196 [wrapper] ==== wrapper stdout END ====
[2025-10-11 22:13:25] 2025-10-11 20:13:25,198 [wrapper] ==== wrapper stderr END ====
[2025-10-11 22:13:25]  *** Error codes and diagnostics ***
[2025-10-11 22:13:25]     "exeErrorCode": 0,
[2025-10-11 22:13:25]     "exeErrorDiag": "",
[2025-10-11 22:13:25]     "pilotErrorCode": 0,
[2025-10-11 22:13:25]     "pilotErrorDiag": "",
[2025-10-11 22:13:25]  *** Listing of results directory ***
[2025-10-11 22:13:25] total 419572
[2025-10-11 22:13:25] -rw-r--r-- 1 boinc boinc    557409 Oct 11 08:35 pilot3.tar.gz
[2025-10-11 22:13:25] -rw-r--r-- 1 boinc boinc      5112 Oct 11 08:40 queuedata.json
[2025-10-11 22:13:25] -rwx------ 1 boinc boinc     36292 Oct 11 08:41 runpilot2-wrapper.sh
[2025-10-11 22:13:25] -rw-r--r-- 1 boinc boinc       100 Oct 11 20:38 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-11 22:13:25] -rwxr-xr-x 1 boinc boinc      7986 Oct 11 20:38 run_atlas
[2025-10-11 22:13:25] -rw-r--r-- 1 boinc boinc       105 Oct 11 20:38 job.xml
[2025-10-11 22:13:25] -rw-r--r-- 2 boinc boinc 223096344 Oct 11 20:38 EVNT.46676267._002125.pool.root.1
[2025-10-11 22:13:25] -rw-r--r-- 2 boinc boinc    569678 Oct 11 20:38 input.tar.gz
[2025-10-11 22:13:25] -rw-r--r-- 2 boinc boinc     15120 Oct 11 20:38 start_atlas.sh
[2025-10-11 22:13:25] drwxrwx--x 2 boinc boinc      4096 Oct 11 20:38 shared
[2025-10-11 22:13:25] -rw-r--r-- 1 boinc boinc         0 Oct 11 20:38 boinc_setup_complete
[2025-10-11 22:13:25] -rw-r--r-- 1 boinc boinc      6197 Oct 11 20:38 init_data.xml
[2025-10-11 22:13:25] -rw-r--r-- 1 boinc boinc         0 Oct 11 20:38 boinc_lockfile
[2025-10-11 22:13:25] -rw-r--r-- 1 boinc boinc      2550 Oct 11 20:38 pandaJob.out
[2025-10-11 22:13:25] -rw------- 1 boinc boinc    975520 Oct 11 20:38 agis_schedconf.cvmfs.json
[2025-10-11 22:13:25] -rw------- 1 boinc boinc   1560580 Oct 11 20:38 agis_ddmendpoints.agis.ALL.json
[2025-10-11 22:13:25] drwx------ 5 boinc boinc      4096 Oct 11 20:38 pilot3
[2025-10-11 22:13:25] -rw------- 1 boinc boinc 200444496 Oct 11 22:12 HITS.46676269._052888.pool.root.1
[2025-10-11 22:13:25] -rw-r--r-- 1 boinc boinc       529 Oct 11 22:12 boinc_task_state.xml
[2025-10-11 22:13:25] -rw------- 1 boinc boinc      1032 Oct 11 22:12 memory_monitor_summary.json
[2025-10-11 22:13:25] -rw------- 1 boinc boinc    275996 Oct 11 22:12 log.46676269._052888.job.log.tgz.1
[2025-10-11 22:13:25] -rw------- 1 boinc boinc      7764 Oct 11 22:12 heartbeat.json
[2025-10-11 22:13:25] -rw------- 1 boinc boinc        95 Oct 11 22:12 pilot_heartbeat.json
[2025-10-11 22:13:25] -rw-r--r-- 1 boinc boinc      8192 Oct 11 22:13 boinc_mmap_file
[2025-10-11 22:13:25] -rw-r--r-- 1 boinc boinc        27 Oct 11 22:13 wrapper_checkpoint.txt
[2025-10-11 22:13:25] -rw------- 1 boinc boinc      4939 Oct 11 22:13 pilotlog.txt
[2025-10-11 22:13:25] -rw------- 1 boinc boinc    827250 Oct 11 22:13 log.46676269._052888.job.log.1
[2025-10-11 22:13:25] -rw------- 1 boinc boinc       357 Oct 11 22:13 output.list
[2025-10-11 22:13:25] -rw-r--r-- 1 boinc boinc       620 Oct 11 22:13 runtime_log
[2025-10-11 22:13:25] -rw------- 1 boinc boinc   1126400 Oct 11 22:13 result.tar.gz
[2025-10-11 22:13:25] -rw-r--r-- 1 boinc boinc      8777 Oct 11 22:13 runtime_log.err
[2025-10-11 22:13:25] -rw------- 1 boinc boinc       658 Oct 11 22:13 NBNLDm7SiR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmidfNDmZnYmQo.diag
[2025-10-11 22:13:25] -rw-r--r-- 1 boinc boinc     10939 Oct 11 22:13 stderr.txt
[2025-10-11 22:13:25] HITS file was successfully produced:
[2025-10-11 22:13:25] -rw------- 1 boinc boinc 200444496 Oct 11 22:12 shared/HITS.pool.root.1
[2025-10-11 22:13:25]  *** Contents of shared directory: ***
[2025-10-11 22:13:25] total 415300
[2025-10-11 22:13:25] -rw-r--r-- 2 boinc boinc 223096344 Oct 11 20:38 ATLAS.root_0
[2025-10-11 22:13:25] -rw-r--r-- 2 boinc boinc    569678 Oct 11 20:38 input.tar.gz
[2025-10-11 22:13:25] -rw-r--r-- 2 boinc boinc     15120 Oct 11 20:38 start_atlas.sh
[2025-10-11 22:13:25] -rw------- 1 boinc boinc 200444496 Oct 11 22:12 HITS.pool.root.1
[2025-10-11 22:13:25] -rw------- 1 boinc boinc   1126400 Oct 11 22:13 result.tar.gz
22:13:27 (2647644): run_atlas exited; CPU time 16300.921797
22:13:27 (2647644): called boinc_finish(0)

</stderr_txt>
]]>

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