Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
05:25:53 (800052): wrapper (7.7.26015): starting
05:25:53 (800052): wrapper: running run_atlas (--nthreads 11)
[2025-10-11 05:25:53] Arguments: --nthreads 11
[2025-10-11 05:25:53] Threads: 11
[2025-10-11 05:25:53] Checking for CVMFS
[2025-10-11 05:25:53] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 05:25:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 05:25:53] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 05:25:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 05:25:53] 2.13.2.0 2216807 127620 421076 151579 1 188 33418162 40960001 2820 16776704 30 255020210 99.714 199411279 21780 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-11 05:25:53] CVMFS is ok
[2025-10-11 05:25:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 05:25:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 05:25:53] Further information can be found at the LHC@home message board.
[2025-10-11 05:25:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 05:25:53] Checking for apptainer binary...
[2025-10-11 05:25:53] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 05:25:53] Running /usr/bin/apptainer --version
[2025-10-11 05:25:53] apptainer version 1.4.3-1.el9
[2025-10-11 05:25:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 05:25:53] c7-11-11.aglt2.org
[2025-10-11 05:25:53] apptainer works
[2025-10-11 05:25:53] Set ATHENA_PROC_NUMBER=11
[2025-10-11 05:25:53] Set ATHENA_CORE_NUMBER=11
[2025-10-11 05:25:53] Starting ATLAS job with PandaID=6837707110
[2025-10-11 05:25:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-11 06:10:22]  *** The last 200 lines of the pilot log: ***
[2025-10-11 06:10:22]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-11 06:10:22]  replicas=None
[2025-10-11 06:10:22]  scope=mc23_13p6TeV
[2025-10-11 06:10:22]  status=None
[2025-10-11 06:10:22]  status_code=0
[2025-10-11 06:10:22]  storage_token=
[2025-10-11 06:10:22]  surl=/tmp/boinchome/slots/4/PanDA_Pilot-6837707110/log.46676269._043375.job.log.tgz.1
[2025-10-11 06:10:22]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a4/16/log.46676269._043375.job.log.tgz.1
[2025-10-11 06:10:22]  workdir=None
[2025-10-11 06:10:22] ]
[2025-10-11 06:10:22] 2025-10-11 10:09:44,352 | INFO     | transferring file log.46676269._043375.job.log.tgz.1 from /tmp/boinchome/slots/4/PanDA_Pilot-6837707110/log.46676269._043375.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-11 06:10:22] 2025-10-11 10:09:44,352 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/4/PanDA_Pilot-6837707110/log.46676269._043375.job.log.tgz.1 /tmp/boinchome/slots/4/log.46676269._043375.job
[2025-10-11 06:10:22] 2025-10-11 10:09:44,369 | INFO     | adding to output.list: log.46676269._043375.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a4/16/log.46676269._043375.job.log.tg
[2025-10-11 06:10:22] 2025-10-11 10:09:44,370 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-11 06:10:22] 2025-10-11 10:09:44,370 | INFO     | summary of transferred files:
[2025-10-11 06:10:22] 2025-10-11 10:09:44,370 | INFO     |  -- lfn=log.46676269._043375.job.log.tgz.1, status_code=0, status=transferred
[2025-10-11 06:10:22] 2025-10-11 10:09:44,370 | INFO     | stage-out finished correctly
[2025-10-11 06:10:22] 2025-10-11 10:09:44,584 | INFO     | number of running child processes to parent process 810601: 1
[2025-10-11 06:10:22] 2025-10-11 10:09:44,584 | INFO     | maximum number of monitored processes: 6
[2025-10-11 06:10:22] 2025-10-11 10:09:44,719 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-11 06:10:22] 2025-10-11 10:09:45,424 | INFO     | time since job start (2624s) is within the limit (172800.0s)
[2025-10-11 06:10:22] 2025-10-11 10:09:47,087 | INFO     | monitor loop #197: job 0:6837707110 is in state 'finished'
[2025-10-11 06:10:22] 2025-10-11 10:09:47,087 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 06:10:22] 2025-10-11 10:09:47,430 | INFO     | time since job start (2626s) is within the limit (172800.0s)
[2025-10-11 06:10:22] 2025-10-11 10:09:47,785 | INFO     | job 6837707110 has state=finished
[2025-10-11 06:10:22] 2025-10-11 10:09:47,786 | INFO     | preparing for final server update for job 6837707110 in state='finished'
[2025-10-11 06:10:22] 2025-10-11 10:09:47,786 | INFO     | this job has now completed (state=finished)
[2025-10-11 06:10:22] 2025-10-11 10:09:47,786 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-11 06:10:22] 2025-10-11 10:09:47,786 | INFO     | log transfer has been attempted: DONE
[2025-10-11 06:10:22] 2025-10-11 10:09:47,786 | INFO     | job 6837707110 has finished - writing final server update
[2025-10-11 06:10:22] 2025-10-11 10:09:47,787 | INFO     | total number of processed events: 400 (read)
[2025-10-11 06:10:22] 2025-10-11 10:09:47,787 | INFO     | executing command: lscpu
[2025-10-11 06:10:22] 2025-10-11 10:09:47,840 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-11 06:10:22] 2025-10-11 10:09:49,436 | INFO     | time since job start (2628s) is within the limit (172800.0s)
[2025-10-11 06:10:22] 2025-10-11 10:09:49,590 | INFO     | monitor loop #198: job 0:6837707110 is in state 'finished'
[2025-10-11 06:10:22] 2025-10-11 10:09:49,590 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 06:10:22] 2025-10-11 10:09:50,846 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-11 06:10:22] 2025-10-11 10:09:50,862 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 3086.7778281249994
[2025-10-11 06:10:22] 2025-10-11 10:09:50,872 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6837707110/memory_monitor_summary.json (trf name=prmon)
[2025-10-11 06:10:22] 2025-10-11 10:09:50,873 | INFO     | extracted standard info from prmon json
[2025-10-11 06:10:22] 2025-10-11 10:09:50,873 | INFO     | extracted standard memory fields from prmon json
[2025-10-11 06:10:22] 2025-10-11 10:09:50,873 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-11 06:10:22] 2025-10-11 10:09:50,873 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-11 06:10:22] 2025-10-11 10:09:50,873 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-11 06:10:22] 2025-10-11 10:09:50,875 | INFO     | fitting pss+swap vs Time
[2025-10-11 06:10:22] 2025-10-11 10:09:50,875 | INFO     | sum of square deviations: 14456085.0
[2025-10-11 06:10:22] 2025-10-11 10:09:50,875 | INFO     | sum of deviations: 355552774.0000001
[2025-10-11 06:10:22] 2025-10-11 10:09:50,875 | INFO     | mean x: 1760176155.5
[2025-10-11 06:10:22] 2025-10-11 10:09:50,875 | INFO     | mean y: 2424790.4444444445
[2025-10-11 06:10:22] 2025-10-11 10:09:50,875 | INFO     | -- intersect: -43289760805.910355
[2025-10-11 06:10:22] 2025-10-11 10:09:50,875 | INFO     | intersect: -43289760805.910355
[2025-10-11 06:10:22] 2025-10-11 10:09:50,875 | INFO     | chi2: 0.0022865988236283117
[2025-10-11 06:10:22] 2025-10-11 10:09:50,876 | INFO     | -- intersect: -43289760805.910355
[2025-10-11 06:10:22] 2025-10-11 10:09:50,876 | INFO     | current memory leak: 24.60 B/s (using 36 data points, chi2=0.00)
[2025-10-11 06:10:22] 2025-10-11 10:09:50,876 | INFO     | could have reported an average CPU frequency of 3101 MHz (5 samples)
[2025-10-11 06:10:22] 2025-10-11 10:09:50,876 | INFO     | ..............................
[2025-10-11 06:10:22] 2025-10-11 10:09:50,876 | INFO     | . Timing measurements:
[2025-10-11 06:10:22] 2025-10-11 10:09:50,876 | INFO     | . get job = 0 s
[2025-10-11 06:10:22] 2025-10-11 10:09:50,876 | INFO     | . initial setup = 2 s
[2025-10-11 06:10:22] 2025-10-11 10:09:50,876 | INFO     | . payload setup = 3 s
[2025-10-11 06:10:22] 2025-10-11 10:09:50,876 | INFO     | . stage-in = 0 s
[2025-10-11 06:10:22] 2025-10-11 10:09:50,876 | INFO     | . payload execution = 2600 s
[2025-10-11 06:10:22] 2025-10-11 10:09:50,877 | INFO     | . stage-out = 0 s
[2025-10-11 06:10:22] 2025-10-11 10:09:50,877 | INFO     | . log creation = 0 s
[2025-10-11 06:10:22] 2025-10-11 10:09:50,877 | INFO     | ..............................
[2025-10-11 06:10:22] 2025-10-11 10:09:50,957 | INFO     | 
[2025-10-11 06:10:22] 2025-10-11 10:09:50,957 | INFO     | job summary report
[2025-10-11 06:10:22] 2025-10-11 10:09:50,957 | INFO     | --------------------------------------------------
[2025-10-11 06:10:22] 2025-10-11 10:09:50,957 | INFO     | PanDA job id: 6837707110
[2025-10-11 06:10:22] 2025-10-11 10:09:50,958 | INFO     | task id: 46676269
[2025-10-11 06:10:22] 2025-10-11 10:09:50,958 | INFO     | errors: (none)
[2025-10-11 06:10:22] 2025-10-11 10:09:50,958 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-11 06:10:22] 2025-10-11 10:09:50,958 | INFO     | pilot state: finished 
[2025-10-11 06:10:22] 2025-10-11 10:09:50,958 | INFO     | transexitcode: 0
[2025-10-11 06:10:22] 2025-10-11 10:09:50,958 | INFO     | exeerrorcode: 0
[2025-10-11 06:10:22] 2025-10-11 10:09:50,958 | INFO     | exeerrordiag: 
[2025-10-11 06:10:22] 2025-10-11 10:09:50,958 | INFO     | exitcode: 0
[2025-10-11 06:10:22] 2025-10-11 10:09:50,958 | INFO     | exitmsg: OK
[2025-10-11 06:10:22] 2025-10-11 10:09:50,958 | INFO     | cpuconsumptiontime: 25970 s
[2025-10-11 06:10:22] 2025-10-11 10:09:50,958 | INFO     | nevents: 400
[2025-10-11 06:10:22] 2025-10-11 10:09:50,958 | INFO     | neventsw: 0
[2025-10-11 06:10:22] 2025-10-11 10:09:50,958 | INFO     | pid: 810601
[2025-10-11 06:10:22] 2025-10-11 10:09:50,958 | INFO     | pgrp: 810601
[2025-10-11 06:10:22] 2025-10-11 10:09:50,958 | INFO     | corecount: 11
[2025-10-11 06:10:22] 2025-10-11 10:09:50,958 | INFO     | event service: False
[2025-10-11 06:10:22] 2025-10-11 10:09:50,958 | INFO     | sizes: {0: 2348857, 3: 2349119, 11: 2349147, 2608: 2383466, 2609: 2383466, 2615: 2383692}
[2025-10-11 06:10:22] 2025-10-11 10:09:50,959 | INFO     | --------------------------------------------------
[2025-10-11 06:10:22] 2025-10-11 10:09:50,959 | INFO     | 
[2025-10-11 06:10:22] 2025-10-11 10:09:50,959 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2025-10-11 06:10:22] 2025-10-11 10:09:50,976 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-11 06:10:22] 2025-10-11 10:09:50,977 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-11 06:10:22] 2025-10-11 10:09:50,977 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-11 06:10:22] 2025-10-11 10:09:50,977 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-11 06:10:22] 2025-10-11 10:09:50,977 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-11 06:10:22] 2025-10-11 10:09:50,977 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-11 06:10:22] 2025-10-11 10:09:50,977 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-11 06:10:22] 2025-10-11 10:09:50,977 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-11 06:10:22] 2025-10-11 10:09:50,977 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-11 06:10:22] 2025-10-11 10:09:50,977 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-11 06:10:22] 2025-10-11 10:09:50,977 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-11 06:10:22] 2025-10-11 10:09:50,977 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-11 06:10:22] 2025-10-11 10:09:50,977 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-11 06:10:22] 2025-10-11 10:09:50,977 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-11 06:10:22] 2025-10-11 10:09:50,977 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-11 06:10:22] 2025-10-11 10:09:50,977 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-11 06:10:22] 2025-10-11 10:09:50,977 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-11 06:10:22] 2025-10-11 10:09:50,977 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-11 06:10:22] 2025-10-11 10:09:50,977 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-11 06:10:22] 2025-10-11 10:09:50,977 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-11 06:10:22] 2025-10-11 10:09:50,978 | INFO     | job 6837707110 has completed (purged errors)
[2025-10-11 06:10:22] 2025-10-11 10:09:50,978 | INFO     | overall cleanup function is called
[2025-10-11 06:10:22] 2025-10-11 10:09:51,985 | INFO     | --- collectZombieJob: --- 10, [810601]
[2025-10-11 06:10:22] 2025-10-11 10:09:51,985 | INFO     | zombie collector waiting for pid 810601
[2025-10-11 06:10:22] 2025-10-11 10:09:51,986 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-11 06:10:22] 2025-10-11 10:09:51,986 | INFO     | collected zombie processes
[2025-10-11 06:10:22] 2025-10-11 10:09:51,986 | INFO     | will attempt to kill all subprocesses of pid=810601
[2025-10-11 06:10:22] 2025-10-11 10:09:52,174 | INFO     | process IDs to be killed: [810601] (in reverse order)
[2025-10-11 06:10:22] 2025-10-11 10:09:52,246 | WARNING  | found no corresponding commands to process id(s)
[2025-10-11 06:10:22] 2025-10-11 10:09:52,246 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-11 06:10:22] 2025-10-11 10:09:52,253 | INFO     | did not find any defunct processes belonging to 810601
[2025-10-11 06:10:22] 2025-10-11 10:09:52,259 | INFO     | did not find any defunct processes belonging to 810601
[2025-10-11 06:10:22] 2025-10-11 10:09:52,259 | INFO     | ready for new job
[2025-10-11 06:10:22] 2025-10-11 10:09:52,259 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-11 06:10:22] 2025-10-11 10:09:52,260 | INFO     | ***************************************
[2025-10-11 06:10:22] 2025-10-11 10:09:52,260 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-11 06:10:22] 2025-10-11 10:09:52,261 | INFO     | ***************************************
[2025-10-11 06:10:22] 2025-10-11 10:09:52,261 | INFO     | 
[2025-10-11 06:10:22] 2025-10-11 10:09:52,275 | INFO     | architecture information:
[2025-10-11 06:10:22] 2025-10-11 10:09:52,275 | INFO     | executing command: cat /etc/os-release
[2025-10-11 06:10:22] 2025-10-11 10:09:52,286 | INFO     | cat /etc/os-release:
[2025-10-11 06:10:22] NAME="CentOS Linux"
[2025-10-11 06:10:22] VERSION="7 (Core)"
[2025-10-11 06:10:22] ID="centos"
[2025-10-11 06:10:22] ID_LIKE="rhel fedora"
[2025-10-11 06:10:22] VERSION_ID="7"
[2025-10-11 06:10:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-11 06:10:22] ANSI_COLOR="0;31"
[2025-10-11 06:10:22] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-11 06:10:22] HOME_URL="https://www.centos.org/"
[2025-10-11 06:10:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-11 06:10:22] 
[2025-10-11 06:10:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-11 06:10:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-11 06:10:22] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-11 06:10:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-11 06:10:22] 
[2025-10-11 06:10:22] 2025-10-11 10:09:52,286 | INFO     | ***************************************
[2025-10-11 06:10:22] 2025-10-11 10:09:52,788 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-10-11 06:10:22] 2025-10-11 10:09:52,798 | INFO     | sufficient remaining disk space (83638616064 B)
[2025-10-11 06:10:22] 2025-10-11 10:09:52,798 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-11 06:10:22] 2025-10-11 10:09:52,798 | INFO     | current server update state: UPDATING_FINAL
[2025-10-11 06:10:22] 2025-10-11 10:09:52,798 | INFO     | update_server=False
[2025-10-11 06:10:22] 2025-10-11 10:09:52,798 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-11 06:10:22] 2025-10-11 10:09:52,798 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-11 06:10:22] 2025-10-11 10:09:52,799 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-11 06:10:22] 2025-10-11 10:09:52,862 | INFO     | all data control threads have been joined
[2025-10-11 06:10:22] 2025-10-11 10:09:52,899 | INFO     | all payload control threads have been joined
[2025-10-11 06:10:22] 2025-10-11 10:09:53,098 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-11 06:10:22] 2025-10-11 10:09:53,099 | INFO     | aborting loop
[2025-10-11 06:10:22] 2025-10-11 10:09:53,803 | INFO     | [job] retrieve thread has finished
[2025-10-11 06:10:22] 2025-10-11 10:09:53,804 | INFO     | [job] queue monitor thread has finished
[2025-10-11 06:10:22] 2025-10-11 10:09:53,859 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-11 06:10:22] 2025-10-11 10:09:53,868 | INFO     | [data] control thread has finished
[2025-10-11 06:10:22] 2025-10-11 10:09:53,904 | INFO     | [payload] control thread has finished
[2025-10-11 06:10:22] 2025-10-11 10:09:54,104 | INFO     | [job] job monitor thread has finished
[2025-10-11 06:10:22] 2025-10-11 10:09:54,138 | INFO     | [job] validate thread has finished
[2025-10-11 06:10:22] 2025-10-11 10:09:54,293 | INFO     | [job] create_data_payload thread has finished
[2025-10-11 06:10:22] 2025-10-11 10:09:54,297 | INFO     | [payload] validate_post thread has finished
[2025-10-11 06:10:22] 2025-10-11 10:09:54,342 | INFO     | [payload] validate_pre thread has finished
[2025-10-11 06:10:22] 2025-10-11 10:09:54,368 | INFO     | all job control threads have been joined
[2025-10-11 06:10:22] 2025-10-11 10:09:54,589 | INFO     | [data] copytool_in thread has finished
[2025-10-11 06:10:22] 2025-10-11 10:09:54,805 | INFO     | [data] copytool_out thread has finished
[2025-10-11 06:10:22] 2025-10-11 10:09:54,847 | INFO     | [payload] failed_post thread has finished
[2025-10-11 06:10:22] 2025-10-11 10:09:55,145 | INFO     | [payload] execute_payloads thread has finished
[2025-10-11 06:10:22] 2025-10-11 10:09:55,310 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-11 06:10:22] 2025-10-11 10:09:55,373 | INFO     | [job] control thread has finished
[2025-10-11 06:10:22] 2025-10-11 10:09:59,316 | INFO     | [data] queue_monitor thread has finished
[2025-10-11 06:10:22] 2025-10-11 10:10:05,007 | INFO     | [monitor] cgroup control has ended
[2025-10-11 06:10:22] 2025-10-11 10:10:07,052 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139645844203328)>', '<ExcThread(monitor, started 139645224482560)>']
[2025-10-11 06:10:22] 2025-10-11 10:10:12,064 | INFO     | all workflow threads have been joined
[2025-10-11 06:10:22] 2025-10-11 10:10:12,064 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-11 06:10:22] 2025-10-11 10:10:12,065 | INFO     | traces error code: 0
[2025-10-11 06:10:22] 2025-10-11 10:10:12,065 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-11 06:10:22] 2025-10-11 10:10:22,731 | INFO     | PID=803738 has CPU usage=4.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-11 06:10:22] 2025-10-11 10:10:22,731 | INFO     | .. there are 5 such processes running
[2025-10-11 06:10:22] 2025-10-11 10:10:22,731 | INFO     | found 0 job(s) in 20 queues
[2025-10-11 06:10:22] 2025-10-11 10:10:22,731 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-11 06:10:22] 2025-10-11 10:10:22,731 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-11 06:10:22] 2025-10-11 10:10:22,731 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-11 06:10:22] 2025-10-11 10:10:22,731 | INFO     | [monitor] control thread has ended
[2025-10-11 06:10:22] 2025-10-11 10:10:22,863 [wrapper] ==== pilot stdout END ====
[2025-10-11 06:10:22] 2025-10-11 10:10:22,866 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-11 06:10:22] 2025-10-11 10:10:22,868 [wrapper] pilotpid: 803738
[2025-10-11 06:10:22] 2025-10-11 10:10:22,870 [wrapper] Pilot exit status: 0
[2025-10-11 06:10:22] 2025-10-11 10:10:22,879 [wrapper] pandaids: 6837707110
[2025-10-11 06:10:22] 2025-10-11 10:10:22,928 [wrapper] cleanup supervisor_pilot  897884 803739
[2025-10-11 06:10:22] 2025-10-11 10:10:22,931 [wrapper] Test setup, not cleaning
[2025-10-11 06:10:22] 2025-10-11 10:10:22,933 [wrapper] apfmon messages muted
[2025-10-11 06:10:22] 2025-10-11 10:10:22,935 [wrapper] ==== wrapper stdout END ====
[2025-10-11 06:10:22] 2025-10-11 10:10:22,938 [wrapper] ==== wrapper stderr END ====
[2025-10-11 06:10:22]  *** Error codes and diagnostics ***
[2025-10-11 06:10:22]     "exeErrorCode": 0,
[2025-10-11 06:10:22]     "exeErrorDiag": "",
[2025-10-11 06:10:22]     "pilotErrorCode": 0,
[2025-10-11 06:10:22]     "pilotErrorDiag": "",
[2025-10-11 06:10:22]  *** Listing of results directory ***
[2025-10-11 06:10:22] total 410672
[2025-10-11 06:10:22] -rw-r--r--. 1 boincer umatlas    557409 Oct 10 14:18 pilot3.tar.gz
[2025-10-11 06:10:22] -rwx------. 1 boincer umatlas     36292 Oct 10 14:43 runpilot2-wrapper.sh
[2025-10-11 06:10:22] -rw-r--r--. 1 boincer umatlas      5112 Oct 10 14:43 queuedata.json
[2025-10-11 06:10:22] -rw-r--r--. 1 boincer umatlas       100 Oct 11 05:25 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-11 06:10:22] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 11 05:25 run_atlas
[2025-10-11 06:10:22] -rw-r--r--. 1 boincer umatlas       105 Oct 11 05:25 job.xml
[2025-10-11 06:10:22] -rw-r--r--. 2 boincer umatlas 221673488 Oct 11 05:25 EVNT.46676267._001756.pool.root.1
[2025-10-11 06:10:22] -rw-r--r--. 2 boincer umatlas     15120 Oct 11 05:25 start_atlas.sh
[2025-10-11 06:10:22] drwxrwx--x. 2 boincer umatlas      4096 Oct 11 05:25 shared
[2025-10-11 06:10:22] -rw-r--r--. 2 boincer umatlas    569677 Oct 11 05:25 input.tar.gz
[2025-10-11 06:10:22] -rw-r--r--. 1 boincer umatlas         0 Oct 11 05:25 boinc_lockfile
[2025-10-11 06:10:22] -rw-r--r--. 1 boincer umatlas      2550 Oct 11 05:25 pandaJob.out
[2025-10-11 06:10:22] -rw-------. 1 boincer umatlas    975525 Oct 11 05:25 agis_schedconf.cvmfs.json
[2025-10-11 06:10:22] -rw-------. 1 boincer umatlas   1560580 Oct 11 05:26 agis_ddmendpoints.agis.ALL.json
[2025-10-11 06:10:22] drwx------. 5 boincer umatlas      4096 Oct 11 05:26 pilot3
[2025-10-11 06:10:22] -rw-r--r--. 1 boincer umatlas      6899 Oct 11 06:04 init_data.xml
[2025-10-11 06:10:22] -rw-------. 1 boincer umatlas 193437973 Oct 11 06:09 HITS.46676269._043375.pool.root.1
[2025-10-11 06:10:22] -rw-r--r--. 1 boincer umatlas       529 Oct 11 06:09 boinc_task_state.xml
[2025-10-11 06:10:22] -rw-------. 1 boincer umatlas      1023 Oct 11 06:09 memory_monitor_summary.json
[2025-10-11 06:10:23] -rw-------. 1 boincer umatlas    345108 Oct 11 06:09 log.46676269._043375.job.log.tgz.1
[2025-10-11 06:10:23] -rw-------. 1 boincer umatlas        95 Oct 11 06:09 pilot_heartbeat.json
[2025-10-11 06:10:23] -rw-------. 1 boincer umatlas      7764 Oct 11 06:09 heartbeat.json
[2025-10-11 06:10:23] -rw-r--r--. 1 boincer umatlas      8192 Oct 11 06:10 boinc_mmap_file
[2025-10-11 06:10:23] -rw-r--r--. 1 boincer umatlas        27 Oct 11 06:10 wrapper_checkpoint.txt
[2025-10-11 06:10:23] -rw-------. 1 boincer umatlas       821 Oct 11 06:10 pilotlog.txt
[2025-10-11 06:10:23] -rw-------. 1 boincer umatlas    410865 Oct 11 06:10 log.46676269._043375.job.log.1
[2025-10-11 06:10:23] -rw-------. 1 boincer umatlas       357 Oct 11 06:10 output.list
[2025-10-11 06:10:23] -rw-r--r--. 1 boincer umatlas       620 Oct 11 06:10 runtime_log
[2025-10-11 06:10:23] -rw-------. 1 boincer umatlas    778240 Oct 11 06:10 result.tar.gz
[2025-10-11 06:10:23] -rw-r--r--. 1 boincer umatlas      8705 Oct 11 06:10 runtime_log.err
[2025-10-11 06:10:23] -rw-------. 1 boincer umatlas       651 Oct 11 06:10 QrTKDmxGXR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmN8dNDmQ7R2Uo.diag
[2025-10-11 06:10:23] -rw-r--r--. 1 boincer umatlas     21837 Oct 11 06:10 stderr.txt
[2025-10-11 06:10:23] HITS file was successfully produced:
[2025-10-11 06:10:23] -rw-------. 1 boincer umatlas 193437973 Oct 11 06:09 shared/HITS.pool.root.1
[2025-10-11 06:10:23]  *** Contents of shared directory: ***
[2025-10-11 06:10:23] total 406728
[2025-10-11 06:10:23] -rw-r--r--. 2 boincer umatlas 221673488 Oct 11 05:25 ATLAS.root_0
[2025-10-11 06:10:23] -rw-r--r--. 2 boincer umatlas     15120 Oct 11 05:25 start_atlas.sh
[2025-10-11 06:10:23] -rw-r--r--. 2 boincer umatlas    569677 Oct 11 05:25 input.tar.gz
[2025-10-11 06:10:23] -rw-------. 1 boincer umatlas 193437973 Oct 11 06:09 HITS.pool.root.1
[2025-10-11 06:10:23] -rw-------. 1 boincer umatlas    778240 Oct 11 06:10 result.tar.gz
06:10:24 (800052): run_atlas exited; CPU time 25979.634078
06:10:24 (800052): called boinc_finish(0)

</stderr_txt>
]]>

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