Stderr output

<core_client_version>8.2.5</core_client_version>
<![CDATA[
<stderr_txt>
2025-10-11 06:27:36 (23556): vboxwrapper version 26210
2025-10-11 06:27:36 (23556): BOINC client version: 8.2.5
2025-10-11 06:27:37 (23556): Detected: VirtualBox VboxManage Interface (Version: 7.2.2)
2025-10-11 06:27:37 (23556): Successfully copied 'init_data.xml' to the shared directory.
2025-10-11 06:27:37 (23556): Create VM. (boinc_921f0464c2be59f8, slot#1)
2025-10-11 06:27:38 (23556): Setting Memory Size for VM. (4300MB)
2025-10-11 06:27:38 (23556): Setting CPU Count for VM. (3)
2025-10-11 06:27:38 (23556): Setting Chipset Options for VM.
2025-10-11 06:27:39 (23556): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-10-11 06:27:39 (23556): Setting Boot Options for VM.
2025-10-11 06:27:39 (23556): Setting Network Configuration for NAT. (Driver: virtio)
2025-10-11 06:27:40 (23556): Enabling VM Network Access.
2025-10-11 06:27:40 (23556): Disabling USB Support for VM.
2025-10-11 06:27:40 (23556): Disabling COM Port Support for VM.
2025-10-11 06:27:40 (23556): Disabling LPT Port Support for VM.
2025-10-11 06:27:41 (23556): Disabling Audio Support for VM.
2025-10-11 06:27:41 (23556): Disabling Clipboard Support for VM.
2025-10-11 06:27:41 (23556): Disabling Drag and Drop Support for VM.
2025-10-11 06:27:41 (23556): Adding storage controller(s) to VM.
2025-10-11 06:27:42 (23556): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-10-11 06:27:42 (23556): Adding VirtualBox Guest Additions to VM.
2025-10-11 06:27:42 (23556): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-10-11 06:27:43 (23556): forwarding host port 50606 to guest port 80
2025-10-11 06:27:43 (23556): Enabling remote desktop for VM.
2025-10-11 06:27:43 (23556): Enabling shared directory for VM.
2025-10-11 06:27:44 (23556): Starting VM using VBoxManage interface. (boinc_921f0464c2be59f8, slot#1)
2025-10-11 06:27:49 (23556): Successfully started VM. (PID = '10128')
2025-10-11 06:27:49 (23556): Reporting VM Process ID to BOINC.
2025-10-11 06:27:49 (23556): Guest Log: BIOS: VirtualBox 7.2.2
2025-10-11 06:27:49 (23556): Guest Log: CPUID EDX: 0x178bfbff
2025-10-11 06:27:49 (23556): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-10-11 06:27:49 (23556): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-10-11 06:27:49 (23556): VM state change detected. (old = 'poweredoff', new = 'running')
2025-10-11 06:27:49 (23556): Detected: Web Application Enabled (http://localhost:50606)
2025-10-11 06:27:49 (23556): Detected: Remote Desktop Enabled (localhost:50607)
2025-10-11 06:27:49 (23556): Preference change detected
2025-10-11 06:27:49 (23556): Setting CPU throttle for VM. (100%)
2025-10-11 06:27:49 (23556): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-10-11 06:27:51 (23556): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-10-11 06:27:51 (23556): Guest Log: BIOS: Booting from Hard Disk...
2025-10-11 06:27:54 (23556): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-10-11 06:27:54 (23556): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-10-11 06:27:54 (23556): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-10-11 06:27:54 (23556): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-10-11 06:27:54 (23556): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-10-11 06:27:54 (23556): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-10-11 06:27:54 (23556): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-10-11 06:27:54 (23556): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-10-11 06:27:54 (23556): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-10-11 06:27:54 (23556): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-10-11 06:27:54 (23556): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-10-11 06:27:54 (23556): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-10-11 06:27:54 (23556): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-10-11 06:27:54 (23556): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-10-11 06:27:54 (23556): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-10-11 06:27:54 (23556): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-10-11 06:27:54 (23556): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-10-11 06:27:54 (23556): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-10-11 06:27:54 (23556): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-10-11 06:27:54 (23556): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-10-11 06:27:54 (23556): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-10-11 06:27:54 (23556): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-10-11 06:27:54 (23556): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-10-11 06:27:54 (23556): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-10-11 06:27:54 (23556): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-10-11 06:27:54 (23556): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-10-11 06:27:54 (23556): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-10-11 06:27:54 (23556): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-10-11 06:27:54 (23556): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-10-11 06:27:54 (23556): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-10-11 06:27:54 (23556): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-10-11 06:27:54 (23556): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-10-11 06:28:24 (23556): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-10-11 06:28:24 (23556): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-10-11 06:28:28 (23556): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-10-11 06:28:28 (23556): Guest Log: 00:00:00.000070 main     Log opened 2025-10-11T06:28:26.119798000Z
2025-10-11 06:28:28 (23556): Guest Log: 00:00:00.000142 main     OS Product: Linux
2025-10-11 06:28:28 (23556): Guest Log: 00:00:00.000165 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-10-11 06:28:28 (23556): Guest Log: 00:00:00.000182 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-10-11 06:28:28 (23556): Guest Log: 00:00:00.000199 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-10-11 06:28:28 (23556): Guest Log: 00:00:00.000199 main     Process ID: 1291
2025-10-11 06:28:28 (23556): Guest Log: 00:00:00.000200 main     Package type: LINUX_64BITS_GENERIC
2025-10-11 06:28:28 (23556): Guest Log: 00:00:00.000821 main     5.2.32 r132073 started. Verbose level = 0
2025-10-11 06:28:28 (23556): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-10-11 06:28:28 (23556): Guest Log: [INFO] Mounting shared directory
2025-10-11 06:28:28 (23556): Guest Log: [INFO] Checking for init_data.xml
2025-10-11 06:28:29 (23556): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-10-11 06:28:29 (23556): Guest Log: [INFO] Detected branch: prod
2025-10-11 06:28:30 (23556): Guest Log: This is the prod version of the ATLAS job wrapper
2025-10-11 06:28:30 (23556): Guest Log: Copying input files
2025-10-11 06:28:30 (23556): Guest Log: Copied input files into RunAtlas.
2025-10-11 06:28:30 (23556): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-10-11 06:28:30 (23556): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-10-11 06:28:30 (23556): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-10-11 06:28:30 (23556): Guest Log: Further information can be found at the LHC@home message board.
2025-10-11 06:28:38 (23556): Guest Log: 00:00:10.001798 timesync vgsvcTimeSyncWorker: Radical guest time change: 14 383 307 713 000ns (GuestNow=1 760 178 489 429 093 000 ns GuestLast=1 760 164 106 121 380 000 ns fSetTimeLastLoop=true )
2025-10-11 06:28:38 (23556): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-10-11 06:28:38 (23556): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-10-11 06:28:38 (23556): Guest Log: 2.6.3.0 1568 0 30188 151581 3 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-10-11 06:28:39 (23556): Guest Log: copied the webapp to /var/www
2025-10-11 06:28:39 (23556): Guest Log: ATHENA_PROC_NUMBER=3
2025-10-11 06:28:39 (23556): Guest Log: ATHENA_CORE_NUMBER=3
2025-10-11 06:28:39 (23556): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-10-11 06:28:39 (23556): Guest Log:  *** Starting ATLAS job. (PandaID=6827432377 taskID=46376905) ***
2025-10-11 08:07:51 (23556): Status Report: Elapsed Time: '6000.000000'
2025-10-11 08:07:51 (23556): Status Report: CPU Time: '17258.890625'
2025-10-11 08:39:18 (23556): Guest Log:  *** Job finished ***
2025-10-11 08:39:18 (23556): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-10-11 08:39:18 (23556): Guest Log: 2025-10-11 12:38:46,064 | INFO     | PID=5929 has CPU usage=0.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE -z -t
2025-10-11 08:39:18 (23556): Guest Log: 2025-10-11 12:38:46,065 | INFO     | found 0 job(s) in 20 queues
2025-10-11 08:39:18 (23556): Guest Log: 2025-10-11 12:38:46,065 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-10-11 08:39:18 (23556): Guest Log: 2025-10-11 12:38:46,065 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-10-11 08:39:18 (23556): Guest Log: 2025-10-11 12:38:46,065 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-10-11 08:39:18 (23556): Guest Log: 2025-10-11 12:38:46,065 | INFO     | [monitor] control thread has ended
2025-10-11 08:39:18 (23556): Guest Log: 2025-10-11 12:38:48,481 | INFO     | all workflow threads have been joined
2025-10-11 08:39:18 (23556): Guest Log: 2025-10-11 12:38:48,481 | INFO     | end of generic workflow (traces error code: 0)
2025-10-11 08:39:18 (23556): Guest Log: 2025-10-11 12:38:48,481 | INFO     | traces error code: 0
2025-10-11 08:39:18 (23556): Guest Log: 2025-10-11 12:38:48,481 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-10-11 08:39:18 (23556): Guest Log: 2025-10-11 12:38:48,538 [wrapper] ==== pilot stdout END ====
2025-10-11 08:39:18 (23556): Guest Log: 2025-10-11 12:38:48,541 [wrapper] ==== wrapper stdout RESUME ====
2025-10-11 08:39:18 (23556): Guest Log: 2025-10-11 12:38:48,543 [wrapper] pilotpid: 5929
2025-10-11 08:39:18 (23556): Guest Log: 2025-10-11 12:38:48,546 [wrapper] Pilot exit status: 0
2025-10-11 08:39:18 (23556): Guest Log: 2025-10-11 12:38:48,593 [wrapper] pandaids: 6827432377
2025-10-11 08:39:18 (23556): Guest Log: 2025-10-11 12:38:48,609 [wrapper] cleanup supervisor_pilot  4854 5930
2025-10-11 08:39:18 (23556): Guest Log: 2025-10-11 12:38:48,612 [wrapper] Test setup, not cleaning
2025-10-11 08:39:18 (23556): Guest Log: 2025-10-11 12:38:48,615 [wrapper] apfmon messages muted
2025-10-11 08:39:18 (23556): Guest Log: 2025-10-11 12:38:48,617 [wrapper] ==== wrapper stdout END ====
2025-10-11 08:39:18 (23556): Guest Log: 2025-10-11 12:38:48,620 [wrapper] ==== wrapper stderr END ====
2025-10-11 08:39:18 (23556): Guest Log:  *** Error codes and diagnostics ***
2025-10-11 08:39:18 (23556): Guest Log:     "exeErrorCode": 0,
2025-10-11 08:39:18 (23556): Guest Log:     "exeErrorDiag": "",
2025-10-11 08:39:18 (23556): Guest Log:     "pilotErrorCode": 0,
2025-10-11 08:39:18 (23556): Guest Log:     "pilotErrorDiag": "",
2025-10-11 08:39:18 (23556): Guest Log:  *** Listing of results directory ***
2025-10-11 08:39:18 (23556): Guest Log: total 180380
2025-10-11 08:39:18 (23556): Guest Log: -rw-r--r--. 1 atlas atlas    552446 Oct  2 22:30 pilot3.tar.gz
2025-10-11 08:39:18 (23556): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Oct  2 22:32 queuedata.json
2025-10-11 08:39:18 (23556): Guest Log: -rwx------. 1 atlas atlas     36292 Oct  2 22:33 runpilot2-wrapper.sh
2025-10-11 08:39:18 (23556): Guest Log: -rwxr-xr-x. 1 atlas atlas      9027 Oct 11 10:28 init_data.xml
2025-10-11 08:39:18 (23556): Guest Log: -rwxr-xr-x. 1 atlas atlas    565598 Oct 11 10:28 input.tar.gz
2025-10-11 08:39:18 (23556): Guest Log: -rwxr-xr-x. 1 atlas atlas     15120 Oct 11 10:28 start_atlas.sh
2025-10-11 08:39:18 (23556): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Oct 11 10:28 EVNT.46376901._001011.pool.root.1 -> /data/./ATLAS.root_0
2025-10-11 08:39:18 (23556): Guest Log: -rw-r--r--. 1 atlas atlas      2519 Oct 11 10:28 pandaJob.out
2025-10-11 08:39:18 (23556): Guest Log: -rw-------. 1 atlas atlas    975517 Oct 11 10:28 agis_schedconf.cvmfs.json
2025-10-11 08:39:18 (23556): Guest Log: -rw-------. 1 atlas atlas   1560580 Oct 11 10:28 agis_ddmendpoints.agis.ALL.json
2025-10-11 08:39:18 (23556): Guest Log: drwx------. 4 atlas atlas      4096 Oct 11 10:28 pilot3
2025-10-11 08:39:18 (23556): Guest Log: -rw-------. 1 atlas atlas 178152021 Oct 11 12:37 HITS.46376905._031111.pool.root.1
2025-10-11 08:39:18 (23556): Guest Log: -rw-------. 1 atlas atlas      1024 Oct 11 12:38 memory_monitor_summary.json
2025-10-11 08:39:18 (23556): Guest Log: -rw-------. 1 atlas atlas    287371 Oct 11 12:38 log.46376905._031111.job.log.tgz.1
2025-10-11 08:39:18 (23556): Guest Log: -rw-------. 1 atlas atlas      7781 Oct 11 12:38 heartbeat.json
2025-10-11 08:39:18 (23556): Guest Log: -rw-------. 1 atlas atlas        95 Oct 11 12:38 pilot_heartbeat.json
2025-10-11 08:39:18 (23556): Guest Log: -rw-------. 1 atlas atlas      4805 Oct 11 12:38 pilotlog.txt
2025-10-11 08:39:18 (23556): Guest Log: -rw-------. 1 atlas atlas   1079546 Oct 11 12:38 log.46376905._031111.job.log.1
2025-10-11 08:39:18 (23556): Guest Log: -rw-------. 1 atlas atlas       357 Oct 11 12:38 output.list
2025-10-11 08:39:18 (23556): Guest Log: -rw-r--r--. 1 atlas atlas       620 Oct 11 12:38 runtime_log
2025-10-11 08:39:18 (23556): Guest Log: -rw-------. 1 atlas atlas   1382400 Oct 11 12:38 result.tar.gz
2025-10-11 08:39:18 (23556): Guest Log: -rw-r--r--. 1 atlas atlas      8636 Oct 11 12:38 runtime_log.err
2025-10-11 08:39:18 (23556): Guest Log: -rw-------. 1 atlas atlas       652 Oct 11 12:38 8CCMDms2gO8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmJqFNDmgD87Xo.diag
2025-10-11 08:39:18 (23556): Guest Log: Looking for outputfile HITS.46376905._031111.pool.root.1
2025-10-11 08:39:18 (23556): Guest Log: HITS file was successfully produced
2025-10-11 08:39:18 (23556): Guest Log: -rw-------. 1 atlas atlas 178152021 Oct 11 12:37 /home/atlas/RunAtlas/HITS.46376905._031111.pool.root.1
2025-10-11 08:39:18 (23556): Guest Log: Successfully finished the ATLAS job!
2025-10-11 08:39:18 (23556): Guest Log: Copying the results back to the shared directory!
2025-10-11 08:39:18 (23556): Guest Log:  *** Contents of shared directory: ***
2025-10-11 08:39:18 (23556): Guest Log: total 388000
2025-10-11 08:39:18 (23556): Guest Log: -rwxrwxrwx. 1 root root 217172063 Oct 11 10:27 ATLAS.root_0
2025-10-11 08:39:18 (23556): Guest Log: -rwxrwxrwx. 1 root root 178152021 Oct 11  2025 HITS.pool.root.1
2025-10-11 08:39:18 (23556): Guest Log: -rwxrwxrwx. 1 root root      9027 Oct 11 10:27 init_data.xml
2025-10-11 08:39:18 (23556): Guest Log: -rwxrwxrwx. 1 root root    565598 Oct 11 08:46 input.tar.gz
2025-10-11 08:39:18 (23556): Guest Log: -rwxrwxrwx. 1 root root   1382400 Oct 11  2025 result.tar.gz
2025-10-11 08:39:18 (23556): Guest Log: -rwxrwxrwx. 1 root root     15120 Oct 11 08:46 start_atlas.sh
2025-10-11 08:39:18 (23556): Guest Log:  *** Success! Shutting down the machine. ***
2025-10-11 08:39:18 (23556): VM Completion File Detected.
2025-10-11 08:39:18 (23556): Powering off VM.
2025-10-11 08:39:18 (23556): Successfully stopped VM.
2025-10-11 08:39:18 (23556): Deregistering VM. (boinc_921f0464c2be59f8, slot#1)
2025-10-11 08:39:19 (23556): Removing network bandwidth throttle group from VM.
2025-10-11 08:39:19 (23556): Removing VM from VirtualBox.
2025-10-11 08:39:24 (23556): called boinc_finish(0)

</stderr_txt>
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