Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
20:30:04 (2480162): wrapper (7.7.26015): starting
20:30:04 (2480162): wrapper: running run_atlas (--nthreads 3)
[2025-10-11 20:30:04] Arguments: --nthreads 3
[2025-10-11 20:30:04] Threads: 3
[2025-10-11 20:30:04] Checking for CVMFS
[2025-10-11 20:30:04] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 20:30:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 20:30:04] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 20:30:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 20:30:04] 2.9.2.0 1544458 3299 70904 151593 3 57 30569999 36864001 0 130560 0 2446686 99.990 110603 1181 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-11 20:30:04] CVMFS is ok
[2025-10-11 20:30:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 20:30:04] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 20:30:04] Further information can be found at the LHC@home message board.
[2025-10-11 20:30:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 20:30:04] Checking for apptainer binary...
[2025-10-11 20:30:04] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 20:30:04] Running /usr/bin/apptainer --version
[2025-10-11 20:30:04] apptainer version 1.4.1-1.1
[2025-10-11 20:30:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 20:30:04] atlasA223a
[2025-10-11 20:30:04] apptainer works
[2025-10-11 20:30:04] Set ATHENA_PROC_NUMBER=3
[2025-10-11 20:30:04] Set ATHENA_CORE_NUMBER=3
[2025-10-11 20:30:04] Starting ATLAS job with PandaID=6838000772
[2025-10-11 20:30:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-11 22:00:29]  *** The last 200 lines of the pilot log: ***
[2025-10-11 22:00:29] 2025-10-11 19:59:53,112 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-11 22:00:29] 2025-10-11 19:59:53,112 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-11 22:00:29] 2025-10-11 19:59:53,112 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-11 22:00:29] 2025-10-11 19:59:53,112 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-11 22:00:29] 2025-10-11 19:59:53,112 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-11 22:00:29] 2025-10-11 19:59:53,112 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-11 22:00:29] 2025-10-11 19:59:53,112 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-11 22:00:29] 2025-10-11 19:59:53,112 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-11 22:00:29] 2025-10-11 19:59:53,112 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-11 22:00:29] 2025-10-11 19:59:53,112 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-11 22:00:29] 2025-10-11 19:59:53,112 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-11 22:00:29] 2025-10-11 19:59:53,112 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-11 22:00:29] 2025-10-11 19:59:53,112 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-11 22:00:29] 2025-10-11 19:59:53,112 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-11 22:00:29] 2025-10-11 19:59:53,112 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-11 22:00:29] 2025-10-11 19:59:53,112 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-11 22:00:29] 2025-10-11 19:59:53,112 | INFO     | job 6838000772 has completed (purged errors)
[2025-10-11 22:00:29] 2025-10-11 19:59:53,112 | INFO     | overall cleanup function is called
[2025-10-11 22:00:29] 2025-10-11 19:59:54,117 | INFO     | --- collectZombieJob: --- 10, [2490355]
[2025-10-11 22:00:29] 2025-10-11 19:59:54,117 | INFO     | zombie collector waiting for pid 2490355
[2025-10-11 22:00:29] 2025-10-11 19:59:54,118 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-11 22:00:29] 2025-10-11 19:59:54,118 | INFO     | collected zombie processes
[2025-10-11 22:00:29] 2025-10-11 19:59:54,118 | INFO     | will attempt to kill all subprocesses of pid=2490355
[2025-10-11 22:00:29] 2025-10-11 19:59:54,199 | INFO     | process IDs to be killed: [2490355] (in reverse order)
[2025-10-11 22:00:29] 2025-10-11 19:59:54,223 | WARNING  | found no corresponding commands to process id(s)
[2025-10-11 22:00:29] 2025-10-11 19:59:54,223 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-11 22:00:29] 2025-10-11 19:59:54,224 | INFO     | did not find any defunct processes belonging to 2490355
[2025-10-11 22:00:29] 2025-10-11 19:59:54,225 | INFO     | did not find any defunct processes belonging to 2490355
[2025-10-11 22:00:29] 2025-10-11 19:59:54,225 | INFO     | ready for new job
[2025-10-11 22:00:29] 2025-10-11 19:59:54,225 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-11 22:00:29] 2025-10-11 19:59:54,226 | INFO     | ***************************************
[2025-10-11 22:00:29] 2025-10-11 19:59:54,226 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-11 22:00:29] 2025-10-11 19:59:54,226 | INFO     | ***************************************
[2025-10-11 22:00:29] 2025-10-11 19:59:54,226 | INFO     | 
[2025-10-11 22:00:29] 2025-10-11 19:59:54,226 | INFO     | architecture information:
[2025-10-11 22:00:29] 2025-10-11 19:59:54,227 | INFO     | executing command: cat /etc/os-release
[2025-10-11 22:00:29] 2025-10-11 19:59:54,236 | INFO     | cat /etc/os-release:
[2025-10-11 22:00:29] NAME="CentOS Linux"
[2025-10-11 22:00:29] VERSION="7 (Core)"
[2025-10-11 22:00:29] ID="centos"
[2025-10-11 22:00:29] ID_LIKE="rhel fedora"
[2025-10-11 22:00:29] VERSION_ID="7"
[2025-10-11 22:00:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-11 22:00:29] ANSI_COLOR="0;31"
[2025-10-11 22:00:29] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-11 22:00:29] HOME_URL="https://www.centos.org/"
[2025-10-11 22:00:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-11 22:00:29] 
[2025-10-11 22:00:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-11 22:00:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-11 22:00:29] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-11 22:00:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-11 22:00:29] 
[2025-10-11 22:00:29] 2025-10-11 19:59:54,236 | INFO     | ***************************************
[2025-10-11 22:00:29] 2025-10-11 19:59:54,740 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-11 22:00:29] 2025-10-11 19:59:54,752 | INFO     | sufficient remaining disk space (329459433472 B)
[2025-10-11 22:00:29] 2025-10-11 19:59:54,752 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-11 22:00:29] 2025-10-11 19:59:54,753 | INFO     | current server update state: UPDATING_FINAL
[2025-10-11 22:00:29] 2025-10-11 19:59:54,753 | INFO     | update_server=False
[2025-10-11 22:00:29] 2025-10-11 19:59:54,753 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-11 22:00:29] 2025-10-11 19:59:54,753 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-11 22:00:29] 2025-10-11 19:59:54,753 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-11 22:00:29] 2025-10-11 19:59:55,202 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-11 22:00:29] 2025-10-11 19:59:55,202 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-11 22:00:29] 2025-10-11 19:59:55,203 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-11 22:00:29] 2025-10-11 19:59:55,203 | INFO     | will abort loop
[2025-10-11 22:00:29] 2025-10-11 19:59:55,636 | INFO     | all data control threads have been joined
[2025-10-11 22:00:29] 2025-10-11 19:59:55,758 | INFO     | [job] retrieve thread has finished
[2025-10-11 22:00:29] 2025-10-11 19:59:55,759 | INFO     | [job] queue monitor thread has finished
[2025-10-11 22:00:29] 2025-10-11 19:59:55,857 | INFO     | all payload control threads have been joined
[2025-10-11 22:00:29] 2025-10-11 19:59:55,880 | INFO     | all job control threads have been joined
[2025-10-11 22:00:29] 2025-10-11 19:59:55,961 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-11 22:00:29] 2025-10-11 19:59:56,209 | INFO     | [job] job monitor thread has finished
[2025-10-11 22:00:29] 2025-10-11 19:59:56,359 | INFO     | [payload] validate_post thread has finished
[2025-10-11 22:00:29] 2025-10-11 19:59:56,576 | INFO     | [job] create_data_payload thread has finished
[2025-10-11 22:00:29] 2025-10-11 19:59:56,602 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-11 22:00:29] 2025-10-11 19:59:56,641 | INFO     | [data] control thread has finished
[2025-10-11 22:00:29] 2025-10-11 19:59:56,732 | INFO     | [job] validate thread has finished
[2025-10-11 22:00:29] 2025-10-11 19:59:56,756 | INFO     | [data] copytool_out thread has finished
[2025-10-11 22:00:29] 2025-10-11 19:59:56,789 | INFO     | [payload] validate_pre thread has finished
[2025-10-11 22:00:29] 2025-10-11 19:59:56,853 | INFO     | [data] copytool_in thread has finished
[2025-10-11 22:00:29] 2025-10-11 19:59:56,863 | INFO     | [payload] control thread has finished
[2025-10-11 22:00:29] 2025-10-11 19:59:56,886 | INFO     | [job] control thread has finished
[2025-10-11 22:00:29] 2025-10-11 19:59:57,140 | INFO     | [payload] failed_post thread has finished
[2025-10-11 22:00:29] 2025-10-11 19:59:57,232 | INFO     | [payload] execute_payloads thread has finished
[2025-10-11 22:00:29] 2025-10-11 20:00:00,609 | INFO     | [data] queue_monitor thread has finished
[2025-10-11 22:00:29] 2025-10-11 20:00:15,235 [wrapper] supervise_pilot (15 min periods counter: 7)
[2025-10-11 22:00:29] 2025-10-11 20:00:23,381 | INFO     | [monitor] cgroup control has ended
[2025-10-11 22:00:29] 2025-10-11 20:00:23,989 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140424712124224)>', '<ExcThread(monitor, started 140424047994624)>']
[2025-10-11 22:00:29] 2025-10-11 20:00:24,856 | INFO     | PID=2483894 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-11 22:00:29] 2025-10-11 20:00:24,856 | INFO     | found 0 job(s) in 20 queues
[2025-10-11 22:00:29] 2025-10-11 20:00:24,856 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-11 22:00:29] 2025-10-11 20:00:24,857 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-11 22:00:29] 2025-10-11 20:00:24,857 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-11 22:00:29] 2025-10-11 20:00:24,857 | INFO     | [monitor] control thread has ended
[2025-10-11 22:00:29] 2025-10-11 20:00:29,015 | INFO     | all workflow threads have been joined
[2025-10-11 22:00:29] 2025-10-11 20:00:29,015 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-11 22:00:29] 2025-10-11 20:00:29,016 | INFO     | traces error code: 0
[2025-10-11 22:00:29] 2025-10-11 20:00:29,016 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-11 22:00:29] 2025-10-11 20:00:29,063 [wrapper] ==== pilot stdout END ====
[2025-10-11 22:00:29] 2025-10-11 20:00:29,066 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-11 22:00:29] 2025-10-11 20:00:29,069 [wrapper] pilotpid: 2483894
[2025-10-11 22:00:29] 2025-10-11 20:00:29,071 [wrapper] Pilot exit status: 0
[2025-10-11 22:00:29] 2025-10-11 20:00:29,079 [wrapper] pandaids: 6838000772
[2025-10-11 22:00:29] 2025-10-11 20:00:29,095 [wrapper] cleanup supervisor_pilot 2504949 2483895
[2025-10-11 22:00:29] 2025-10-11 20:00:29,098 [wrapper] Test setup, not cleaning
[2025-10-11 22:00:29] 2025-10-11 20:00:29,100 [wrapper] apfmon messages muted
[2025-10-11 22:00:29] 2025-10-11 20:00:29,103 [wrapper] ==== wrapper stdout END ====
[2025-10-11 22:00:29] 2025-10-11 20:00:29,105 [wrapper] ==== wrapper stderr END ====
[2025-10-11 22:00:29]  *** Error codes and diagnostics ***
[2025-10-11 22:00:29]     "exeErrorCode": 0,
[2025-10-11 22:00:29]     "exeErrorDiag": "",
[2025-10-11 22:00:29]     "pilotErrorCode": 0,
[2025-10-11 22:00:29]     "pilotErrorDiag": "",
[2025-10-11 22:00:29]  *** Listing of results directory ***
[2025-10-11 22:00:29] total 407436
[2025-10-11 22:00:29] -rw-r--r-- 1 boinc boinc    557409 Oct 11 05:19 pilot3.tar.gz
[2025-10-11 22:00:29] -rwx------ 1 boinc boinc     36292 Oct 11 05:21 runpilot2-wrapper.sh
[2025-10-11 22:00:29] -rw-r--r-- 1 boinc boinc      5112 Oct 11 05:21 queuedata.json
[2025-10-11 22:00:29] -rw-r--r-- 1 boinc boinc       100 Oct 11 20:30 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-11 22:00:29] -rwxr-xr-x 1 boinc boinc      7986 Oct 11 20:30 run_atlas
[2025-10-11 22:00:29] -rw-r--r-- 1 boinc boinc       105 Oct 11 20:30 job.xml
[2025-10-11 22:00:29] -rw-r--r-- 2 boinc boinc 221410916 Oct 11 20:30 EVNT.46676267._002019.pool.root.1
[2025-10-11 22:00:29] -rw-r--r-- 2 boinc boinc    569670 Oct 11 20:30 input.tar.gz
[2025-10-11 22:00:29] -rw-r--r-- 2 boinc boinc     15120 Oct 11 20:30 start_atlas.sh
[2025-10-11 22:00:29] drwxrwx--x 2 boinc boinc      4096 Oct 11 20:30 shared
[2025-10-11 22:00:29] -rw-r--r-- 1 boinc boinc         0 Oct 11 20:30 boinc_setup_complete
[2025-10-11 22:00:29] -rw-r--r-- 1 boinc boinc      6200 Oct 11 20:30 init_data.xml
[2025-10-11 22:00:29] -rw-r--r-- 1 boinc boinc         0 Oct 11 20:30 boinc_lockfile
[2025-10-11 22:00:29] -rw-r--r-- 1 boinc boinc      2550 Oct 11 20:30 pandaJob.out
[2025-10-11 22:00:29] -rw------- 1 boinc boinc    975520 Oct 11 20:30 agis_schedconf.cvmfs.json
[2025-10-11 22:00:29] -rw------- 1 boinc boinc   1560580 Oct 11 20:30 agis_ddmendpoints.agis.ALL.json
[2025-10-11 22:00:29] drwx------ 5 boinc boinc      4096 Oct 11 20:30 pilot3
[2025-10-11 22:00:29] -rw------- 1 boinc boinc 189830444 Oct 11 21:59 HITS.46676269._050144.pool.root.1
[2025-10-11 22:00:29] -rw-r--r-- 1 boinc boinc       530 Oct 11 21:59 boinc_task_state.xml
[2025-10-11 22:00:29] -rw------- 1 boinc boinc        95 Oct 11 21:59 pilot_heartbeat.json
[2025-10-11 22:00:29] -rw------- 1 boinc boinc      1019 Oct 11 21:59 memory_monitor_summary.json
[2025-10-11 22:00:29] -rw------- 1 boinc boinc    252904 Oct 11 21:59 log.46676269._050144.job.log.tgz.1
[2025-10-11 22:00:29] -rw------- 1 boinc boinc      7773 Oct 11 21:59 heartbeat.json
[2025-10-11 22:00:29] -rw-r--r-- 1 boinc boinc        27 Oct 11 22:00 wrapper_checkpoint.txt
[2025-10-11 22:00:29] -rw-r--r-- 1 boinc boinc      8192 Oct 11 22:00 boinc_mmap_file
[2025-10-11 22:00:29] -rw------- 1 boinc boinc      4938 Oct 11 22:00 pilotlog.txt
[2025-10-11 22:00:29] -rw------- 1 boinc boinc    784879 Oct 11 22:00 log.46676269._050144.job.log.1
[2025-10-11 22:00:29] -rw------- 1 boinc boinc       357 Oct 11 22:00 output.list
[2025-10-11 22:00:29] -rw-r--r-- 1 boinc boinc       620 Oct 11 22:00 runtime_log
[2025-10-11 22:00:29] -rw------- 1 boinc boinc   1054720 Oct 11 22:00 result.tar.gz
[2025-10-11 22:00:29] -rw-r--r-- 1 boinc boinc      8797 Oct 11 22:00 runtime_log.err
[2025-10-11 22:00:29] -rw------- 1 boinc boinc       662 Oct 11 22:00 T5DMDmsLfR8n9Rq4apOajLDm4fhM0noT9bVof3QYDmY3QMDmVzatVo.diag
[2025-10-11 22:00:29] -rw-r--r-- 1 boinc boinc     12786 Oct 11 22:00 stderr.txt
[2025-10-11 22:00:29] HITS file was successfully produced:
[2025-10-11 22:00:29] -rw------- 1 boinc boinc 189830444 Oct 11 21:59 shared/HITS.pool.root.1
[2025-10-11 22:00:29]  *** Contents of shared directory: ***
[2025-10-11 22:00:29] total 403224
[2025-10-11 22:00:29] -rw-r--r-- 2 boinc boinc 221410916 Oct 11 20:30 ATLAS.root_0
[2025-10-11 22:00:29] -rw-r--r-- 2 boinc boinc    569670 Oct 11 20:30 input.tar.gz
[2025-10-11 22:00:29] -rw-r--r-- 2 boinc boinc     15120 Oct 11 20:30 start_atlas.sh
[2025-10-11 22:00:29] -rw------- 1 boinc boinc 189830444 Oct 11 21:59 HITS.pool.root.1
[2025-10-11 22:00:29] -rw------- 1 boinc boinc   1054720 Oct 11 22:00 result.tar.gz
22:00:30 (2480162): run_atlas exited; CPU time 15409.745236
22:00:30 (2480162): called boinc_finish(0)

</stderr_txt>
]]>

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