Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
04:31:44 (4139489): wrapper (7.7.26015): starting
04:31:44 (4139489): wrapper: running run_atlas (--nthreads 12)
[2025-10-11 04:31:44] Arguments: --nthreads 12
[2025-10-11 04:31:44] Threads: 12
[2025-10-11 04:31:44] Checking for CVMFS
[2025-10-11 04:31:44] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 04:31:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 04:31:44] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 04:31:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 04:31:44] 2.13.2.0 3683012 11111 133300 151577 3 196 35613087 40960001 10166 16776704 0 116050905 99.826 55013237 32594 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-11 04:31:44] CVMFS is ok
[2025-10-11 04:31:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 04:31:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 04:31:44] Further information can be found at the LHC@home message board.
[2025-10-11 04:31:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 04:31:44] Checking for apptainer binary...
[2025-10-11 04:31:44] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 04:31:44] Running /usr/bin/apptainer --version
[2025-10-11 04:31:44] apptainer version 1.4.3-1.el9
[2025-10-11 04:31:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 04:31:45] c8-7-4.aglt2.org
[2025-10-11 04:31:45] apptainer works
[2025-10-11 04:31:45] Set ATHENA_PROC_NUMBER=12
[2025-10-11 04:31:45] Set ATHENA_CORE_NUMBER=12
[2025-10-11 04:31:45] Starting ATLAS job with PandaID=6837874279
[2025-10-11 04:31:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-11 05:06:17]  *** The last 200 lines of the pilot log: ***
[2025-10-11 05:06:17] ]
[2025-10-11 05:06:17] 2025-10-11 09:04:57,077 | INFO     | transferring file log.46676269._046801.job.log.tgz.1 from /tmp/boinchome/slots/3/PanDA_Pilot-6837874279/log.46676269._046801.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-11 05:06:17] 2025-10-11 09:04:57,078 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/3/PanDA_Pilot-6837874279/log.46676269._046801.job.log.tgz.1 /tmp/boinchome/slots/3/log.46676269._046801.job
[2025-10-11 05:06:17] 2025-10-11 09:04:57,094 | INFO     | adding to output.list: log.46676269._046801.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e2/9b/log.46676269._046801.job.log.tg
[2025-10-11 05:06:17] 2025-10-11 09:04:57,095 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-11 05:06:17] 2025-10-11 09:04:57,095 | INFO     | summary of transferred files:
[2025-10-11 05:06:17] 2025-10-11 09:04:57,095 | INFO     |  -- lfn=log.46676269._046801.job.log.tgz.1, status_code=0, status=transferred
[2025-10-11 05:06:17] 2025-10-11 09:04:57,095 | INFO     | stage-out finished correctly
[2025-10-11 05:06:17] 2025-10-11 09:04:57,151 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-11 05:06:17] 2025-10-11 09:04:58,003 | INFO     | PID=4144103 has CPU usage=10.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-10-11 05:06:17] 2025-10-11 09:04:58,003 | INFO     | .. there are 15 such processes running
[2025-10-11 05:06:17] 2025-10-11 09:04:58,374 | INFO     | job 6837874279 has state=finished
[2025-10-11 05:06:17] 2025-10-11 09:04:58,375 | INFO     | preparing for final server update for job 6837874279 in state='finished'
[2025-10-11 05:06:17] 2025-10-11 09:04:58,375 | INFO     | this job has now completed (state=finished)
[2025-10-11 05:06:17] 2025-10-11 09:04:58,375 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-11 05:06:17] 2025-10-11 09:04:58,375 | INFO     | log transfer has been attempted: DONE
[2025-10-11 05:06:17] 2025-10-11 09:04:58,375 | INFO     | job 6837874279 has finished - writing final server update
[2025-10-11 05:06:17] 2025-10-11 09:04:58,375 | INFO     | total number of processed events: 400 (read)
[2025-10-11 05:06:17] 2025-10-11 09:04:58,376 | INFO     | executing command: lscpu
[2025-10-11 05:06:17] 2025-10-11 09:04:58,441 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-11 05:06:17] 2025-10-11 09:04:59,003 | INFO     | time since job start (1986s) is within the limit (172800.0s)
[2025-10-11 05:06:17] 2025-10-11 09:05:01,008 | INFO     | time since job start (1988s) is within the limit (172800.0s)
[2025-10-11 05:06:17] 2025-10-11 09:05:01,906 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-11 05:06:17] 2025-10-11 09:05:01,911 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3615.4001406249968
[2025-10-11 05:06:17] 2025-10-11 09:05:01,925 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6837874279/memory_monitor_summary.json (trf name=prmon)
[2025-10-11 05:06:17] 2025-10-11 09:05:01,926 | INFO     | extracted standard info from prmon json
[2025-10-11 05:06:17] 2025-10-11 09:05:01,927 | INFO     | extracted standard memory fields from prmon json
[2025-10-11 05:06:17] 2025-10-11 09:05:01,927 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-11 05:06:17] 2025-10-11 09:05:01,927 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-11 05:06:17] 2025-10-11 09:05:01,927 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-11 05:06:17] 2025-10-11 09:05:01,928 | INFO     | fitting pss+swap vs Time
[2025-10-11 05:06:17] 2025-10-11 09:05:01,928 | INFO     | sum of square deviations: 5441962.5
[2025-10-11 05:06:17] 2025-10-11 09:05:01,928 | INFO     | sum of deviations: -10545649.499999994
[2025-10-11 05:06:17] 2025-10-11 09:05:01,928 | INFO     | mean x: 1760172602.5
[2025-10-11 05:06:17] 2025-10-11 09:05:01,928 | INFO     | mean y: 2366863.1923076925
[2025-10-11 05:06:17] 2025-10-11 09:05:01,928 | INFO     | -- intersect: 3413298732.985202
[2025-10-11 05:06:17] 2025-10-11 09:05:01,928 | INFO     | intersect: 3413298732.985202
[2025-10-11 05:06:17] 2025-10-11 09:05:01,928 | INFO     | chi2: 0.004975777659816858
[2025-10-11 05:06:17] 2025-10-11 09:05:01,928 | INFO     | -- intersect: 3413298732.985202
[2025-10-11 05:06:17] 2025-10-11 09:05:01,928 | INFO     | current memory leak: -1.94 B/s (using 26 data points, chi2=0.00)
[2025-10-11 05:06:17] 2025-10-11 09:05:01,928 | INFO     | could have reported an average CPU frequency of 3618 MHz (5 samples)
[2025-10-11 05:06:17] 2025-10-11 09:05:01,928 | INFO     | ..............................
[2025-10-11 05:06:17] 2025-10-11 09:05:01,928 | INFO     | . Timing measurements:
[2025-10-11 05:06:17] 2025-10-11 09:05:01,929 | INFO     | . get job = 0 s
[2025-10-11 05:06:17] 2025-10-11 09:05:01,929 | INFO     | . initial setup = 2 s
[2025-10-11 05:06:17] 2025-10-11 09:05:01,929 | INFO     | . payload setup = 3 s
[2025-10-11 05:06:17] 2025-10-11 09:05:01,929 | INFO     | . stage-in = 0 s
[2025-10-11 05:06:17] 2025-10-11 09:05:01,929 | INFO     | . payload execution = 1961 s
[2025-10-11 05:06:17] 2025-10-11 09:05:01,929 | INFO     | . stage-out = 0 s
[2025-10-11 05:06:17] 2025-10-11 09:05:01,929 | INFO     | . log creation = 0 s
[2025-10-11 05:06:17] 2025-10-11 09:05:01,929 | INFO     | ..............................
[2025-10-11 05:06:17] 2025-10-11 09:05:01,985 | INFO     | 
[2025-10-11 05:06:17] 2025-10-11 09:05:01,985 | INFO     | job summary report
[2025-10-11 05:06:17] 2025-10-11 09:05:01,985 | INFO     | --------------------------------------------------
[2025-10-11 05:06:17] 2025-10-11 09:05:01,985 | INFO     | PanDA job id: 6837874279
[2025-10-11 05:06:17] 2025-10-11 09:05:01,986 | INFO     | task id: 46676269
[2025-10-11 05:06:17] 2025-10-11 09:05:01,986 | INFO     | errors: (none)
[2025-10-11 05:06:17] 2025-10-11 09:05:01,986 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-11 05:06:17] 2025-10-11 09:05:01,986 | INFO     | pilot state: finished 
[2025-10-11 05:06:17] 2025-10-11 09:05:01,986 | INFO     | transexitcode: 0
[2025-10-11 05:06:17] 2025-10-11 09:05:01,986 | INFO     | exeerrorcode: 0
[2025-10-11 05:06:17] 2025-10-11 09:05:01,986 | INFO     | exeerrordiag: 
[2025-10-11 05:06:17] 2025-10-11 09:05:01,986 | INFO     | exitcode: 0
[2025-10-11 05:06:17] 2025-10-11 09:05:01,986 | INFO     | exitmsg: OK
[2025-10-11 05:06:17] 2025-10-11 09:05:01,986 | INFO     | cpuconsumptiontime: 21076 s
[2025-10-11 05:06:17] 2025-10-11 09:05:01,986 | INFO     | nevents: 400
[2025-10-11 05:06:17] 2025-10-11 09:05:01,986 | INFO     | neventsw: 0
[2025-10-11 05:06:17] 2025-10-11 09:05:01,986 | INFO     | pid: 4152252
[2025-10-11 05:06:17] 2025-10-11 09:05:01,986 | INFO     | pgrp: 4152252
[2025-10-11 05:06:17] 2025-10-11 09:05:01,986 | INFO     | corecount: 12
[2025-10-11 05:06:17] 2025-10-11 09:05:01,986 | INFO     | event service: False
[2025-10-11 05:06:17] 2025-10-11 09:05:01,986 | INFO     | sizes: {0: 2348857, 4: 2349119, 11: 2349147, 1969: 2374123, 1970: 2383177, 1975: 2383347}
[2025-10-11 05:06:17] 2025-10-11 09:05:01,986 | INFO     | --------------------------------------------------
[2025-10-11 05:06:17] 2025-10-11 09:05:01,986 | INFO     | 
[2025-10-11 05:06:17] 2025-10-11 09:05:01,986 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-10-11 05:06:17] 2025-10-11 09:05:02,003 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-11 05:06:17] 2025-10-11 09:05:02,004 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-11 05:06:17] 2025-10-11 09:05:02,004 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-11 05:06:17] 2025-10-11 09:05:02,004 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-11 05:06:17] 2025-10-11 09:05:02,004 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-11 05:06:17] 2025-10-11 09:05:02,004 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-11 05:06:17] 2025-10-11 09:05:02,004 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-11 05:06:17] 2025-10-11 09:05:02,004 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-11 05:06:17] 2025-10-11 09:05:02,004 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-11 05:06:17] 2025-10-11 09:05:02,004 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-11 05:06:17] 2025-10-11 09:05:02,004 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-11 05:06:17] 2025-10-11 09:05:02,004 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-11 05:06:17] 2025-10-11 09:05:02,004 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-11 05:06:17] 2025-10-11 09:05:02,004 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-11 05:06:17] 2025-10-11 09:05:02,004 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-11 05:06:17] 2025-10-11 09:05:02,004 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-11 05:06:17] 2025-10-11 09:05:02,004 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-11 05:06:17] 2025-10-11 09:05:02,004 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-11 05:06:17] 2025-10-11 09:05:02,004 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-11 05:06:17] 2025-10-11 09:05:02,004 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-11 05:06:17] 2025-10-11 09:05:02,004 | INFO     | job 6837874279 has completed (purged errors)
[2025-10-11 05:06:17] 2025-10-11 09:05:02,004 | INFO     | overall cleanup function is called
[2025-10-11 05:06:17] 2025-10-11 09:05:02,695 | WARNING  | process 4152252 can no longer be monitored (due to stat problems) - aborting
[2025-10-11 05:06:17] 2025-10-11 09:05:02,930 | INFO     | using path: /tmp/boinchome/slots/3/memory_monitor_summary.json (trf name=prmon)
[2025-10-11 05:06:17] 2025-10-11 09:05:02,931 | INFO     | using path: /tmp/boinchome/slots/3/memory_monitor_summary.json (trf name=prmon)
[2025-10-11 05:06:17] 2025-10-11 09:05:02,931 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2025-10-11 05:06:17] 2025-10-11 09:05:02,931 | WARNING  | maxPSS not found in memory monitor output
[2025-10-11 05:06:17] 2025-10-11 09:05:02,931 | INFO     | skipping file size check of payload stdout file (/tmp/boinchome/slots/3/PanDA_Pilot-6837874279/payload.stdout) since it has not been created yet
[2025-10-11 05:06:17] 2025-10-11 09:05:02,931 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-10-11 05:06:17] 2025-10-11 09:05:02,947 | INFO     | sufficient remaining disk space (168059469824 B)
[2025-10-11 05:06:17] 2025-10-11 09:05:02,947 | WARNING  | skipping size check of workdir since it has not been created yet
[2025-10-11 05:06:17] 2025-10-11 09:05:02,947 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/3/PanDA_Pilot-6837874279/HITS.46676269._046801.pool.root.1 since it does not exist
[2025-10-11 05:06:17] 2025-10-11 09:05:03,012 | INFO     | --- collectZombieJob: --- 10, [4152252]
[2025-10-11 05:06:17] 2025-10-11 09:05:03,012 | INFO     | zombie collector waiting for pid 4152252
[2025-10-11 05:06:17] 2025-10-11 09:05:03,012 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-11 05:06:17] 2025-10-11 09:05:03,013 | INFO     | collected zombie processes
[2025-10-11 05:06:17] 2025-10-11 09:05:03,013 | INFO     | will attempt to kill all subprocesses of pid=4152252
[2025-10-11 05:06:17] 2025-10-11 09:05:03,613 | INFO     | number of running child processes to parent process 4152252: 1
[2025-10-11 05:06:17] 2025-10-11 09:05:03,613 | INFO     | maximum number of monitored processes: 6
[2025-10-11 05:06:17] 2025-10-11 09:05:03,613 | INFO     | aborting job monitoring since job object (job id=6837874279) has expired
[2025-10-11 05:06:17] 2025-10-11 09:05:03,633 | INFO     | process IDs to be killed: [4152252] (in reverse order)
[2025-10-11 05:06:17] 2025-10-11 09:05:03,765 | WARNING  | found no corresponding commands to process id(s)
[2025-10-11 05:06:17] 2025-10-11 09:05:03,765 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-11 05:06:17] 2025-10-11 09:05:03,781 | INFO     | did not find any defunct processes belonging to 4152252
[2025-10-11 05:06:17] 2025-10-11 09:05:03,794 | INFO     | did not find any defunct processes belonging to 4152252
[2025-10-11 05:06:17] 2025-10-11 09:05:03,795 | INFO     | ready for new job
[2025-10-11 05:06:17] 2025-10-11 09:05:03,795 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-11 05:06:17] 2025-10-11 09:05:03,796 | INFO     | ***************************************
[2025-10-11 05:06:17] 2025-10-11 09:05:03,796 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-11 05:06:17] 2025-10-11 09:05:03,796 | INFO     | ***************************************
[2025-10-11 05:06:17] 2025-10-11 09:05:03,796 | INFO     | 
[2025-10-11 05:06:17] 2025-10-11 09:05:03,813 | INFO     | architecture information:
[2025-10-11 05:06:17] 2025-10-11 09:05:03,813 | INFO     | executing command: cat /etc/os-release
[2025-10-11 05:06:17] 2025-10-11 09:05:03,827 | INFO     | cat /etc/os-release:
[2025-10-11 05:06:17] NAME="CentOS Linux"
[2025-10-11 05:06:17] VERSION="7 (Core)"
[2025-10-11 05:06:17] ID="centos"
[2025-10-11 05:06:17] ID_LIKE="rhel fedora"
[2025-10-11 05:06:17] VERSION_ID="7"
[2025-10-11 05:06:17] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-11 05:06:17] ANSI_COLOR="0;31"
[2025-10-11 05:06:17] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-11 05:06:17] HOME_URL="https://www.centos.org/"
[2025-10-11 05:06:17] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-11 05:06:17] 
[2025-10-11 05:06:17] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-11 05:06:17] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-11 05:06:17] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-11 05:06:17] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-11 05:06:17] 
[2025-10-11 05:06:17] 2025-10-11 09:05:03,828 | INFO     | ***************************************
[2025-10-11 05:06:17] 2025-10-11 09:05:04,331 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-10-11 05:06:17] 2025-10-11 09:05:04,348 | INFO     | sufficient remaining disk space (168059469824 B)
[2025-10-11 05:06:17] 2025-10-11 09:05:04,348 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-11 05:06:17] 2025-10-11 09:05:04,348 | INFO     | current server update state: UPDATING_FINAL
[2025-10-11 05:06:17] 2025-10-11 09:05:04,349 | INFO     | update_server=False
[2025-10-11 05:06:17] 2025-10-11 09:05:04,349 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-11 05:06:17] 2025-10-11 09:05:04,349 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-11 05:06:17] 2025-10-11 09:05:04,349 | INFO     | will abort loop
[2025-10-11 05:06:17] 2025-10-11 09:05:04,397 | INFO     | all payload control threads have been joined
[2025-10-11 05:06:17] 2025-10-11 09:05:04,803 | INFO     | all data control threads have been joined
[2025-10-11 05:06:17] 2025-10-11 09:05:05,163 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-11 05:06:17] 2025-10-11 09:05:05,353 | INFO     | [job] retrieve thread has finished
[2025-10-11 05:06:17] 2025-10-11 09:05:05,354 | INFO     | [job] job monitor thread has finished
[2025-10-11 05:06:17] 2025-10-11 09:05:05,402 | INFO     | [payload] control thread has finished
[2025-10-11 05:06:17] 2025-10-11 09:05:05,414 | INFO     | [job] validate thread has finished
[2025-10-11 05:06:17] 2025-10-11 09:05:05,426 | INFO     | [job] create_data_payload thread has finished
[2025-10-11 05:06:17] 2025-10-11 09:05:05,574 | INFO     | [payload] validate_pre thread has finished
[2025-10-11 05:06:17] 2025-10-11 09:05:05,806 | INFO     | [data] control thread has finished
[2025-10-11 05:06:17] 2025-10-11 09:05:05,905 | INFO     | [data] copytool_in thread has finished
[2025-10-11 05:06:17] 2025-10-11 09:05:05,918 | INFO     | all job control threads have been joined
[2025-10-11 05:06:17] 2025-10-11 09:05:05,951 | INFO     | [payload] execute_payloads thread has finished
[2025-10-11 05:06:17] 2025-10-11 09:05:06,598 | INFO     | [payload] validate_post thread has finished
[2025-10-11 05:06:17] 2025-10-11 09:05:06,675 | INFO     | [payload] failed_post thread has finished
[2025-10-11 05:06:17] 2025-10-11 09:05:06,923 | INFO     | [job] control thread has finished
[2025-10-11 05:06:17] 2025-10-11 09:05:06,995 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-11 05:06:17] 2025-10-11 09:05:07,168 | INFO     | [data] copytool_out thread has finished
[2025-10-11 05:06:17] 2025-10-11 09:05:07,715 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-11 05:06:17] 2025-10-11 09:05:08,001 | INFO     | [job] queue monitor thread has finished
[2025-10-11 05:06:17] 2025-10-11 09:05:11,717 | INFO     | [data] queue_monitor thread has finished
[2025-10-11 05:06:17] 2025-10-11 09:05:15,255 | INFO     | job.realtimelogging is not enabled
[2025-10-11 05:06:17] 2025-10-11 09:05:16,260 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-11 05:06:17] 2025-10-11 09:05:34,513 | INFO     | PID=4144103 has CPU usage=5.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-11 05:06:17] 2025-10-11 09:05:34,514 | INFO     | .. there are 15 such processes running
[2025-10-11 05:06:17] 2025-10-11 09:05:34,514 | INFO     | found 0 job(s) in 20 queues
[2025-10-11 05:06:17] 2025-10-11 09:05:34,514 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-11 05:06:17] 2025-10-11 09:05:34,514 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-11 05:06:17] 2025-10-11 09:05:55,640 | INFO     | [monitor] cgroup control has ended
[2025-10-11 05:06:17] 2025-10-11 09:05:55,832 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140389188339520)>', '<ExcThread(monitor, started 140388706801408)>']
[2025-10-11 05:06:17] 2025-10-11 09:05:56,622 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-11 05:06:17] 2025-10-11 09:05:56,622 | INFO     | [monitor] control thread has ended
[2025-10-11 05:06:17] 2025-10-11 09:06:00,854 | INFO     | all workflow threads have been joined
[2025-10-11 05:06:17] 2025-10-11 09:06:00,855 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-11 05:06:17] 2025-10-11 09:06:00,855 | INFO     | traces error code: 0
[2025-10-11 05:06:17] 2025-10-11 09:06:00,855 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-11 05:06:17] 2025-10-11 09:06:00,961 [wrapper] ==== pilot stdout END ====
[2025-10-11 05:06:17] 2025-10-11 09:06:00,964 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-11 05:06:17] 2025-10-11 09:06:00,966 [wrapper] pilotpid: 4144103
[2025-10-11 05:06:17] 2025-10-11 09:06:00,968 [wrapper] Pilot exit status: 0
[2025-10-11 05:06:17] 2025-10-11 09:06:00,976 [wrapper] pandaids: 6837874279
[2025-10-11 05:06:17] 2025-10-11 09:06:01,070 [wrapper] cleanup supervisor_pilot  129215 4144104
[2025-10-11 05:06:17] 2025-10-11 09:06:01,073 [wrapper] Test setup, not cleaning
[2025-10-11 05:06:17] 2025-10-11 09:06:01,075 [wrapper] apfmon messages muted
[2025-10-11 05:06:17] 2025-10-11 09:06:01,077 [wrapper] ==== wrapper stdout END ====
[2025-10-11 05:06:17] 2025-10-11 09:06:01,079 [wrapper] ==== wrapper stderr END ====
[2025-10-11 05:06:17]  *** Error codes and diagnostics ***
[2025-10-11 05:06:17]     "exeErrorCode": 0,
[2025-10-11 05:06:17]     "exeErrorDiag": "",
[2025-10-11 05:06:17]     "pilotErrorCode": 0,
[2025-10-11 05:06:17]     "pilotErrorDiag": "",
[2025-10-11 05:06:17]  *** Listing of results directory ***
[2025-10-11 05:06:17] total 412916
[2025-10-11 05:06:17] -rw-r--r--. 1 boincer umatlas    557409 Oct 10 18:56 pilot3.tar.gz
[2025-10-11 05:06:17] -rwx------. 1 boincer umatlas     36292 Oct 10 19:10 runpilot2-wrapper.sh
[2025-10-11 05:06:17] -rw-r--r--. 1 boincer umatlas      5112 Oct 10 19:10 queuedata.json
[2025-10-11 05:06:17] -rw-r--r--. 1 boincer umatlas       100 Oct 11 04:31 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-11 05:06:17] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 11 04:31 run_atlas
[2025-10-11 05:06:17] -rw-r--r--. 1 boincer umatlas       105 Oct 11 04:31 job.xml
[2025-10-11 05:06:17] -rw-r--r--. 2 boincer umatlas 219901028 Oct 11 04:31 EVNT.46676267._001890.pool.root.1
[2025-10-11 05:06:17] -rw-r--r--. 2 boincer umatlas     15120 Oct 11 04:31 start_atlas.sh
[2025-10-11 05:06:17] drwxrwx--x. 2 boincer umatlas      4096 Oct 11 04:31 shared
[2025-10-11 05:06:17] -rw-r--r--. 2 boincer umatlas    569673 Oct 11 04:31 input.tar.gz
[2025-10-11 05:06:17] -rw-r--r--. 1 boincer umatlas         0 Oct 11 04:31 boinc_lockfile
[2025-10-11 05:06:17] -rw-r--r--. 1 boincer umatlas      2550 Oct 11 04:31 pandaJob.out
[2025-10-11 05:06:17] -rw-------. 1 boincer umatlas    975509 Oct 11 04:31 agis_schedconf.cvmfs.json
[2025-10-11 05:06:17] -rw-------. 1 boincer umatlas   1560580 Oct 11 04:31 agis_ddmendpoints.agis.ALL.json
[2025-10-11 05:06:17] drwx------. 5 boincer umatlas      4096 Oct 11 04:31 pilot3
[2025-10-11 05:06:17] -rw-r--r--. 1 boincer umatlas      7163 Oct 11 05:02 init_data.xml
[2025-10-11 05:06:17] -rw-r--r--. 1 boincer umatlas       529 Oct 11 05:04 boinc_task_state.xml
[2025-10-11 05:06:17] -rw-------. 1 boincer umatlas 197669265 Oct 11 05:04 HITS.46676269._046801.pool.root.1
[2025-10-11 05:06:17] -rw-------. 1 boincer umatlas        95 Oct 11 05:04 pilot_heartbeat.json
[2025-10-11 05:06:17] -rw-------. 1 boincer umatlas      1030 Oct 11 05:04 memory_monitor_summary.json
[2025-10-11 05:06:17] -rw-------. 1 boincer umatlas    349129 Oct 11 05:04 log.46676269._046801.job.log.tgz.1
[2025-10-11 05:06:17] -rw-------. 1 boincer umatlas      7771 Oct 11 05:05 heartbeat.json
[2025-10-11 05:06:17] -rw-------. 1 boincer umatlas      4899 Oct 11 05:06 pilotlog.txt
[2025-10-11 05:06:17] -rw-------. 1 boincer umatlas    324475 Oct 11 05:06 log.46676269._046801.job.log.1
[2025-10-11 05:06:17] -rw-------. 1 boincer umatlas       357 Oct 11 05:06 output.list
[2025-10-11 05:06:17] -rw-r--r--. 1 boincer umatlas       620 Oct 11 05:06 runtime_log
[2025-10-11 05:06:17] -rw-------. 1 boincer umatlas    696320 Oct 11 05:06 result.tar.gz
[2025-10-11 05:06:17] -rw-r--r--. 1 boincer umatlas      8695 Oct 11 05:06 runtime_log.err
[2025-10-11 05:06:17] -rw-------. 1 boincer umatlas       648 Oct 11 05:06 JywNDmJRbR8n9Rq4apOajLDm4fhM0noT9bVof3QYDmGmQMDmHK7Tum.diag
[2025-10-11 05:06:17] -rw-r--r--. 1 boincer umatlas        27 Oct 11 05:06 wrapper_checkpoint.txt
[2025-10-11 05:06:17] -rw-r--r--. 1 boincer umatlas      8192 Oct 11 05:06 boinc_mmap_file
[2025-10-11 05:06:17] -rw-r--r--. 1 boincer umatlas     22551 Oct 11 05:06 stderr.txt
[2025-10-11 05:06:17] HITS file was successfully produced:
[2025-10-11 05:06:17] -rw-------. 1 boincer umatlas 197669265 Oct 11 05:04 shared/HITS.pool.root.1
[2025-10-11 05:06:17]  *** Contents of shared directory: ***
[2025-10-11 05:06:17] total 409048
[2025-10-11 05:06:17] -rw-r--r--. 2 boincer umatlas 219901028 Oct 11 04:31 ATLAS.root_0
[2025-10-11 05:06:17] -rw-r--r--. 2 boincer umatlas     15120 Oct 11 04:31 start_atlas.sh
[2025-10-11 05:06:17] -rw-r--r--. 2 boincer umatlas    569673 Oct 11 04:31 input.tar.gz
[2025-10-11 05:06:17] -rw-------. 1 boincer umatlas 197669265 Oct 11 05:04 HITS.pool.root.1
[2025-10-11 05:06:17] -rw-------. 1 boincer umatlas    696320 Oct 11 05:06 result.tar.gz
05:06:18 (4139489): run_atlas exited; CPU time 21088.327646
05:06:18 (4139489): called boinc_finish(0)

</stderr_txt>
]]>

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