Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
01:15:51 (2006062): wrapper (7.7.26015): starting
01:15:51 (2006062): wrapper: running run_atlas (--nthreads 8)
[2025-10-11 01:15:51] Arguments: --nthreads 8
[2025-10-11 01:15:51] Threads: 8
[2025-10-11 01:15:51] Checking for CVMFS
[2025-10-11 01:15:51] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 01:15:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 01:15:51] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 01:15:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 01:15:52] 2.11.3.0 1870 28227 209184 151577 3 15 42860794 45568001 10694 130560 0 158680235 99.831 74348412 20556 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.163:3129 1
[2025-10-11 01:15:52] CVMFS is ok
[2025-10-11 01:15:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 01:15:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 01:15:52] Further information can be found at the LHC@home message board.
[2025-10-11 01:15:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 01:15:52] Checking for apptainer binary...
[2025-10-11 01:15:52] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 01:15:52] Running /usr/bin/apptainer --version
[2025-10-11 01:15:52] apptainer version 1.4.1-1.el9
[2025-10-11 01:15:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 01:15:53] wns0014.triumf.lcg
[2025-10-11 01:15:53] apptainer works
[2025-10-11 01:15:53] Set ATHENA_PROC_NUMBER=8
[2025-10-11 01:15:53] Set ATHENA_CORE_NUMBER=8
[2025-10-11 01:15:53] Starting ATLAS job with PandaID=6838118415
[2025-10-11 01:15:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-11 01:22:42]  *** The last 200 lines of the pilot log: ***
[2025-10-11 01:22:42] 2025-10-11 08:21:51,654 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-11 01:22:42] 2025-10-11 08:21:51,701 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-11 01:22:42] 2025-10-11 08:21:51,701 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-11 01:22:42] 2025-10-11 08:21:51,702 | WARNING  | wrong length of table data, x=[1760170683.0, 1760170744.0], y=[1959.0, 475002.0] (must be same and length>=4)
[2025-10-11 01:22:42] 2025-10-11 08:21:51,702 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-10-11 01:22:42] 2025-10-11 08:21:51,702 | INFO     | ..............................
[2025-10-11 01:22:42] 2025-10-11 08:21:51,702 | INFO     | . Timing measurements:
[2025-10-11 01:22:42] 2025-10-11 08:21:51,702 | INFO     | . get job = 0 s
[2025-10-11 01:22:42] 2025-10-11 08:21:51,703 | INFO     | . initial setup = 6 s
[2025-10-11 01:22:42] 2025-10-11 08:21:51,703 | INFO     | . payload setup = 26 s
[2025-10-11 01:22:42] 2025-10-11 08:21:51,703 | INFO     | . stage-in = 0 s
[2025-10-11 01:22:42] 2025-10-11 08:21:51,703 | INFO     | . payload execution = 104 s
[2025-10-11 01:22:42] 2025-10-11 08:21:51,703 | INFO     | . stage-out = 1 s
[2025-10-11 01:22:42] 2025-10-11 08:21:51,703 | INFO     | . log creation = 0 s
[2025-10-11 01:22:42] 2025-10-11 08:21:51,703 | INFO     | ..............................
[2025-10-11 01:22:42] 2025-10-11 08:21:51,703 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-11 01:22:42] 2025-10-11 08:21:51,703 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6838118415/pilotlog.txt
[2025-10-11 01:22:42] 2025-10-11 08:21:51,730 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-10-11 01:22:42] - Log from pilotlog.txt -
[2025-10-11 01:22:42] 2025-10-11 08:21:51,653 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6838118415/memory_monitor_summary.json (trf name=prmon)
[2025-10-11 01:22:42] 2025-10-11 08:21:51,653 | INFO     | extracted standard info from prmon json
[2025-10-11 01:22:42] 2025-10-11 08:21:51,654 | INFO     | extracted standard memory fields from prmon json
[2025-10-11 01:22:42] 2025-10-11 08:21:51,654 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-11 01:22:42] 2025-10-11 08:21:51,701 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-11 01:22:42] 2025-10-11 08:21:51,701 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-11 01:22:42] 2025-10-11 08:21:51,702 | WARNING  | wrong length of table data, x=[1760170683.0, 1760170744.0], y=[1959.0, 475002.0] (must be same and length>=4)
[2025-10-11 01:22:42] 2025-10-11 08:21:51,702 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-10-11 01:22:42] 2025-10-11 08:21:51,702 | INFO     | ..............................
[2025-10-11 01:22:42] 2025-10-11 08:21:51,702 | INFO     | . Timing measurements:
[2025-10-11 01:22:42] 2025-10-11 08:21:51,702 | INFO     | . get job = 0 s
[2025-10-11 01:22:42] 2025-10-11 08:21:51,703 | INFO     | . initial setup = 6 s
[2025-10-11 01:22:42] 2025-10-11 08:21:51,703 | INFO     | . payload setup = 26 s
[2025-10-11 01:22:42] 2025-10-11 08:21:51,703 | INFO     | . stage-in = 0 s
[2025-10-11 01:22:42] 2025-10-11 08:21:51,703 | INFO     | . payload execution = 104 s
[2025-10-11 01:22:42] 2025-10-11 08:21:51,703 | INFO     | . stage-out = 1 s
[2025-10-11 01:22:42] 2025-10-11 08:21:51,703 | INFO     | . log creation = 0 s
[2025-10-11 01:22:42] 2025-10-11 08:21:51,703 | INFO     | ..............................
[2025-10-11 01:22:42] 2025-10-11 08:21:51,703 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-11 01:22:42] 2025-10-11 08:21:51,703 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6838118415/pilotlog.txt
[2025-10-11 01:22:42] 2025-10-11 08:21:51,735 | WARNING  | 
[2025-10-11 01:22:42] [begin log extracts]
[2025-10-11 01:22:42] - Log from pilotlog.txt -
[2025-10-11 01:22:42] 2025-10-11 08:21:51,653 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6838118415/memory_monitor_summary.json (trf name=prmon)
[2025-10-11 01:22:42] 2025-10-11 08:21:51,653 | INFO     | extracted standard info from prmon json
[2025-10-11 01:22:42] 2025-10-11 08:21:51,654 | INFO     | extracted standard memory fields from prmon json
[2025-10-11 01:22:42] 2025-10-11 08:21:51,654 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-11 01:22:42] 2025-10-11 08:21:51,701 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-11 01:22:42] 2025-10-11 08:21:51,701 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-11 01:22:42] 2025-10-11 08:21:51,702 | WARNING  | wrong length of table data, x=[1760170683.0, 1760170744.0], y=[1959.0, 475002.0] (must be same and length>=4)
[2025-10-11 01:22:42] 2025-10-11 08:21:51,702 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-10-11 01:22:42] 2025-10-11 08:21:51,702 | INFO     | ..............................
[2025-10-11 01:22:42] 2025-10-11 08:21:51,702 | INFO     | . Timing measurements:
[2025-10-11 01:22:42] 2025-10-11 08:21:51,702 | INFO     | . get job = 0 s
[2025-10-11 01:22:42] 2025-10-11 08:21:51,703 | INFO     | . initial setup = 6 s
[2025-10-11 01:22:42] 2025-10-11 08:21:51,703 | INFO     | . payload setup = 26 s
[2025-10-11 01:22:42] 2025-10-11 08:21:51,703 | INFO     | . stage-in = 0 s
[2025-10-11 01:22:42] 2025-10-11 08:21:51,703 | INFO     | . payload execution = 104 s
[2025-10-11 01:22:42] 2025-10-11 08:21:51,703 | INFO     | . stage-out = 1 s
[2025-10-11 01:22:42] 2025-10-11 08:21:51,703 | INFO     | . log creation = 0 s
[2025-10-11 01:22:42] 2025-10-11 08:21:51,703 | INFO     | ..............................
[2025-10-11 01:22:42] 2025-10-11 08:21:51,703 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-11 01:22:42] 2025-10-11 08:21:51,703 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6838118415/pilotlog.txt
[2025-10-11 01:22:42] [end log extracts]
[2025-10-11 01:22:42] 2025-10-11 08:21:51,735 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-10-11 01:22:42] 2025-10-11 08:21:51,737 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-10-11 01:22:42] 2025-10-11 08:21:52,204 | INFO     | 
[2025-10-11 01:22:42] 2025-10-11 08:21:52,205 | INFO     | job summary report
[2025-10-11 01:22:42] 2025-10-11 08:21:52,205 | INFO     | --------------------------------------------------
[2025-10-11 01:22:42] 2025-10-11 08:21:52,205 | INFO     | PanDA job id: 6838118415
[2025-10-11 01:22:42] 2025-10-11 08:21:52,205 | INFO     | task id: 46676269
[2025-10-11 01:22:42] 2025-10-11 08:21:52,206 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-10-11 01:19:22,012 CRITICAL Transform executor raised TransformValidationExceptio
[2025-10-11 01:22:42] 2025-10-11 08:21:52,206 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-11 01:22:42] 2025-10-11 08:21:52,206 | INFO     | pilot state: failed 
[2025-10-11 01:22:42] 2025-10-11 08:21:52,206 | INFO     | transexitcode: 65
[2025-10-11 01:22:42] 2025-10-11 08:21:52,206 | INFO     | exeerrorcode: 65
[2025-10-11 01:22:42] 2025-10-11 08:21:52,206 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2025-10-11 01:22:42] 2025-10-11 08:21:52,206 | INFO     | exitcode: 65
[2025-10-11 01:22:42] 2025-10-11 08:21:52,206 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2025-10-11 01:22:42] 2025-10-11 08:21:52,206 | INFO     | cpuconsumptiontime: 20 s
[2025-10-11 01:22:42] 2025-10-11 08:21:52,206 | INFO     | nevents: 0
[2025-10-11 01:22:42] 2025-10-11 08:21:52,206 | INFO     | neventsw: 0
[2025-10-11 01:22:42] 2025-10-11 08:21:52,206 | INFO     | pid: 2016519
[2025-10-11 01:22:42] 2025-10-11 08:21:52,206 | INFO     | pgrp: 2016519
[2025-10-11 01:22:42] 2025-10-11 08:21:52,206 | INFO     | corecount: 8
[2025-10-11 01:22:42] 2025-10-11 08:21:52,206 | INFO     | event service: False
[2025-10-11 01:22:42] 2025-10-11 08:21:52,207 | INFO     | sizes: {0: 2348632, 1: 2348831, 12: 2348831, 19: 2349121, 23: 2349149, 135: 2372503, 136: 2376823, 273: 2376961}
[2025-10-11 01:22:42] 2025-10-11 08:21:52,207 | INFO     | --------------------------------------------------
[2025-10-11 01:22:42] 2025-10-11 08:21:52,207 | INFO     | 
[2025-10-11 01:22:42] 2025-10-11 08:21:52,207 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-10-11 01:22:42] 2025-10-11 08:21:52,245 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-11 01:22:42] 2025-10-11 08:21:52,245 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-11 01:22:42] 2025-10-11 08:21:52,245 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-11 01:22:42] 2025-10-11 08:21:52,245 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-11 01:22:42] 2025-10-11 08:21:52,245 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-11 01:22:42] 2025-10-11 08:21:52,245 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-11 01:22:42] 2025-10-11 08:21:52,245 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-11 01:22:42] 2025-10-11 08:21:52,245 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-11 01:22:42] 2025-10-11 08:21:52,245 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-11 01:22:42] 2025-10-11 08:21:52,246 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-11 01:22:42] 2025-10-11 08:21:52,246 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-11 01:22:42] 2025-10-11 08:21:52,246 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-11 01:22:42] 2025-10-11 08:21:52,246 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-11 01:22:42] 2025-10-11 08:21:52,246 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-11 01:22:42] 2025-10-11 08:21:52,246 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-11 01:22:42] 2025-10-11 08:21:52,246 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-11 01:22:42] 2025-10-11 08:21:52,246 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-11 01:22:42] 2025-10-11 08:21:52,246 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-11 01:22:42] 2025-10-11 08:21:52,246 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-11 01:22:42] 2025-10-11 08:21:52,246 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-11 01:22:42] 2025-10-11 08:21:52,246 | INFO     | job 6838118415 has completed (purged errors)
[2025-10-11 01:22:42] 2025-10-11 08:21:52,247 | INFO     | overall cleanup function is called
[2025-10-11 01:22:42] 2025-10-11 08:21:53,253 | INFO     | --- collectZombieJob: --- 10, [2016519]
[2025-10-11 01:22:42] 2025-10-11 08:21:53,253 | INFO     | zombie collector waiting for pid 2016519
[2025-10-11 01:22:42] 2025-10-11 08:21:53,253 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-11 01:22:42] 2025-10-11 08:21:53,253 | INFO     | collected zombie processes
[2025-10-11 01:22:42] 2025-10-11 08:21:53,253 | INFO     | will attempt to kill all subprocesses of pid=2016519
[2025-10-11 01:22:42] 2025-10-11 08:21:53,712 | INFO     | process IDs to be killed: [2016519] (in reverse order)
[2025-10-11 01:22:42] 2025-10-11 08:21:53,872 | WARNING  | found no corresponding commands to process id(s)
[2025-10-11 01:22:42] 2025-10-11 08:21:53,874 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-11 01:22:42] 2025-10-11 08:21:53,927 | INFO     | did not find any defunct processes belonging to 2016519
[2025-10-11 01:22:42] 2025-10-11 08:21:53,938 | INFO     | did not find any defunct processes belonging to 2016519
[2025-10-11 01:22:42] 2025-10-11 08:21:53,938 | INFO     | ready for new job
[2025-10-11 01:22:42] 2025-10-11 08:21:53,938 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-11 01:22:42] 2025-10-11 08:21:53,940 | INFO     | ***************************************
[2025-10-11 01:22:42] 2025-10-11 08:21:53,940 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-11 01:22:42] 2025-10-11 08:21:53,940 | INFO     | ***************************************
[2025-10-11 01:22:42] 2025-10-11 08:21:53,940 | INFO     | 
[2025-10-11 01:22:42] 2025-10-11 08:21:53,942 | INFO     | architecture information:
[2025-10-11 01:22:42] 2025-10-11 08:21:53,964 | INFO     | executing command: cat /etc/os-release
[2025-10-11 01:22:42] 2025-10-11 08:21:53,990 | INFO     | cat /etc/os-release:
[2025-10-11 01:22:42] NAME="CentOS Linux"
[2025-10-11 01:22:42] VERSION="7 (Core)"
[2025-10-11 01:22:42] ID="centos"
[2025-10-11 01:22:42] ID_LIKE="rhel fedora"
[2025-10-11 01:22:42] VERSION_ID="7"
[2025-10-11 01:22:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-11 01:22:42] ANSI_COLOR="0;31"
[2025-10-11 01:22:42] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-11 01:22:42] HOME_URL="https://www.centos.org/"
[2025-10-11 01:22:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-11 01:22:42] 
[2025-10-11 01:22:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-11 01:22:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-11 01:22:42] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-11 01:22:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-11 01:22:42] 
[2025-10-11 01:22:42] 2025-10-11 08:21:53,990 | INFO     | ***************************************
[2025-10-11 01:22:42] 2025-10-11 08:21:54,492 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-10-11 01:22:42] 2025-10-11 08:21:54,524 | INFO     | sufficient remaining disk space (1371308818432 B)
[2025-10-11 01:22:42] 2025-10-11 08:21:54,525 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-11 01:22:42] 2025-10-11 08:21:54,525 | INFO     | current server update state: UPDATING_FINAL
[2025-10-11 01:22:42] 2025-10-11 08:21:54,525 | INFO     | update_server=False
[2025-10-11 01:22:42] 2025-10-11 08:21:54,525 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-11 01:22:42] 2025-10-11 08:21:54,526 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-11 01:22:42] 2025-10-11 08:21:54,526 | INFO     | aborting loop
[2025-10-11 01:22:42] 2025-10-11 08:21:54,526 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-11 01:22:42] 2025-10-11 08:21:54,590 | INFO     | all payload control threads have been joined
[2025-10-11 01:22:42] 2025-10-11 08:21:54,843 | INFO     | all job control threads have been joined
[2025-10-11 01:22:42] 2025-10-11 08:21:55,181 | INFO     | all data control threads have been joined
[2025-10-11 01:22:42] 2025-10-11 08:21:55,531 | INFO     | [job] retrieve thread has finished
[2025-10-11 01:22:42] 2025-10-11 08:21:55,533 | INFO     | [job] job monitor thread has finished
[2025-10-11 01:22:42] 2025-10-11 08:21:55,597 | INFO     | [payload] control thread has finished
[2025-10-11 01:22:42] 2025-10-11 08:21:55,849 | INFO     | [job] control thread has finished
[2025-10-11 01:22:42] 2025-10-11 08:21:56,174 | INFO     | [payload] validate_post thread has finished
[2025-10-11 01:22:42] 2025-10-11 08:21:56,189 | INFO     | [data] control thread has finished
[2025-10-11 01:22:42] 2025-10-11 08:21:56,251 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-11 01:22:42] 2025-10-11 08:21:56,302 | INFO     | [payload] validate_pre thread has finished
[2025-10-11 01:22:42] 2025-10-11 08:21:56,381 | INFO     | [data] copytool_in thread has finished
[2025-10-11 01:22:42] 2025-10-11 08:21:56,455 | INFO     | [job] validate thread has finished
[2025-10-11 01:22:42] 2025-10-11 08:21:56,533 | INFO     | [data] copytool_out thread has finished
[2025-10-11 01:22:42] 2025-10-11 08:21:56,534 | INFO     | [job] create_data_payload thread has finished
[2025-10-11 01:22:42] 2025-10-11 08:21:56,748 | INFO     | [payload] execute_payloads thread has finished
[2025-10-11 01:22:42] 2025-10-11 08:21:56,903 | INFO     | [payload] failed_post thread has finished
[2025-10-11 01:22:42] 2025-10-11 08:21:56,933 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-11 01:22:42] 2025-10-11 08:21:57,072 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-11 01:22:42] 2025-10-11 08:21:57,939 | INFO     | [job] queue monitor thread has finished
[2025-10-11 01:22:42] 2025-10-11 08:22:01,080 | INFO     | [data] queue_monitor thread has finished
[2025-10-11 01:22:42] 2025-10-11 08:22:24,726 | INFO     | PID=2009809 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-11 01:22:42] 2025-10-11 08:22:24,727 | INFO     | .. there are 26 such processes running
[2025-10-11 01:22:42] 2025-10-11 08:22:24,727 | INFO     | found 0 job(s) in 20 queues
[2025-10-11 01:22:42] 2025-10-11 08:22:24,727 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-11 01:22:42] 2025-10-11 08:22:24,727 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-11 01:22:42] 2025-10-11 08:22:36,428 | INFO     | [monitor] cgroup control has ended
[2025-10-11 01:22:42] 2025-10-11 08:22:36,566 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140153167284032)>', '<ExcThread(monitor, started 140152491992832)>']
[2025-10-11 01:22:42] 2025-10-11 08:22:36,801 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-11 01:22:42] 2025-10-11 08:22:36,802 | INFO     | [monitor] control thread has ended
[2025-10-11 01:22:42] 2025-10-11 08:22:41,592 | INFO     | all workflow threads have been joined
[2025-10-11 01:22:42] 2025-10-11 08:22:41,592 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-11 01:22:42] 2025-10-11 08:22:41,592 | INFO     | traces error code: 0
[2025-10-11 01:22:42] 2025-10-11 08:22:41,593 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-11 01:22:42] 2025-10-11 08:22:41,955 [wrapper] ==== pilot stdout END ====
[2025-10-11 01:22:42] 2025-10-11 08:22:41,967 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-11 01:22:42] 2025-10-11 08:22:41,973 [wrapper] pilotpid: 2009809
[2025-10-11 01:22:42] 2025-10-11 08:22:42,007 [wrapper] Pilot exit status: 0
[2025-10-11 01:22:42] 2025-10-11 08:22:42,066 [wrapper] pandaids: 6838118415
[2025-10-11 01:22:42] 2025-10-11 08:22:42,417 [wrapper] cleanup supervisor_pilot 2009815 2009810
[2025-10-11 01:22:42] 2025-10-11 08:22:42,433 [wrapper] Test setup, not cleaning
[2025-10-11 01:22:42] 2025-10-11 08:22:42,448 [wrapper] apfmon messages muted
[2025-10-11 01:22:42] 2025-10-11 08:22:42,479 [wrapper] ==== wrapper stdout END ====
[2025-10-11 01:22:42] 2025-10-11 08:22:42,503 [wrapper] ==== wrapper stderr END ====
[2025-10-11 01:22:42]  *** Error codes and diagnostics ***
[2025-10-11 01:22:42]     "exeErrorCode": 65,
[2025-10-11 01:22:42]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2025-10-11 01:22:42]     "pilotErrorCode": 1305,
[2025-10-11 01:22:42]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2025-10-11 01:22:42]  *** Listing of results directory ***
[2025-10-11 01:22:42] total 217844
[2025-10-11 01:22:42] -rw-r--r--. 1 boinc boinc    557409 Oct 10 22:36 pilot3.tar.gz
[2025-10-11 01:22:42] -rwx------. 1 boinc boinc     36292 Oct 10 22:52 runpilot2-wrapper.sh
[2025-10-11 01:22:42] -rw-r--r--. 1 boinc boinc      5112 Oct 10 22:52 queuedata.json
[2025-10-11 01:22:42] -rw-r--r--. 1 boinc boinc       100 Oct 11 01:15 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-11 01:22:42] -rwxr-xr-x. 1 boinc boinc      7986 Oct 11 01:15 run_atlas
[2025-10-11 01:22:42] -rw-r--r--. 1 boinc boinc       105 Oct 11 01:15 job.xml
[2025-10-11 01:22:42] -rw-r--r--. 1 boinc boinc      6444 Oct 11 01:15 init_data.xml
[2025-10-11 01:22:42] -rw-r--r--. 2 boinc boinc 218922597 Oct 11 01:15 EVNT.46676267._002102.pool.root.1
[2025-10-11 01:22:42] -rw-r--r--. 2 boinc boinc     15120 Oct 11 01:15 start_atlas.sh
[2025-10-11 01:22:42] drwxrwx--x. 2 boinc boinc      4096 Oct 11 01:15 shared
[2025-10-11 01:22:42] -rw-r--r--. 2 boinc boinc    569676 Oct 11 01:15 input.tar.gz
[2025-10-11 01:22:42] -rw-r--r--. 1 boinc boinc         0 Oct 11 01:15 boinc_lockfile
[2025-10-11 01:22:42] -rw-r--r--. 1 boinc boinc      2549 Oct 11 01:15 pandaJob.out
[2025-10-11 01:22:42] -rw-------. 1 boinc boinc    975509 Oct 11 01:16 agis_schedconf.cvmfs.json
[2025-10-11 01:22:42] -rw-------. 1 boinc boinc   1560580 Oct 11 01:16 agis_ddmendpoints.agis.ALL.json
[2025-10-11 01:22:42] drwx------. 5 boinc boinc      4096 Oct 11 01:16 pilot3
[2025-10-11 01:22:42] -rw-r--r--. 1 boinc boinc       524 Oct 11 01:19 boinc_task_state.xml
[2025-10-11 01:22:42] -rw-------. 1 boinc boinc       983 Oct 11 01:19 memory_monitor_summary.json
[2025-10-11 01:22:42] -rw-------. 1 boinc boinc     22537 Oct 11 01:19 log.46676269._052302.job.log.tgz.1
[2025-10-11 01:22:42] -rw-------. 1 boinc boinc        95 Oct 11 01:21 pilot_heartbeat.json
[2025-10-11 01:22:42] -rw-------. 1 boinc boinc      8398 Oct 11 01:21 heartbeat.json
[2025-10-11 01:22:42] -rw-------. 1 boinc boinc      4823 Oct 11 01:22 pilotlog.txt
[2025-10-11 01:22:42] -rw-r--r--. 1 boinc boinc      8192 Oct 11 01:22 boinc_mmap_file
[2025-10-11 01:22:42] -rw-r--r--. 1 boinc boinc        23 Oct 11 01:22 wrapper_checkpoint.txt
[2025-10-11 01:22:42] -rw-------. 1 boinc boinc    100233 Oct 11 01:22 log.46676269._052302.job.log.1
[2025-10-11 01:22:42] -rw-------. 1 boinc boinc       188 Oct 11 01:22 output.list
[2025-10-11 01:22:42] -rw-r--r--. 1 boinc boinc       620 Oct 11 01:22 runtime_log
[2025-10-11 01:22:42] -rw-------. 1 boinc boinc    143360 Oct 11 01:22 result.tar.gz
[2025-10-11 01:22:42] -rw-r--r--. 1 boinc boinc      8526 Oct 11 01:22 runtime_log.err
[2025-10-11 01:22:42] -rw-------. 1 boinc boinc       647 Oct 11 01:22 jowKDmmhhR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmKYfNDmfmcjrn.diag
[2025-10-11 01:22:42] -rw-r--r--. 1 boinc boinc     21859 Oct 11 01:22 stderr.txt
[2025-10-11 01:22:42] No HITS result produced
[2025-10-11 01:22:42]  *** Contents of shared directory: ***
[2025-10-11 01:22:42] total 214512
[2025-10-11 01:22:42] -rw-r--r--. 2 boinc boinc 218922597 Oct 11 01:15 ATLAS.root_0
[2025-10-11 01:22:42] -rw-r--r--. 2 boinc boinc     15120 Oct 11 01:15 start_atlas.sh
[2025-10-11 01:22:42] -rw-r--r--. 2 boinc boinc    569676 Oct 11 01:15 input.tar.gz
[2025-10-11 01:22:42] -rw-------. 1 boinc boinc    143360 Oct 11 01:22 result.tar.gz
01:22:44 (2006062): run_atlas exited; CPU time 31.376703
01:22:44 (2006062): called boinc_finish(0)

</stderr_txt>
]]>

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