Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
06:56:54 (2038734): wrapper (7.7.26015): starting
06:56:54 (2038734): wrapper: running run_atlas (--nthreads 11)
[2025-10-11 06:56:54] Arguments: --nthreads 11
[2025-10-11 06:56:54] Threads: 11
[2025-10-11 06:56:54] Checking for CVMFS
[2025-10-11 06:56:54] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 06:56:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 06:56:54] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 06:56:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 06:56:55] 2.13.2.0 360960 6983 199100 151581 1 355 23638280 32935936 25254 16776704 0 20161382 99.622 20725833 29364 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-11 06:56:55] CVMFS is ok
[2025-10-11 06:56:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 06:56:55] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 06:56:55] Further information can be found at the LHC@home message board.
[2025-10-11 06:56:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 06:56:55] Checking for apptainer binary...
[2025-10-11 06:56:55] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 06:56:55] Running /usr/bin/apptainer --version
[2025-10-11 06:56:55] apptainer version 1.4.3-1.el9
[2025-10-11 06:56:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 06:56:56] c-5-1.aglt2.org
[2025-10-11 06:56:56] apptainer works
[2025-10-11 06:56:56] Set ATHENA_PROC_NUMBER=11
[2025-10-11 06:56:56] Set ATHENA_CORE_NUMBER=11
[2025-10-11 06:56:56] Starting ATLAS job with PandaID=6837961965
[2025-10-11 06:56:56] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
09:32:05 (2454197): wrapper (7.7.26015): starting
09:32:05 (2454197): wrapper: running run_atlas (--nthreads 10)
[2025-10-11 09:32:05] Arguments: --nthreads 10
[2025-10-11 09:32:05] Threads: 10
[2025-10-11 09:32:05] This job has been restarted, cleaning up previous attempt
[2025-10-11 09:32:05] Checking for CVMFS
[2025-10-11 09:32:05] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 09:32:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 09:32:05] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 09:32:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 09:32:05] 2.13.2.0 360960 7138 189476 151585 2 56 24566967 32935937 25718 16776704 0 20566550 99.627 20979220 29382 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-11 09:32:05] CVMFS is ok
[2025-10-11 09:32:05] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 09:32:05] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 09:32:05] Further information can be found at the LHC@home message board.
[2025-10-11 09:32:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 09:32:05] Checking for apptainer binary...
[2025-10-11 09:32:05] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 09:32:05] Running /usr/bin/apptainer --version
[2025-10-11 09:32:05] apptainer version 1.4.3-1.el9
[2025-10-11 09:32:05] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 09:32:06] c-5-1.aglt2.org
[2025-10-11 09:32:06] apptainer works
[2025-10-11 09:32:06] Set ATHENA_PROC_NUMBER=10
[2025-10-11 09:32:06] Set ATHENA_CORE_NUMBER=10
[2025-10-11 09:32:06] Starting ATLAS job with PandaID=6837961965
[2025-10-11 09:32:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-11 12:36:46]  *** The last 200 lines of the pilot log: ***
[2025-10-11 12:36:46] 2025-10-11 16:36:13,522 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-11 12:36:46] 2025-10-11 16:36:13,522 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-11 12:36:46] 2025-10-11 16:36:13,526 | INFO     | fitting pss+swap vs Time
[2025-10-11 12:36:46] 2025-10-11 16:36:13,526 | INFO     | sum of square deviations: 1838627161.4806633
[2025-10-11 12:36:46] 2025-10-11 16:36:13,527 | INFO     | sum of deviations: 4290522852.2872944
[2025-10-11 12:36:46] 2025-10-11 16:36:13,527 | INFO     | mean x: 1760195056.2928176
[2025-10-11 12:36:46] 2025-10-11 16:36:13,527 | INFO     | mean y: 2372501.2209944753
[2025-10-11 12:36:46] 2025-10-11 16:36:13,528 | INFO     | -- intersect: -4105125349.199987
[2025-10-11 12:36:46] 2025-10-11 16:36:13,528 | INFO     | intersect: -4105125349.199987
[2025-10-11 12:36:46] 2025-10-11 16:36:13,528 | INFO     | chi2: 2.307699445661309
[2025-10-11 12:36:46] 2025-10-11 16:36:13,529 | INFO     | sum of square deviations: 1690425098.6363673
[2025-10-11 12:36:46] 2025-10-11 16:36:13,530 | INFO     | sum of deviations: 16177586707.295443
[2025-10-11 12:36:46] 2025-10-11 16:36:13,530 | INFO     | mean x: 1760194903.7954545
[2025-10-11 12:36:46] 2025-10-11 16:36:13,530 | INFO     | mean y: 2384475.1193181816
[2025-10-11 12:36:46] 2025-10-11 16:36:13,530 | INFO     | -- intersect: -16842908286.364948
[2025-10-11 12:36:46] 2025-10-11 16:36:13,530 | INFO     | intersect: -16842908286.364948
[2025-10-11 12:36:46] 2025-10-11 16:36:13,530 | INFO     | chi2: 1.5894400012007097
[2025-10-11 12:36:46] 2025-10-11 16:36:13,531 | INFO     | current chi2=1.5894400012007097 (change=31.124479654878556 %)
[2025-10-11 12:36:46] 2025-10-11 16:36:13,531 | INFO     | sum of square deviations: 1550397889.3801153
[2025-10-11 12:36:46] 2025-10-11 16:36:13,532 | INFO     | sum of deviations: 15673285026.994156
[2025-10-11 12:36:46] 2025-10-11 16:36:13,532 | INFO     | mean x: 1760194751.2923977
[2025-10-11 12:36:46] 2025-10-11 16:36:13,532 | INFO     | mean y: 2383930.380116959
[2025-10-11 12:36:46] 2025-10-11 16:36:13,532 | INFO     | -- intersect: -17791779896.207115
[2025-10-11 12:36:46] 2025-10-11 16:36:13,532 | INFO     | intersect: -17791779896.207115
[2025-10-11 12:36:46] 2025-10-11 16:36:13,533 | INFO     | chi2: 1.5906085401498373
[2025-10-11 12:36:46] 2025-10-11 16:36:13,533 | INFO     | current chi2=1.5906085401498373 (change=-0.0735189090651335 %)
[2025-10-11 12:36:46] 2025-10-11 16:36:13,533 | INFO     | right removable region: 170
[2025-10-11 12:36:46] 2025-10-11 16:36:13,533 | INFO     | sum of square deviations: 1690403566.0397778
[2025-10-11 12:36:46] 2025-10-11 16:36:13,534 | INFO     | sum of deviations: -23476237353.124992
[2025-10-11 12:36:46] 2025-10-11 16:36:13,534 | INFO     | mean x: 1760195208.8011363
[2025-10-11 12:36:46] 2025-10-11 16:36:13,534 | INFO     | mean y: 2400760.625
[2025-10-11 12:36:46] 2025-10-11 16:36:13,535 | INFO     | -- intersect: 24447900841.09306
[2025-10-11 12:36:46] 2025-10-11 16:36:13,535 | INFO     | intersect: 24447900841.09306
[2025-10-11 12:36:46] 2025-10-11 16:36:13,535 | INFO     | chi2: 0.8389441548573074
[2025-10-11 12:36:46] 2025-10-11 16:36:13,535 | INFO     | current chi2=0.8389441548573074 (change=63.64586573721282 %)
[2025-10-11 12:36:46] 2025-10-11 16:36:13,535 | INFO     | sum of square deviations: 1550376784.1871364
[2025-10-11 12:36:46] 2025-10-11 16:36:13,536 | INFO     | sum of deviations: -24027596022.538002
[2025-10-11 12:36:46] 2025-10-11 16:36:13,537 | INFO     | mean x: 1760195361.3040936
[2025-10-11 12:36:46] 2025-10-11 16:36:13,537 | INFO     | mean y: 2401304.625730994
[2025-10-11 12:36:46] 2025-10-11 16:36:13,537 | INFO     | -- intersect: 27281746231.307194
[2025-10-11 12:36:46] 2025-10-11 16:36:13,537 | INFO     | intersect: 27281746231.307194
[2025-10-11 12:36:46] 2025-10-11 16:36:13,537 | INFO     | chi2: 0.8192693295246488
[2025-10-11 12:36:46] 2025-10-11 16:36:13,537 | INFO     | current chi2=0.8192693295246488 (change=2.3451889161806054 %)
[2025-10-11 12:36:46] 2025-10-11 16:36:13,537 | INFO     | left removable region: 20
[2025-10-11 12:36:46] 2025-10-11 16:36:13,538 | INFO     | sum of square deviations: 1046435985.3933333
[2025-10-11 12:36:46] 2025-10-11 16:36:13,538 | INFO     | sum of deviations: -6115183587.140002
[2025-10-11 12:36:46] 2025-10-11 16:36:13,539 | INFO     | mean x: 1760195330.8066666
[2025-10-11 12:36:46] 2025-10-11 16:36:13,539 | INFO     | mean y: 2407568.34
[2025-10-11 12:36:46] 2025-10-11 16:36:13,539 | INFO     | -- intersect: 10288672325.436884
[2025-10-11 12:36:46] 2025-10-11 16:36:13,539 | INFO     | intersect: 10288672325.436884
[2025-10-11 12:36:46] 2025-10-11 16:36:13,539 | INFO     | chi2: 0.06652499402054837
[2025-10-11 12:36:46] 2025-10-11 16:36:13,539 | INFO     | -- intersect: 10288672325.436884
[2025-10-11 12:36:46] 2025-10-11 16:36:13,540 | INFO     | current memory leak: -5.84 B/s (using 150 data points, chi2=0.07)
[2025-10-11 12:36:46] 2025-10-11 16:36:13,540 | INFO     | could have reported an average CPU frequency of 2626 MHz (10 samples)
[2025-10-11 12:36:46] 2025-10-11 16:36:13,540 | INFO     | ..............................
[2025-10-11 12:36:46] 2025-10-11 16:36:13,541 | INFO     | . Timing measurements:
[2025-10-11 12:36:46] 2025-10-11 16:36:13,541 | INFO     | . get job = 0 s
[2025-10-11 12:36:46] 2025-10-11 16:36:13,541 | INFO     | . initial setup = 1 s
[2025-10-11 12:36:46] 2025-10-11 16:36:13,541 | INFO     | . payload setup = 6 s
[2025-10-11 12:36:46] 2025-10-11 16:36:13,541 | INFO     | . stage-in = 0 s
[2025-10-11 12:36:46] 2025-10-11 16:36:13,541 | INFO     | . payload execution = 10994 s
[2025-10-11 12:36:46] 2025-10-11 16:36:13,541 | INFO     | . stage-out = 2 s
[2025-10-11 12:36:46] 2025-10-11 16:36:13,541 | INFO     | . log creation = 0 s
[2025-10-11 12:36:46] 2025-10-11 16:36:13,541 | INFO     | ..............................
[2025-10-11 12:36:46] 2025-10-11 16:36:13,671 | INFO     | 
[2025-10-11 12:36:46] 2025-10-11 16:36:13,672 | INFO     | job summary report
[2025-10-11 12:36:46] 2025-10-11 16:36:13,672 | INFO     | --------------------------------------------------
[2025-10-11 12:36:46] 2025-10-11 16:36:13,672 | INFO     | PanDA job id: 6837961965
[2025-10-11 12:36:46] 2025-10-11 16:36:13,672 | INFO     | task id: 46676269
[2025-10-11 12:36:46] 2025-10-11 16:36:13,672 | INFO     | errors: (none)
[2025-10-11 12:36:46] 2025-10-11 16:36:13,672 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-11 12:36:46] 2025-10-11 16:36:13,672 | INFO     | pilot state: finished 
[2025-10-11 12:36:46] 2025-10-11 16:36:13,672 | INFO     | transexitcode: 0
[2025-10-11 12:36:46] 2025-10-11 16:36:13,673 | INFO     | exeerrorcode: 0
[2025-10-11 12:36:46] 2025-10-11 16:36:13,673 | INFO     | exeerrordiag: 
[2025-10-11 12:36:46] 2025-10-11 16:36:13,673 | INFO     | exitcode: 0
[2025-10-11 12:36:46] 2025-10-11 16:36:13,673 | INFO     | exitmsg: OK
[2025-10-11 12:36:46] 2025-10-11 16:36:13,673 | INFO     | cpuconsumptiontime: 48541 s
[2025-10-11 12:36:46] 2025-10-11 16:36:13,673 | INFO     | nevents: 400
[2025-10-11 12:36:46] 2025-10-11 16:36:13,673 | INFO     | neventsw: 0
[2025-10-11 12:36:46] 2025-10-11 16:36:13,673 | INFO     | pid: 2476061
[2025-10-11 12:36:46] 2025-10-11 16:36:13,673 | INFO     | pgrp: 2476061
[2025-10-11 12:36:46] 2025-10-11 16:36:13,673 | INFO     | corecount: 10
[2025-10-11 12:36:46] 2025-10-11 16:36:13,674 | INFO     | event service: False
[2025-10-11 12:36:46] 2025-10-11 16:36:13,674 | INFO     | sizes: {0: 2348857, 4: 2349119, 11: 2349147, 11004: 2378466, 11008: 2387464, 11012: 2387520, 11020: 2387842}
[2025-10-11 12:36:46] 2025-10-11 16:36:13,674 | INFO     | --------------------------------------------------
[2025-10-11 12:36:46] 2025-10-11 16:36:13,674 | INFO     | 
[2025-10-11 12:36:46] 2025-10-11 16:36:13,674 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-11 12:36:46] 2025-10-11 16:36:13,736 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-11 12:36:46] 2025-10-11 16:36:13,736 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-11 12:36:46] 2025-10-11 16:36:13,736 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-11 12:36:46] 2025-10-11 16:36:13,736 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-11 12:36:46] 2025-10-11 16:36:13,736 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-11 12:36:46] 2025-10-11 16:36:13,736 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-11 12:36:46] 2025-10-11 16:36:13,737 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-11 12:36:46] 2025-10-11 16:36:13,737 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-11 12:36:46] 2025-10-11 16:36:13,737 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-11 12:36:46] 2025-10-11 16:36:13,737 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-11 12:36:46] 2025-10-11 16:36:13,737 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-11 12:36:46] 2025-10-11 16:36:13,737 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-11 12:36:46] 2025-10-11 16:36:13,737 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-11 12:36:46] 2025-10-11 16:36:13,738 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-11 12:36:46] 2025-10-11 16:36:13,738 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-11 12:36:46] 2025-10-11 16:36:13,738 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-11 12:36:46] 2025-10-11 16:36:13,738 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-11 12:36:46] 2025-10-11 16:36:13,738 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-11 12:36:46] 2025-10-11 16:36:13,738 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-11 12:36:46] 2025-10-11 16:36:13,738 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-11 12:36:46] 2025-10-11 16:36:13,738 | INFO     | job 6837961965 has completed (purged errors)
[2025-10-11 12:36:46] 2025-10-11 16:36:13,739 | INFO     | overall cleanup function is called
[2025-10-11 12:36:46] 2025-10-11 16:36:14,751 | INFO     | --- collectZombieJob: --- 10, [2476061]
[2025-10-11 12:36:46] 2025-10-11 16:36:14,752 | INFO     | zombie collector waiting for pid 2476061
[2025-10-11 12:36:46] 2025-10-11 16:36:14,752 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-11 12:36:46] 2025-10-11 16:36:14,752 | INFO     | collected zombie processes
[2025-10-11 12:36:46] 2025-10-11 16:36:14,752 | INFO     | will attempt to kill all subprocesses of pid=2476061
[2025-10-11 12:36:46] 2025-10-11 16:36:15,270 | INFO     | process IDs to be killed: [2476061] (in reverse order)
[2025-10-11 12:36:46] 2025-10-11 16:36:15,406 | WARNING  | found no corresponding commands to process id(s)
[2025-10-11 12:36:46] 2025-10-11 16:36:15,407 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-11 12:36:46] 2025-10-11 16:36:15,429 | INFO     | did not find any defunct processes belonging to 2476061
[2025-10-11 12:36:46] 2025-10-11 16:36:15,444 | INFO     | did not find any defunct processes belonging to 2476061
[2025-10-11 12:36:46] 2025-10-11 16:36:15,444 | INFO     | ready for new job
[2025-10-11 12:36:46] 2025-10-11 16:36:15,444 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-11 12:36:46] 2025-10-11 16:36:15,447 | INFO     | ***************************************
[2025-10-11 12:36:46] 2025-10-11 16:36:15,447 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-11 12:36:46] 2025-10-11 16:36:15,447 | INFO     | ***************************************
[2025-10-11 12:36:46] 2025-10-11 16:36:15,447 | INFO     | 
[2025-10-11 12:36:46] 2025-10-11 16:36:15,461 | INFO     | architecture information:
[2025-10-11 12:36:46] 2025-10-11 16:36:15,462 | INFO     | executing command: cat /etc/os-release
[2025-10-11 12:36:46] 2025-10-11 16:36:15,479 | INFO     | cat /etc/os-release:
[2025-10-11 12:36:46] NAME="CentOS Linux"
[2025-10-11 12:36:46] VERSION="7 (Core)"
[2025-10-11 12:36:46] ID="centos"
[2025-10-11 12:36:46] ID_LIKE="rhel fedora"
[2025-10-11 12:36:46] VERSION_ID="7"
[2025-10-11 12:36:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-11 12:36:46] ANSI_COLOR="0;31"
[2025-10-11 12:36:46] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-11 12:36:46] HOME_URL="https://www.centos.org/"
[2025-10-11 12:36:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-11 12:36:46] 
[2025-10-11 12:36:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-11 12:36:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-11 12:36:46] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-11 12:36:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-11 12:36:46] 
[2025-10-11 12:36:46] 2025-10-11 16:36:15,480 | INFO     | ***************************************
[2025-10-11 12:36:46] 2025-10-11 16:36:15,984 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-11 12:36:46] 2025-10-11 16:36:16,053 | INFO     | sufficient remaining disk space (76084674560 B)
[2025-10-11 12:36:46] 2025-10-11 16:36:16,054 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-11 12:36:46] 2025-10-11 16:36:16,054 | INFO     | current server update state: UPDATING_FINAL
[2025-10-11 12:36:46] 2025-10-11 16:36:16,054 | INFO     | update_server=False
[2025-10-11 12:36:46] 2025-10-11 16:36:16,054 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-11 12:36:46] 2025-10-11 16:36:16,054 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-11 12:36:46] 2025-10-11 16:36:16,054 | INFO     | aborting loop
[2025-10-11 12:36:46] 2025-10-11 16:36:16,055 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-11 12:36:46] 2025-10-11 16:36:16,655 | INFO     | all data control threads have been joined
[2025-10-11 12:36:46] 2025-10-11 16:36:17,060 | INFO     | [job] retrieve thread has finished
[2025-10-11 12:36:46] 2025-10-11 16:36:17,085 | INFO     | all job control threads have been joined
[2025-10-11 12:36:46] 2025-10-11 16:36:17,086 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-11 12:36:46] 2025-10-11 16:36:17,086 | INFO     | [job] job monitor thread has finished
[2025-10-11 12:36:46] 2025-10-11 16:36:17,467 | INFO     | all payload control threads have been joined
[2025-10-11 12:36:46] 2025-10-11 16:36:17,468 | INFO     | [payload] failed_post thread has finished
[2025-10-11 12:36:46] 2025-10-11 16:36:17,615 | INFO     | [job] validate thread has finished
[2025-10-11 12:36:46] 2025-10-11 16:36:17,665 | INFO     | [data] control thread has finished
[2025-10-11 12:36:46] 2025-10-11 16:36:17,950 | INFO     | [payload] validate_post thread has finished
[2025-10-11 12:36:46] 2025-10-11 16:36:17,977 | INFO     | [data] copytool_in thread has finished
[2025-10-11 12:36:46] 2025-10-11 16:36:18,033 | INFO     | [job] create_data_payload thread has finished
[2025-10-11 12:36:46] 2025-10-11 16:36:18,105 | INFO     | [job] control thread has finished
[2025-10-11 12:36:46] 2025-10-11 16:36:18,123 | INFO     | [payload] execute_payloads thread has finished
[2025-10-11 12:36:46] 2025-10-11 16:36:18,473 | INFO     | [payload] validate_pre thread has finished
[2025-10-11 12:36:46] 2025-10-11 16:36:18,497 | INFO     | [payload] control thread has finished
[2025-10-11 12:36:46] 2025-10-11 16:36:18,675 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-11 12:36:46] 2025-10-11 16:36:19,131 | INFO     | [data] copytool_out thread has finished
[2025-10-11 12:36:46] 2025-10-11 16:36:19,681 | INFO     | [job] queue monitor thread has finished
[2025-10-11 12:36:46] 2025-10-11 16:36:20,135 | INFO     | [data] queue_monitor thread has finished
[2025-10-11 12:36:46] 2025-10-11 16:36:26,541 | INFO     | job.realtimelogging is not enabled
[2025-10-11 12:36:46] 2025-10-11 16:36:27,547 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-11 12:36:46] 2025-10-11 16:36:36,796 | INFO     | [monitor] cgroup control has ended
[2025-10-11 12:36:46] 2025-10-11 16:36:38,698 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140419146241856)>', '<ExcThread(monitor, started 140418511529728)>']
[2025-10-11 12:36:46] 2025-10-11 16:36:43,732 | INFO     | all workflow threads have been joined
[2025-10-11 12:36:46] 2025-10-11 16:36:43,733 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-11 12:36:46] 2025-10-11 16:36:43,733 | INFO     | traces error code: 0
[2025-10-11 12:36:46] 2025-10-11 16:36:43,733 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-11 12:36:46] 2025-10-11 16:36:46,260 | INFO     | PID=2462807 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-11 12:36:46] 2025-10-11 16:36:46,292 | INFO     | .. there are 33 such processes running
[2025-10-11 12:36:46] 2025-10-11 16:36:46,294 | INFO     | found 0 job(s) in 20 queues
[2025-10-11 12:36:46] 2025-10-11 16:36:46,294 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-11 12:36:46] 2025-10-11 16:36:46,294 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-11 12:36:46] 2025-10-11 16:36:46,295 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-11 12:36:46] 2025-10-11 16:36:46,295 | INFO     | [monitor] control thread has ended
[2025-10-11 12:36:46] 2025-10-11 16:36:46,537 [wrapper] ==== pilot stdout END ====
[2025-10-11 12:36:46] 2025-10-11 16:36:46,541 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-11 12:36:46] 2025-10-11 16:36:46,543 [wrapper] pilotpid: 2462807
[2025-10-11 12:36:46] 2025-10-11 16:36:46,546 [wrapper] Pilot exit status: 0
[2025-10-11 12:36:46] 2025-10-11 16:36:46,634 [wrapper] pandaids: 6837961965 6837961965
[2025-10-11 12:36:46] 2025-10-11 16:36:46,747 [wrapper] cleanup supervisor_pilot 3158745 2462808
[2025-10-11 12:36:46] 2025-10-11 16:36:46,750 [wrapper] Test setup, not cleaning
[2025-10-11 12:36:46] 2025-10-11 16:36:46,754 [wrapper] apfmon messages muted
[2025-10-11 12:36:46] 2025-10-11 16:36:46,757 [wrapper] ==== wrapper stdout END ====
[2025-10-11 12:36:46] 2025-10-11 16:36:46,759 [wrapper] ==== wrapper stderr END ====
[2025-10-11 12:36:46]  *** Error codes and diagnostics ***
[2025-10-11 12:36:46]     "exeErrorCode": 0,
[2025-10-11 12:36:46]     "exeErrorDiag": "",
[2025-10-11 12:36:46]     "pilotErrorCode": 0,
[2025-10-11 12:36:46]     "pilotErrorDiag": "",
[2025-10-11 12:36:46]  *** Listing of results directory ***
[2025-10-11 12:36:46] total 620224
[2025-10-11 12:36:46] drwx------. 5 boincer umatlas      4096 Oct  7 03:00 pilot3
[2025-10-11 12:36:46] -rw-r--r--. 1 boincer umatlas    557409 Oct 10 22:50 pilot3.tar.gz
[2025-10-11 12:36:46] -rw-r--r--. 1 boincer umatlas      5112 Oct 10 22:54 queuedata.json
[2025-10-11 12:36:46] -rwx------. 1 boincer umatlas     36292 Oct 10 22:54 runpilot2-wrapper.sh
[2025-10-11 12:36:46] -rw-r--r--. 1 boincer umatlas       100 Oct 11 06:56 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-11 12:36:46] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 11 06:56 run_atlas
[2025-10-11 12:36:46] -rw-r--r--. 1 boincer umatlas       105 Oct 11 06:56 job.xml
[2025-10-11 12:36:46] -rw-r--r--. 3 boincer umatlas 218703575 Oct 11 06:56 EVNT.46676267._002003.pool.root.1
[2025-10-11 12:36:46] -rw-r--r--. 3 boincer umatlas 218703575 Oct 11 06:56 ATLAS.root_0
[2025-10-11 12:36:46] -rw-r--r--. 2 boincer umatlas     15120 Oct 11 06:56 start_atlas.sh
[2025-10-11 12:36:46] drwxrwx--x. 2 boincer umatlas      4096 Oct 11 06:56 shared
[2025-10-11 12:36:46] -rw-r--r--. 2 boincer umatlas    569680 Oct 11 06:56 input.tar.gz
[2025-10-11 12:36:46] -rw-r--r--. 1 boincer umatlas         0 Oct 11 06:56 boinc_lockfile
[2025-10-11 12:36:46] -rw-r--r--. 1 boincer umatlas      2550 Oct 11 09:32 pandaJob.out
[2025-10-11 12:36:46] -rw-------. 1 boincer umatlas    975520 Oct 11 09:32 agis_schedconf.cvmfs.json
[2025-10-11 12:36:46] -rw-r--r--. 1 boincer umatlas      6658 Oct 11 12:27 init_data.xml
[2025-10-11 12:36:46] -rw-------. 1 boincer umatlas 190025933 Oct 11 12:35 HITS.46676269._049699.pool.root.1
[2025-10-11 12:36:46] -rw-r--r--. 1 boincer umatlas       530 Oct 11 12:35 boinc_task_state.xml
[2025-10-11 12:36:46] -rw-------. 1 boincer umatlas      1041 Oct 11 12:35 memory_monitor_summary.json
[2025-10-11 12:36:46] -rw-------. 1 boincer umatlas   1560580 Oct 11 12:36 agis_ddmendpoints.agis.ALL.json
[2025-10-11 12:36:46] -rw-------. 1 boincer umatlas    438838 Oct 11 12:36 log.46676269._049699.job.log.tgz.1
[2025-10-11 12:36:46] -rw-------. 1 boincer umatlas      7820 Oct 11 12:36 heartbeat.json
[2025-10-11 12:36:46] -rw-r--r--. 1 boincer umatlas        28 Oct 11 12:36 wrapper_checkpoint.txt
[2025-10-11 12:36:46] -rw-------. 1 boincer umatlas        96 Oct 11 12:36 pilot_heartbeat.json
[2025-10-11 12:36:46] -rw-------. 1 boincer umatlas       823 Oct 11 12:36 pilotlog.txt
[2025-10-11 12:36:46] -rw-r--r--. 1 boincer umatlas      8192 Oct 11 12:36 boinc_mmap_file
[2025-10-11 12:36:46] -rw-------. 1 boincer umatlas   1450109 Oct 11 12:36 log.46676269._049699.job.log.1
[2025-10-11 12:36:46] -rw-------. 1 boincer umatlas       357 Oct 11 12:36 output.list
[2025-10-11 12:36:46] -rw-r--r--. 1 boincer umatlas       620 Oct 11 12:36 runtime_log
[2025-10-11 12:36:46] -rw-------. 1 boincer umatlas   1904640 Oct 11 12:36 result.tar.gz
[2025-10-11 12:36:46] -rw-r--r--. 1 boincer umatlas      8776 Oct 11 12:36 runtime_log.err
[2025-10-11 12:36:46] -rw-------. 1 boincer umatlas       778 Oct 11 12:36 hbaLDmfveR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmLDfNDmOK2f8m.diag
[2025-10-11 12:36:46] -rw-r--r--. 1 boincer umatlas     18182 Oct 11 12:36 stderr.txt
[2025-10-11 12:36:46] HITS file was successfully produced:
[2025-10-11 12:36:46] -rw-------. 1 boincer umatlas 190025933 Oct 11 12:35 shared/HITS.pool.root.1
[2025-10-11 12:36:46]  *** Contents of shared directory: ***
[2025-10-11 12:36:46] total 401596
[2025-10-11 12:36:46] -rw-r--r--. 3 boincer umatlas 218703575 Oct 11 06:56 ATLAS.root_0
[2025-10-11 12:36:46] -rw-r--r--. 2 boincer umatlas     15120 Oct 11 06:56 start_atlas.sh
[2025-10-11 12:36:46] -rw-r--r--. 2 boincer umatlas    569680 Oct 11 06:56 input.tar.gz
[2025-10-11 12:36:46] -rw-------. 1 boincer umatlas 190025933 Oct 11 12:35 HITS.pool.root.1
[2025-10-11 12:36:46] -rw-------. 1 boincer umatlas   1904640 Oct 11 12:36 result.tar.gz
12:36:48 (2454197): run_atlas exited; CPU time 48940.457918
12:36:48 (2454197): called boinc_finish(0)

</stderr_txt>
]]>

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