Stderr output

<core_client_version>8.2.5</core_client_version>
<![CDATA[
<stderr_txt>
2025-10-11 04:46:22 (10392): vboxwrapper version 26210
2025-10-11 04:46:22 (10392): BOINC client version: 8.2.5
2025-10-11 04:46:22 (10392): Detected: VirtualBox VboxManage Interface (Version: 7.2.2)
2025-10-11 04:46:23 (10392): Successfully copied 'init_data.xml' to the shared directory.
2025-10-11 04:46:23 (10392): Create VM. (boinc_3490b3dec84e8bdc, slot#0)
2025-10-11 04:46:23 (10392): Setting Memory Size for VM. (4300MB)
2025-10-11 04:46:24 (10392): Setting CPU Count for VM. (3)
2025-10-11 04:46:24 (10392): Setting Chipset Options for VM.
2025-10-11 04:46:24 (10392): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-10-11 04:46:25 (10392): Setting Boot Options for VM.
2025-10-11 04:46:25 (10392): Setting Network Configuration for NAT. (Driver: virtio)
2025-10-11 04:46:25 (10392): Enabling VM Network Access.
2025-10-11 04:46:26 (10392): Disabling USB Support for VM.
2025-10-11 04:46:26 (10392): Disabling COM Port Support for VM.
2025-10-11 04:46:26 (10392): Disabling LPT Port Support for VM.
2025-10-11 04:46:26 (10392): Disabling Audio Support for VM.
2025-10-11 04:46:27 (10392): Disabling Clipboard Support for VM.
2025-10-11 04:46:27 (10392): Disabling Drag and Drop Support for VM.
2025-10-11 04:46:27 (10392): Adding storage controller(s) to VM.
2025-10-11 04:46:27 (10392): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-10-11 04:46:28 (10392): Adding VirtualBox Guest Additions to VM.
2025-10-11 04:46:28 (10392): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-10-11 04:46:28 (10392): forwarding host port 56807 to guest port 80
2025-10-11 04:46:29 (10392): Enabling remote desktop for VM.
2025-10-11 04:46:29 (10392): Enabling shared directory for VM.
2025-10-11 04:46:30 (10392): Starting VM using VBoxManage interface. (boinc_3490b3dec84e8bdc, slot#0)
2025-10-11 04:46:35 (10392): Successfully started VM. (PID = '31088')
2025-10-11 04:46:35 (10392): Reporting VM Process ID to BOINC.
2025-10-11 04:46:35 (10392): Guest Log: BIOS: VirtualBox 7.2.2
2025-10-11 04:46:35 (10392): Guest Log: CPUID EDX: 0x178bfbff
2025-10-11 04:46:35 (10392): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-10-11 04:46:35 (10392): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-10-11 04:46:35 (10392): VM state change detected. (old = 'poweredoff', new = 'running')
2025-10-11 04:46:35 (10392): Detected: Web Application Enabled (http://localhost:56807)
2025-10-11 04:46:35 (10392): Detected: Remote Desktop Enabled (localhost:56808)
2025-10-11 04:46:35 (10392): Preference change detected
2025-10-11 04:46:35 (10392): Setting CPU throttle for VM. (100%)
2025-10-11 04:46:35 (10392): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-10-11 04:46:37 (10392): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-10-11 04:46:37 (10392): Guest Log: BIOS: Booting from Hard Disk...
2025-10-11 04:46:40 (10392): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-10-11 04:46:40 (10392): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-10-11 04:46:40 (10392): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-10-11 04:46:40 (10392): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-10-11 04:46:40 (10392): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-10-11 04:46:40 (10392): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-10-11 04:46:40 (10392): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-10-11 04:46:40 (10392): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-10-11 04:46:40 (10392): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-10-11 04:46:40 (10392): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-10-11 04:46:40 (10392): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-10-11 04:46:40 (10392): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-10-11 04:46:40 (10392): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-10-11 04:46:40 (10392): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-10-11 04:46:40 (10392): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-10-11 04:46:40 (10392): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-10-11 04:46:40 (10392): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-10-11 04:46:40 (10392): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-10-11 04:46:40 (10392): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-10-11 04:46:40 (10392): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-10-11 04:46:40 (10392): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-10-11 04:46:40 (10392): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-10-11 04:46:40 (10392): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-10-11 04:46:40 (10392): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-10-11 04:46:40 (10392): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-10-11 04:46:40 (10392): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-10-11 04:46:40 (10392): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-10-11 04:46:40 (10392): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-10-11 04:46:40 (10392): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-10-11 04:46:40 (10392): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-10-11 04:46:40 (10392): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-10-11 04:46:40 (10392): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-10-11 04:46:44 (10392): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-10-11 04:46:44 (10392): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-10-11 04:46:47 (10392): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-10-11 04:46:47 (10392): Guest Log: 00:00:00.000097 main     Log opened 2025-10-11T04:46:44.875118000Z
2025-10-11 04:46:47 (10392): Guest Log: 00:00:00.000155 main     OS Product: Linux
2025-10-11 04:46:47 (10392): Guest Log: 00:00:00.000174 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-10-11 04:46:47 (10392): Guest Log: 00:00:00.000188 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-10-11 04:46:47 (10392): Guest Log: 00:00:00.000202 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-10-11 04:46:47 (10392): Guest Log: 00:00:00.000202 main     Process ID: 1289
2025-10-11 04:46:47 (10392): Guest Log: 00:00:00.000202 main     Package type: LINUX_64BITS_GENERIC
2025-10-11 04:46:47 (10392): Guest Log: 00:00:00.000625 main     5.2.32 r132073 started. Verbose level = 0
2025-10-11 04:46:47 (10392): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-10-11 04:46:47 (10392): Guest Log: [INFO] Mounting shared directory
2025-10-11 04:46:47 (10392): Guest Log: [INFO] Checking for init_data.xml
2025-10-11 04:46:51 (10392): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-10-11 04:46:51 (10392): Guest Log: [INFO] Detected branch: prod
2025-10-11 04:46:51 (10392): Guest Log: This is the prod version of the ATLAS job wrapper
2025-10-11 04:46:51 (10392): Guest Log: Copying input files
2025-10-11 04:46:52 (10392): Guest Log: Copied input files into RunAtlas.
2025-10-11 04:46:52 (10392): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-10-11 04:46:52 (10392): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-10-11 04:46:52 (10392): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-10-11 04:46:52 (10392): Guest Log: Further information can be found at the LHC@home message board.
2025-10-11 04:46:57 (10392): Guest Log: 00:00:10.002134 timesync vgsvcTimeSyncWorker: Radical guest time change: 14 412 039 842 000ns (GuestNow=1 760 172 416 916 498 000 ns GuestLast=1 760 158 004 876 656 000 ns fSetTimeLastLoop=true )
2025-10-11 04:46:59 (10392): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-10-11 04:46:59 (10392): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-10-11 04:46:59 (10392): Guest Log: 2.6.3.0 1566 0 30152 151577 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-10-11 04:46:59 (10392): Guest Log: copied the webapp to /var/www
2025-10-11 04:46:59 (10392): Guest Log: ATHENA_PROC_NUMBER=3
2025-10-11 04:46:59 (10392): Guest Log: ATHENA_CORE_NUMBER=3
2025-10-11 04:46:59 (10392): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-10-11 04:46:59 (10392): Guest Log:  *** Starting ATLAS job. (PandaID=6837358949 taskID=46676269) ***
2025-10-11 06:26:37 (10392): Status Report: Elapsed Time: '6000.000000'
2025-10-11 06:26:37 (10392): Status Report: CPU Time: '17265.531250'
2025-10-11 07:17:47 (10392): Guest Log:  *** Job finished ***
2025-10-11 07:17:47 (10392): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-10-11 07:17:47 (10392): Guest Log: 2025-10-11 11:17:31,790 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-10-11 07:17:47 (10392): Guest Log: 2025-10-11 11:17:31,790 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-10-11 07:17:47 (10392): Guest Log: 2025-10-11 11:17:36,548 | INFO     | [monitor] cgroup control has ended
2025-10-11 07:17:47 (10392): Guest Log: 2025-10-11 11:17:37,551 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139799468975936)>', '<ExcThread(monitor, started 139798903781120)>']
2025-10-11 07:17:47 (10392): Guest Log: 2025-10-11 11:17:37,819 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-10-11 07:17:47 (10392): Guest Log: 2025-10-11 11:17:37,819 | INFO     | [monitor] control thread has ended
2025-10-11 07:17:47 (10392): Guest Log: 2025-10-11 11:17:42,557 | INFO     | all workflow threads have been joined
2025-10-11 07:17:47 (10392): Guest Log: 2025-10-11 11:17:42,557 | INFO     | end of generic workflow (traces error code: 0)
2025-10-11 07:17:47 (10392): Guest Log: 2025-10-11 11:17:42,557 | INFO     | traces error code: 0
2025-10-11 07:17:47 (10392): Guest Log: 2025-10-11 11:17:42,557 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-10-11 07:17:47 (10392): Guest Log: 2025-10-11 11:17:42,620 [wrapper] ==== pilot stdout END ====
2025-10-11 07:17:47 (10392): Guest Log: 2025-10-11 11:17:42,622 [wrapper] ==== wrapper stdout RESUME ====
2025-10-11 07:17:47 (10392): Guest Log: 2025-10-11 11:17:42,624 [wrapper] pilotpid: 5947
2025-10-11 07:17:47 (10392): Guest Log: 2025-10-11 11:17:42,627 [wrapper] Pilot exit status: 0
2025-10-11 07:17:47 (10392): Guest Log: 2025-10-11 11:17:42,671 [wrapper] pandaids: 6837358949
2025-10-11 07:17:47 (10392): Guest Log: 2025-10-11 11:17:42,687 [wrapper] cleanup supervisor_pilot 10243 5948
2025-10-11 07:17:47 (10392): Guest Log: 2025-10-11 11:17:42,690 [wrapper] Test setup, not cleaning
2025-10-11 07:17:47 (10392): Guest Log: 2025-10-11 11:17:42,693 [wrapper] apfmon messages muted
2025-10-11 07:17:47 (10392): Guest Log: 2025-10-11 11:17:42,695 [wrapper] ==== wrapper stdout END ====
2025-10-11 07:17:47 (10392): Guest Log: 2025-10-11 11:17:42,697 [wrapper] ==== wrapper stderr END ====
2025-10-11 07:17:47 (10392): Guest Log:  *** Error codes and diagnostics ***
2025-10-11 07:17:47 (10392): Guest Log:     "exeErrorCode": 0,
2025-10-11 07:17:47 (10392): Guest Log:     "exeErrorDiag": "",
2025-10-11 07:17:47 (10392): Guest Log:     "pilotErrorCode": 0,
2025-10-11 07:17:47 (10392): Guest Log:     "pilotErrorDiag": "",
2025-10-11 07:17:47 (10392): Guest Log:  *** Listing of results directory ***
2025-10-11 07:17:47 (10392): Guest Log: total 201444
2025-10-11 07:17:47 (10392): Guest Log: -rw-r--r--. 1 atlas atlas    557409 Oct  9 18:29 pilot3.tar.gz
2025-10-11 07:17:47 (10392): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Oct  9 18:52 queuedata.json
2025-10-11 07:17:47 (10392): Guest Log: -rwx------. 1 atlas atlas     36292 Oct  9 18:56 runpilot2-wrapper.sh
2025-10-11 07:17:47 (10392): Guest Log: -rwxr-xr-x. 1 atlas atlas      9027 Oct 11 08:46 init_data.xml
2025-10-11 07:17:47 (10392): Guest Log: -rwxr-xr-x. 1 atlas atlas    569687 Oct 11 08:46 input.tar.gz
2025-10-11 07:17:47 (10392): Guest Log: -rwxr-xr-x. 1 atlas atlas     15120 Oct 11 08:46 start_atlas.sh
2025-10-11 07:17:47 (10392): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Oct 11 08:46 EVNT.46676267._001014.pool.root.1 -> /data/./ATLAS.root_0
2025-10-11 07:17:47 (10392): Guest Log: -rw-r--r--. 1 atlas atlas      2549 Oct 11 08:46 pandaJob.out
2025-10-11 07:17:47 (10392): Guest Log: -rw-------. 1 atlas atlas    975509 Oct 11 08:47 agis_schedconf.cvmfs.json
2025-10-11 07:17:47 (10392): Guest Log: -rw-------. 1 atlas atlas   1560580 Oct 11 08:47 agis_ddmendpoints.agis.ALL.json
2025-10-11 07:17:47 (10392): Guest Log: drwx------. 5 atlas atlas      4096 Oct 11 08:47 pilot3
2025-10-11 07:17:47 (10392): Guest Log: -rw-------. 1 atlas atlas 199327520 Oct 11 11:16 HITS.46676269._024629.pool.root.1
2025-10-11 07:17:47 (10392): Guest Log: -rw-------. 1 atlas atlas        95 Oct 11 11:16 pilot_heartbeat.json
2025-10-11 07:17:47 (10392): Guest Log: -rw-------. 1 atlas atlas      1024 Oct 11 11:16 memory_monitor_summary.json
2025-10-11 07:17:47 (10392): Guest Log: -rw-------. 1 atlas atlas    320826 Oct 11 11:16 log.46676269._024629.job.log.tgz.1
2025-10-11 07:17:47 (10392): Guest Log: -rw-------. 1 atlas atlas      7781 Oct 11 11:17 heartbeat.json
2025-10-11 07:17:47 (10392): Guest Log: -rw-------. 1 atlas atlas      4877 Oct 11 11:17 pilotlog.txt
2025-10-11 07:17:47 (10392): Guest Log: -rw-------. 1 atlas atlas   1239442 Oct 11 11:17 log.46676269._024629.job.log.1
2025-10-11 07:17:47 (10392): Guest Log: -rw-------. 1 atlas atlas       357 Oct 11 11:17 output.list
2025-10-11 07:17:47 (10392): Guest Log: -rw-r--r--. 1 atlas atlas       620 Oct 11 11:17 runtime_log
2025-10-11 07:17:47 (10392): Guest Log: -rw-------. 1 atlas atlas   1576960 Oct 11 11:17 result.tar.gz
2025-10-11 07:17:47 (10392): Guest Log: -rw-------. 1 atlas atlas       652 Oct 11 11:17 ZZdNDmpzAR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmp5aNDmK50Opn.diag
2025-10-11 07:17:47 (10392): Guest Log: -rw-r--r--. 1 atlas atlas      8636 Oct 11 11:17 runtime_log.err
2025-10-11 07:17:47 (10392): Guest Log: Looking for outputfile HITS.46676269._024629.pool.root.1
2025-10-11 07:17:47 (10392): Guest Log: HITS file was successfully produced
2025-10-11 07:17:47 (10392): Guest Log: -rw-------. 1 atlas atlas 199327520 Oct 11 11:16 /home/atlas/RunAtlas/HITS.46676269._024629.pool.root.1
2025-10-11 07:17:48 (10392): Guest Log: Successfully finished the ATLAS job!
2025-10-11 07:17:48 (10392): Guest Log: Copying the results back to the shared directory!
2025-10-11 07:17:48 (10392): Guest Log:  *** Contents of shared directory: ***
2025-10-11 07:17:48 (10392): Guest Log: total 416044
2025-10-11 07:17:48 (10392): Guest Log: -rwxrwxrwx. 1 root root 224521059 Oct 11 08:46 ATLAS.root_0
2025-10-11 07:17:48 (10392): Guest Log: -rwxrwxrwx. 1 root root 199327520 Oct 11  2025 HITS.pool.root.1
2025-10-11 07:17:48 (10392): Guest Log: -rwxrwxrwx. 1 root root      9027 Oct 11 08:46 init_data.xml
2025-10-11 07:17:48 (10392): Guest Log: -rwxrwxrwx. 1 root root    569687 Oct 11 07:58 input.tar.gz
2025-10-11 07:17:48 (10392): Guest Log: -rwxrwxrwx. 1 root root   1576960 Oct 11  2025 result.tar.gz
2025-10-11 07:17:48 (10392): Guest Log: -rwxrwxrwx. 1 root root     15120 Oct 11 07:58 start_atlas.sh
2025-10-11 07:17:48 (10392): Guest Log:  *** Success! Shutting down the machine. ***
2025-10-11 07:17:48 (10392): VM Completion File Detected.
2025-10-11 07:17:48 (10392): Powering off VM.
2025-10-11 07:17:48 (10392): Successfully stopped VM.
2025-10-11 07:17:48 (10392): Deregistering VM. (boinc_3490b3dec84e8bdc, slot#0)
2025-10-11 07:17:48 (10392): Removing network bandwidth throttle group from VM.
2025-10-11 07:17:49 (10392): Removing VM from VirtualBox.
2025-10-11 07:17:54 (10392): called boinc_finish(0)

</stderr_txt>
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