Stderr output

<core_client_version>8.2.5</core_client_version>
<![CDATA[
<stderr_txt>
08:27:31 (2223660): wrapper (7.7.26015): starting
08:27:31 (2223660): wrapper: running run_atlas (--nthreads 12)
[2025-10-11 08:27:31] Arguments: --nthreads 12
[2025-10-11 08:27:31] Threads: 12
[2025-10-11 08:27:31] Checking for CVMFS
[2025-10-11 08:27:32] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 08:27:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 08:27:32] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 08:27:32] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 08:27:32] 2.13.2.0 3843265 3023 57308 151585 1 57 3207914 6144001 3668 130560 0 17983672 99.998 224145 468 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2025-10-11 08:27:32] CVMFS is ok
[2025-10-11 08:27:32] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 08:27:32] Small home clusters do not require a local http proxy but it is suggested if
[2025-10-11 08:27:32] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-10-11 08:27:32] Further information can be found at the LHC@home message board.
[2025-10-11 08:27:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 08:27:32] Checking for apptainer binary...
[2025-10-11 08:27:32] apptainer is not installed, using version from CVMFS
[2025-10-11 08:27:32] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 08:27:33] XeonFire
[2025-10-11 08:27:33] apptainer works
[2025-10-11 08:27:33] Set ATHENA_PROC_NUMBER=12
[2025-10-11 08:27:33] Set ATHENA_CORE_NUMBER=12
[2025-10-11 08:27:33] Starting ATLAS job with PandaID=6837733216
[2025-10-11 08:27:33] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-11 09:30:18]  *** The last 200 lines of the pilot log: ***
[2025-10-11 09:30:18]  scope=mc23_13p6TeV
[2025-10-11 09:30:18]  status=None
[2025-10-11 09:30:18]  status_code=0
[2025-10-11 09:30:18]  storage_token=
[2025-10-11 09:30:18]  surl=/var/lib/boinc-client/slots/3/PanDA_Pilot-6837733216/log.46676269._044763.job.log.tgz.1
[2025-10-11 09:30:18]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/2a/18/log.46676269._044763.job.log.tgz.1
[2025-10-11 09:30:18]  workdir=None
[2025-10-11 09:30:18] ]
[2025-10-11 09:30:18] 2025-10-11 14:29:39,416 | INFO     | transferring file log.46676269._044763.job.log.tgz.1 from /var/lib/boinc-client/slots/3/PanDA_Pilot-6837733216/log.46676269._044763.job.log.tgz.1 to /var/lib/boinc
[2025-10-11 09:30:18] 2025-10-11 14:29:39,416 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/3/PanDA_Pilot-6837733216/log.46676269._044763.job.log.tgz.1 /var/lib/boinc-client/slots/3/log.466762
[2025-10-11 09:30:18] 2025-10-11 14:29:39,437 | INFO     | adding to output.list: log.46676269._044763.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/2a/18/log.46676269._044763.job.log.tg
[2025-10-11 09:30:18] 2025-10-11 14:29:39,438 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-11 09:30:18] 2025-10-11 14:29:39,439 | INFO     | summary of transferred files:
[2025-10-11 09:30:18] 2025-10-11 14:29:39,439 | INFO     |  -- lfn=log.46676269._044763.job.log.tgz.1, status_code=0, status=transferred
[2025-10-11 09:30:18] 2025-10-11 14:29:39,439 | INFO     | stage-out finished correctly
[2025-10-11 09:30:18] 2025-10-11 14:29:40,607 | INFO     | time since job start (3702s) is within the limit (172800.0s)
[2025-10-11 09:30:18] 2025-10-11 14:29:40,844 | INFO     | monitor loop #272: job 0:6837733216 is in state 'finished'
[2025-10-11 09:30:18] 2025-10-11 14:29:40,845 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 09:30:18] 2025-10-11 14:29:41,447 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-11 09:30:18] 2025-10-11 14:29:41,548 | INFO     | job 6837733216 has state=finished
[2025-10-11 09:30:18] 2025-10-11 14:29:41,549 | INFO     | preparing for final server update for job 6837733216 in state='finished'
[2025-10-11 09:30:18] 2025-10-11 14:29:41,549 | INFO     | this job has now completed (state=finished)
[2025-10-11 09:30:18] 2025-10-11 14:29:41,549 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-11 09:30:18] 2025-10-11 14:29:41,549 | INFO     | log transfer has been attempted: DONE
[2025-10-11 09:30:18] 2025-10-11 14:29:41,550 | INFO     | job 6837733216 has finished - writing final server update
[2025-10-11 09:30:18] 2025-10-11 14:29:41,550 | INFO     | total number of processed events: 400 (read)
[2025-10-11 09:30:18] 2025-10-11 14:29:41,551 | INFO     | executing command: lscpu
[2025-10-11 09:30:18] 2025-10-11 14:29:41,625 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-11 09:30:18] 2025-10-11 14:29:42,093 | INFO     | PID=2227723 has CPU usage=15.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-10-11 09:30:18] 2025-10-11 14:29:42,094 | INFO     | .. there are 5 such processes running
[2025-10-11 09:30:18] 2025-10-11 14:29:43,094 | INFO     | time since job start (3705s) is within the limit (172800.0s)
[2025-10-11 09:30:18] 2025-10-11 14:29:43,348 | INFO     | monitor loop #273: job 0:6837733216 is in state 'finished'
[2025-10-11 09:30:18] 2025-10-11 14:29:43,348 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 09:30:18] 2025-10-11 14:29:45,100 | INFO     | time since job start (3707s) is within the limit (172800.0s)
[2025-10-11 09:30:18] 2025-10-11 14:29:45,851 | INFO     | monitor loop #274: job 0:6837733216 is in state 'finished'
[2025-10-11 09:30:18] 2025-10-11 14:29:45,851 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 09:30:18] 2025-10-11 14:29:46,136 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-11 09:30:18] 2025-10-11 14:29:46,151 | INFO     | found 44 cores (22 cores per socket, 2 sockets) HT, CPU MHz: 2286.5510909090913
[2025-10-11 09:30:18] 2025-10-11 14:29:46,167 | INFO     | using path: /var/lib/boinc-client/slots/3/PanDA_Pilot-6837733216/memory_monitor_summary.json (trf name=prmon)
[2025-10-11 09:30:18] 2025-10-11 14:29:46,168 | INFO     | extracted standard info from prmon json
[2025-10-11 09:30:18] 2025-10-11 14:29:46,169 | INFO     | extracted standard memory fields from prmon json
[2025-10-11 09:30:18] 2025-10-11 14:29:46,169 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-11 09:30:18] 2025-10-11 14:29:46,169 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-11 09:30:18] 2025-10-11 14:29:46,169 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-11 09:30:18] 2025-10-11 14:29:46,171 | INFO     | fitting pss+swap vs Time
[2025-10-11 09:30:18] 2025-10-11 14:29:46,171 | INFO     | sum of square deviations: 48810217.5
[2025-10-11 09:30:18] 2025-10-11 14:29:46,172 | INFO     | sum of deviations: -4480966761.5
[2025-10-11 09:30:18] 2025-10-11 14:29:46,172 | INFO     | mean x: 1760191227.5
[2025-10-11 09:30:18] 2025-10-11 14:29:46,172 | INFO     | mean y: 2789833.425925926
[2025-10-11 09:30:18] 2025-10-11 14:29:46,172 | INFO     | -- intersect: 161595152832.24652
[2025-10-11 09:30:18] 2025-10-11 14:29:46,172 | INFO     | intersect: 161595152832.24652
[2025-10-11 09:30:18] 2025-10-11 14:29:46,173 | INFO     | chi2: 0.06433700197163085
[2025-10-11 09:30:18] 2025-10-11 14:29:46,173 | INFO     | -- intersect: 161595152832.24652
[2025-10-11 09:30:18] 2025-10-11 14:29:46,173 | INFO     | current memory leak: -91.80 B/s (using 54 data points, chi2=0.06)
[2025-10-11 09:30:18] 2025-10-11 14:29:46,173 | INFO     | could have reported an average CPU frequency of 2329 MHz (6 samples)
[2025-10-11 09:30:18] 2025-10-11 14:29:46,174 | INFO     | ..............................
[2025-10-11 09:30:18] 2025-10-11 14:29:46,174 | INFO     | . Timing measurements:
[2025-10-11 09:30:18] 2025-10-11 14:29:46,174 | INFO     | . get job = 0 s
[2025-10-11 09:30:18] 2025-10-11 14:29:46,174 | INFO     | . initial setup = 13 s
[2025-10-11 09:30:18] 2025-10-11 14:29:46,174 | INFO     | . payload setup = 6 s
[2025-10-11 09:30:18] 2025-10-11 14:29:46,174 | INFO     | . stage-in = 0 s
[2025-10-11 09:30:18] 2025-10-11 14:29:46,174 | INFO     | . payload execution = 3674 s
[2025-10-11 09:30:18] 2025-10-11 14:29:46,174 | INFO     | . stage-out = 0 s
[2025-10-11 09:30:18] 2025-10-11 14:29:46,174 | INFO     | . log creation = 0 s
[2025-10-11 09:30:18] 2025-10-11 14:29:46,175 | INFO     | ..............................
[2025-10-11 09:30:18] 2025-10-11 14:29:46,454 | INFO     | 
[2025-10-11 09:30:18] 2025-10-11 14:29:46,454 | INFO     | job summary report
[2025-10-11 09:30:18] 2025-10-11 14:29:46,454 | INFO     | --------------------------------------------------
[2025-10-11 09:30:18] 2025-10-11 14:29:46,455 | INFO     | PanDA job id: 6837733216
[2025-10-11 09:30:18] 2025-10-11 14:29:46,455 | INFO     | task id: 46676269
[2025-10-11 09:30:18] 2025-10-11 14:29:46,455 | INFO     | errors: (none)
[2025-10-11 09:30:18] 2025-10-11 14:29:46,455 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-11 09:30:18] 2025-10-11 14:29:46,455 | INFO     | pilot state: finished 
[2025-10-11 09:30:18] 2025-10-11 14:29:46,455 | INFO     | transexitcode: 0
[2025-10-11 09:30:18] 2025-10-11 14:29:46,455 | INFO     | exeerrorcode: 0
[2025-10-11 09:30:18] 2025-10-11 14:29:46,456 | INFO     | exeerrordiag: 
[2025-10-11 09:30:18] 2025-10-11 14:29:46,456 | INFO     | exitcode: 0
[2025-10-11 09:30:18] 2025-10-11 14:29:46,456 | INFO     | exitmsg: OK
[2025-10-11 09:30:18] 2025-10-11 14:29:46,456 | INFO     | cpuconsumptiontime: 38050 s
[2025-10-11 09:30:18] 2025-10-11 14:29:46,456 | INFO     | nevents: 400
[2025-10-11 09:30:18] 2025-10-11 14:29:46,456 | INFO     | neventsw: 0
[2025-10-11 09:30:18] 2025-10-11 14:29:46,456 | INFO     | pid: 2234809
[2025-10-11 09:30:18] 2025-10-11 14:29:46,456 | INFO     | pgrp: 2234809
[2025-10-11 09:30:18] 2025-10-11 14:29:46,456 | INFO     | corecount: 12
[2025-10-11 09:30:18] 2025-10-11 14:29:46,457 | INFO     | event service: False
[2025-10-11 09:30:18] 2025-10-11 14:29:46,457 | INFO     | sizes: {0: 2348693, 1: 2348892, 6: 2349154, 12: 2349182, 3684: 2374815, 3685: 2374814, 3686: 2384010, 3688: 2384066, 3692: 2384260}
[2025-10-11 09:30:18] 2025-10-11 14:29:46,457 | INFO     | --------------------------------------------------
[2025-10-11 09:30:18] 2025-10-11 14:29:46,457 | INFO     | 
[2025-10-11 09:30:18] 2025-10-11 14:29:46,457 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/3
[2025-10-11 09:30:18] 2025-10-11 14:29:46,483 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-11 09:30:18] 2025-10-11 14:29:46,483 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-11 09:30:18] 2025-10-11 14:29:46,483 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-11 09:30:18] 2025-10-11 14:29:46,483 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-11 09:30:18] 2025-10-11 14:29:46,483 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-11 09:30:18] 2025-10-11 14:29:46,483 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-11 09:30:18] 2025-10-11 14:29:46,484 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-11 09:30:18] 2025-10-11 14:29:46,484 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-11 09:30:18] 2025-10-11 14:29:46,484 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-11 09:30:18] 2025-10-11 14:29:46,484 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-11 09:30:18] 2025-10-11 14:29:46,484 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-11 09:30:18] 2025-10-11 14:29:46,484 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-11 09:30:18] 2025-10-11 14:29:46,484 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-11 09:30:18] 2025-10-11 14:29:46,485 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-11 09:30:18] 2025-10-11 14:29:46,485 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-11 09:30:18] 2025-10-11 14:29:46,485 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-11 09:30:18] 2025-10-11 14:29:46,485 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-11 09:30:18] 2025-10-11 14:29:46,485 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-11 09:30:18] 2025-10-11 14:29:46,485 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-11 09:30:18] 2025-10-11 14:29:46,485 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-11 09:30:18] 2025-10-11 14:29:46,486 | INFO     | job 6837733216 has completed (purged errors)
[2025-10-11 09:30:18] 2025-10-11 14:29:46,486 | INFO     | overall cleanup function is called
[2025-10-11 09:30:18] 2025-10-11 14:29:47,495 | INFO     | --- collectZombieJob: --- 10, [2234809]
[2025-10-11 09:30:18] 2025-10-11 14:29:47,495 | INFO     | zombie collector waiting for pid 2234809
[2025-10-11 09:30:18] 2025-10-11 14:29:47,495 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-11 09:30:18] 2025-10-11 14:29:47,496 | INFO     | collected zombie processes
[2025-10-11 09:30:18] 2025-10-11 14:29:47,496 | INFO     | will attempt to kill all subprocesses of pid=2234809
[2025-10-11 09:30:18] 2025-10-11 14:29:47,937 | INFO     | process IDs to be killed: [2234809] (in reverse order)
[2025-10-11 09:30:18] 2025-10-11 14:29:48,065 | WARNING  | found no corresponding commands to process id(s)
[2025-10-11 09:30:18] 2025-10-11 14:29:48,065 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-11 09:30:18] 2025-10-11 14:29:48,075 | INFO     | did not find any defunct processes belonging to 2234809
[2025-10-11 09:30:18] 2025-10-11 14:29:48,083 | INFO     | did not find any defunct processes belonging to 2234809
[2025-10-11 09:30:18] 2025-10-11 14:29:48,083 | INFO     | ready for new job
[2025-10-11 09:30:18] 2025-10-11 14:29:48,083 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-11 09:30:18] 2025-10-11 14:29:48,085 | INFO     | ***************************************
[2025-10-11 09:30:18] 2025-10-11 14:29:48,085 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-11 09:30:18] 2025-10-11 14:29:48,086 | INFO     | ***************************************
[2025-10-11 09:30:18] 2025-10-11 14:29:48,086 | INFO     | 
[2025-10-11 09:30:18] 2025-10-11 14:29:48,091 | INFO     | architecture information:
[2025-10-11 09:30:18] 2025-10-11 14:29:48,091 | INFO     | executing command: cat /etc/os-release
[2025-10-11 09:30:18] 2025-10-11 14:29:48,106 | INFO     | cat /etc/os-release:
[2025-10-11 09:30:18] NAME="CentOS Linux"
[2025-10-11 09:30:18] VERSION="7 (Core)"
[2025-10-11 09:30:18] ID="centos"
[2025-10-11 09:30:18] ID_LIKE="rhel fedora"
[2025-10-11 09:30:18] VERSION_ID="7"
[2025-10-11 09:30:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-11 09:30:18] ANSI_COLOR="0;31"
[2025-10-11 09:30:18] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-11 09:30:18] HOME_URL="https://www.centos.org/"
[2025-10-11 09:30:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-11 09:30:18] 
[2025-10-11 09:30:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-11 09:30:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-11 09:30:18] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-11 09:30:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-11 09:30:18] 
[2025-10-11 09:30:18] 2025-10-11 14:29:48,106 | INFO     | ***************************************
[2025-10-11 09:30:18] 2025-10-11 14:29:48,609 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/3
[2025-10-11 09:30:18] 2025-10-11 14:29:48,626 | INFO     | sufficient remaining disk space (1816735514624 B)
[2025-10-11 09:30:18] 2025-10-11 14:29:48,627 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-11 09:30:18] 2025-10-11 14:29:48,627 | INFO     | current server update state: UPDATING_FINAL
[2025-10-11 09:30:18] 2025-10-11 14:29:48,627 | INFO     | update_server=False
[2025-10-11 09:30:18] 2025-10-11 14:29:48,627 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-11 09:30:18] 2025-10-11 14:29:49,138 | INFO     | all payload control threads have been joined
[2025-10-11 09:30:18] 2025-10-11 14:29:49,191 | INFO     | all data control threads have been joined
[2025-10-11 09:30:18] 2025-10-11 14:29:49,360 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-11 09:30:18] 2025-10-11 14:29:49,360 | INFO     | aborting loop
[2025-10-11 09:30:18] 2025-10-11 14:29:49,633 | INFO     | [job] retrieve thread has finished
[2025-10-11 09:30:18] 2025-10-11 14:29:49,852 | INFO     | all job control threads have been joined
[2025-10-11 09:30:18] 2025-10-11 14:29:49,963 | INFO     | [data] copytool_in thread has finished
[2025-10-11 09:30:18] 2025-10-11 14:29:50,024 | INFO     | [payload] execute_payloads thread has finished
[2025-10-11 09:30:18] 2025-10-11 14:29:50,055 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-11 09:30:18] 2025-10-11 14:29:50,144 | INFO     | [payload] control thread has finished
[2025-10-11 09:30:18] 2025-10-11 14:29:50,197 | INFO     | [data] control thread has finished
[2025-10-11 09:30:18] 2025-10-11 14:29:50,325 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-11 09:30:18] 2025-10-11 14:29:50,365 | INFO     | [job] job monitor thread has finished
[2025-10-11 09:30:18] 2025-10-11 14:29:50,525 | INFO     | [job] validate thread has finished
[2025-10-11 09:30:18] 2025-10-11 14:29:50,676 | INFO     | [job] create_data_payload thread has finished
[2025-10-11 09:30:18] 2025-10-11 14:29:50,805 | INFO     | [payload] validate_post thread has finished
[2025-10-11 09:30:18] 2025-10-11 14:29:50,858 | INFO     | [job] control thread has finished
[2025-10-11 09:30:18] 2025-10-11 14:29:51,074 | INFO     | [payload] validate_pre thread has finished
[2025-10-11 09:30:18] 2025-10-11 14:29:51,113 | INFO     | [payload] failed_post thread has finished
[2025-10-11 09:30:18] 2025-10-11 14:29:51,285 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-11 09:30:18] 2025-10-11 14:29:52,056 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-11 09:30:18] 2025-10-11 14:29:52,059 | INFO     | [data] copytool_out thread has finished
[2025-10-11 09:30:18] 2025-10-11 14:29:52,290 | INFO     | [job] queue monitor thread has finished
[2025-10-11 09:30:18] 2025-10-11 14:29:56,062 | INFO     | [data] queue_monitor thread has finished
[2025-10-11 09:30:18] 2025-10-11 14:30:02,968 | INFO     | [monitor] cgroup control has ended
[2025-10-11 09:30:18] 2025-10-11 14:30:04,218 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 126655154194240)>', '<ExcThread(monitor, started 126654617741056)>']
[2025-10-11 09:30:18] 2025-10-11 14:30:09,243 | INFO     | all workflow threads have been joined
[2025-10-11 09:30:18] 2025-10-11 14:30:09,243 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-11 09:30:18] 2025-10-11 14:30:09,244 | INFO     | traces error code: 0
[2025-10-11 09:30:18] 2025-10-11 14:30:09,244 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-11 09:30:18] 2025-10-11 14:30:18,663 | INFO     | PID=2227723 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-11 09:30:18] 2025-10-11 14:30:18,664 | INFO     | .. there are 5 such processes running
[2025-10-11 09:30:18] 2025-10-11 14:30:18,665 | INFO     | found 0 job(s) in 20 queues
[2025-10-11 09:30:18] 2025-10-11 14:30:18,665 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-11 09:30:18] 2025-10-11 14:30:18,665 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-11 09:30:18] 2025-10-11 14:30:18,665 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-11 09:30:18] 2025-10-11 14:30:18,665 | INFO     | [monitor] control thread has ended
[2025-10-11 09:30:18] 2025-10-11 14:30:18,778 [wrapper] ==== pilot stdout END ====
[2025-10-11 09:30:18] 2025-10-11 14:30:18,781 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-11 09:30:18] 2025-10-11 14:30:18,784 [wrapper] pilotpid: 2227723
[2025-10-11 09:30:18] 2025-10-11 14:30:18,787 [wrapper] Pilot exit status: 0
[2025-10-11 09:30:18] 2025-10-11 14:30:18,798 [wrapper] pandaids: 6837733216
[2025-10-11 09:30:18] 2025-10-11 14:30:18,868 [wrapper] cleanup supervisor_pilot 2355623 2227724
[2025-10-11 09:30:18] 2025-10-11 14:30:18,873 [wrapper] Test setup, not cleaning
[2025-10-11 09:30:18] 2025-10-11 14:30:18,875 [wrapper] apfmon messages muted
[2025-10-11 09:30:18] 2025-10-11 14:30:18,878 [wrapper] ==== wrapper stdout END ====
[2025-10-11 09:30:18] 2025-10-11 14:30:18,881 [wrapper] ==== wrapper stderr END ====
[2025-10-11 09:30:18]  *** Error codes and diagnostics ***
[2025-10-11 09:30:18]     "exeErrorCode": 0,
[2025-10-11 09:30:18]     "exeErrorDiag": "",
[2025-10-11 09:30:18]     "pilotErrorCode": 0,
[2025-10-11 09:30:18]     "pilotErrorDiag": "",
[2025-10-11 09:30:18]  *** Listing of results directory ***
[2025-10-11 09:30:18] total 423100
[2025-10-11 09:30:18] -rw-r--r-- 1 mark mark    557409 Oct 10 15:32 pilot3.tar.gz
[2025-10-11 09:30:18] -rw-r--r-- 1 mark mark      5112 Oct 10 15:36 queuedata.json
[2025-10-11 09:30:18] -rwx------ 1 mark mark     36292 Oct 10 15:38 runpilot2-wrapper.sh
[2025-10-11 09:30:18] -rw-rw-r-- 1 mark mark       100 Oct 11 08:27 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-11 09:30:18] -rwxr-xr-x 1 mark mark      7986 Oct 11 08:27 run_atlas
[2025-10-11 09:30:18] -rw-rw-r-- 1 mark mark       105 Oct 11 08:27 job.xml
[2025-10-11 09:30:18] -rw-r--r-- 2 mark mark 223230083 Oct 11 08:27 EVNT.46676267._001811.pool.root.1
[2025-10-11 09:30:18] -rw-r--r-- 2 mark mark     15120 Oct 11 08:27 start_atlas.sh
[2025-10-11 09:30:18] drwxrwx--x 2 mark mark      4096 Oct 11 08:27 shared
[2025-10-11 09:30:18] -rw-r--r-- 2 mark mark    569679 Oct 11 08:27 input.tar.gz
[2025-10-11 09:30:18] -rw-rw-r-- 1 mark mark      9341 Oct 11 08:27 init_data.xml
[2025-10-11 09:30:18] -rw-rw-r-- 1 mark mark         0 Oct 11 08:27 boinc_setup_complete
[2025-10-11 09:30:18] -rw-rw-r-- 1 mark mark         0 Oct 11 08:27 boinc_lockfile
[2025-10-11 09:30:18] -rw-rw-r-- 1 mark mark      2550 Oct 11 08:27 pandaJob.out
[2025-10-11 09:30:18] -rw------- 1 mark mark    975520 Oct 11 08:27 agis_schedconf.cvmfs.json
[2025-10-11 09:30:18] -rw------- 1 mark mark   1560580 Oct 11 08:27 agis_ddmendpoints.agis.ALL.json
[2025-10-11 09:30:18] drwx------ 5 mark mark      4096 Oct 11 08:27 pilot3
[2025-10-11 09:30:18] -rw------- 1 mark mark 204238242 Oct 11 09:28 HITS.46676269._044763.pool.root.1
[2025-10-11 09:30:18] -rw-rw-r-- 1 mark mark       530 Oct 11 09:28 boinc_task_state.xml
[2025-10-11 09:30:18] -rw------- 1 mark mark      1034 Oct 11 09:29 memory_monitor_summary.json
[2025-10-11 09:30:18] -rw------- 1 mark mark    382182 Oct 11 09:29 log.46676269._044763.job.log.tgz.1
[2025-10-11 09:30:18] -rw------- 1 mark mark      7794 Oct 11 09:29 heartbeat.json
[2025-10-11 09:30:18] -rw-rw-r-- 1 mark mark      8192 Oct 11 09:30 boinc_mmap_file
[2025-10-11 09:30:18] -rw-rw-r-- 1 mark mark        27 Oct 11 09:30 wrapper_checkpoint.txt
[2025-10-11 09:30:18] -rw------- 1 mark mark        95 Oct 11 09:30 pilot_heartbeat.json
[2025-10-11 09:30:18] -rw------- 1 mark mark       822 Oct 11 09:30 pilotlog.txt
[2025-10-11 09:30:18] -rw------- 1 mark mark    556203 Oct 11 09:30 log.46676269._044763.job.log.1
[2025-10-11 09:30:18] -rw------- 1 mark mark       357 Oct 11 09:30 output.list
[2025-10-11 09:30:18] -rw-rw-r-- 1 mark mark       620 Oct 11 09:30 runtime_log
[2025-10-11 09:30:18] -rw------- 1 mark mark    962560 Oct 11 09:30 result.tar.gz
[2025-10-11 09:30:18] -rw-rw-r-- 1 mark mark      8759 Oct 11 09:30 runtime_log.err
[2025-10-11 09:30:18] -rw------- 1 mark mark       645 Oct 11 09:30 k9cLDmv3YR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmiNeNDmHfq2Vo.diag
[2025-10-11 09:30:18] -rw-rw-r-- 1 mark mark     22155 Oct 11 09:30 stderr.txt
[2025-10-11 09:30:18] HITS file was successfully produced:
[2025-10-11 09:30:18] -rw------- 1 mark mark 204238242 Oct 11 09:28 shared/HITS.pool.root.1
[2025-10-11 09:30:18]  *** Contents of shared directory: ***
[2025-10-11 09:30:18] total 418976
[2025-10-11 09:30:18] -rw-r--r-- 2 mark mark 223230083 Oct 11 08:27 ATLAS.root_0
[2025-10-11 09:30:18] -rw-r--r-- 2 mark mark     15120 Oct 11 08:27 start_atlas.sh
[2025-10-11 09:30:18] -rw-r--r-- 2 mark mark    569679 Oct 11 08:27 input.tar.gz
[2025-10-11 09:30:18] -rw------- 1 mark mark 204238242 Oct 11 09:28 HITS.pool.root.1
[2025-10-11 09:30:18] -rw------- 1 mark mark    962560 Oct 11 09:30 result.tar.gz
09:30:20 (2223660): run_atlas exited; CPU time 38193.312388
09:30:20 (2223660): called boinc_finish(0)

</stderr_txt>
]]>

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