Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
04:02:59 (7887): wrapper (7.7.26015): starting
04:02:59 (7887): wrapper: running run_atlas (--nthreads 8)
[2025-10-11 04:02:59] Arguments: --nthreads 8
[2025-10-11 04:02:59] Threads: 8
[2025-10-11 04:02:59] Checking for CVMFS
[2025-10-11 04:02:59] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 04:02:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 04:02:59] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 04:02:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 04:02:59] 2.11.2.0 2777 221176 118332 151576 3 57 14162256 20275200 1 130560 2 76757484 99.974 14161622 12089 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-11 04:02:59] CVMFS is ok
[2025-10-11 04:02:59] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 04:02:59] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 04:02:59] Further information can be found at the LHC@home message board.
[2025-10-11 04:02:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 04:02:59] Checking for apptainer binary...
[2025-10-11 04:02:59] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 04:02:59] Running /usr/bin/apptainer --version
[2025-10-11 04:02:59] apptainer version 1.3.2-1.el7
[2025-10-11 04:02:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 04:03:01] c-204-9.aglt2.org
[2025-10-11 04:03:01] apptainer works
[2025-10-11 04:03:01] Set ATHENA_PROC_NUMBER=8
[2025-10-11 04:03:01] Set ATHENA_CORE_NUMBER=8
[2025-10-11 04:03:01] Starting ATLAS job with PandaID=6837960855
[2025-10-11 04:03:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-11 06:10:37]  *** The last 200 lines of the pilot log: ***
[2025-10-11 06:10:37] 2025-10-11 10:09:32,430 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-11 06:10:37] 2025-10-11 10:09:32,431 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-11 06:10:37] 2025-10-11 10:09:32,433 | INFO     | fitting pss+swap vs Time
[2025-10-11 06:10:37] 2025-10-11 10:09:32,434 | INFO     | sum of square deviations: 591173875.0
[2025-10-11 06:10:37] 2025-10-11 10:09:32,434 | INFO     | sum of deviations: 6276400715.0
[2025-10-11 06:10:37] 2025-10-11 10:09:32,434 | INFO     | mean x: 1760173581.5
[2025-10-11 06:10:37] 2025-10-11 10:09:32,434 | INFO     | mean y: 2454819.306451613
[2025-10-11 06:10:37] 2025-10-11 10:09:32,435 | INFO     | -- intersect: -18685033232.24304
[2025-10-11 06:10:37] 2025-10-11 10:09:32,435 | INFO     | intersect: -18685033232.24304
[2025-10-11 06:10:37] 2025-10-11 10:09:32,435 | INFO     | chi2: 2.231331557129396
[2025-10-11 06:10:37] 2025-10-11 10:09:32,435 | INFO     | sum of square deviations: 522502820.0
[2025-10-11 06:10:37] 2025-10-11 10:09:32,436 | INFO     | sum of deviations: 14394392650.0
[2025-10-11 06:10:37] 2025-10-11 10:09:32,436 | INFO     | mean x: 1760173429.0
[2025-10-11 06:10:37] 2025-10-11 10:09:32,436 | INFO     | mean y: 2472216.3613445377
[2025-10-11 06:10:37] 2025-10-11 10:09:32,436 | INFO     | -- intersect: -48488419122.98664
[2025-10-11 06:10:37] 2025-10-11 10:09:32,436 | INFO     | intersect: -48488419122.98664
[2025-10-11 06:10:37] 2025-10-11 10:09:32,436 | INFO     | chi2: 1.360457628158827
[2025-10-11 06:10:37] 2025-10-11 10:09:32,437 | INFO     | current chi2=1.360457628158827 (change=39.02933771487312 %)
[2025-10-11 06:10:37] 2025-10-11 10:09:32,437 | INFO     | sum of square deviations: 459366752.5
[2025-10-11 06:10:37] 2025-10-11 10:09:32,437 | INFO     | sum of deviations: 13645501689.0
[2025-10-11 06:10:37] 2025-10-11 10:09:32,438 | INFO     | mean x: 1760173276.5
[2025-10-11 06:10:37] 2025-10-11 10:09:32,438 | INFO     | mean y: 2470406.5614035088
[2025-10-11 06:10:37] 2025-10-11 10:09:32,438 | INFO     | -- intersect: -52283523925.19733
[2025-10-11 06:10:37] 2025-10-11 10:09:32,438 | INFO     | intersect: -52283523925.19733
[2025-10-11 06:10:37] 2025-10-11 10:09:32,438 | INFO     | chi2: 1.3627644635237617
[2025-10-11 06:10:37] 2025-10-11 10:09:32,438 | INFO     | current chi2=1.3627644635237617 (change=-0.16956319088428004 %)
[2025-10-11 06:10:37] 2025-10-11 10:09:32,438 | INFO     | right removable region: 113
[2025-10-11 06:10:37] 2025-10-11 10:09:32,439 | INFO     | sum of square deviations: 522502820.0
[2025-10-11 06:10:37] 2025-10-11 10:09:32,439 | INFO     | sum of deviations: -10158195190.0
[2025-10-11 06:10:37] 2025-10-11 10:09:32,439 | INFO     | mean x: 1760173734.0
[2025-10-11 06:10:37] 2025-10-11 10:09:32,439 | INFO     | mean y: 2490563.025210084
[2025-10-11 06:10:37] 2025-10-11 10:09:32,440 | INFO     | -- intersect: 34222762059.900845
[2025-10-11 06:10:37] 2025-10-11 10:09:32,440 | INFO     | intersect: 34222762059.900845
[2025-10-11 06:10:37] 2025-10-11 10:09:32,440 | INFO     | chi2: 0.9513915286769064
[2025-10-11 06:10:37] 2025-10-11 10:09:32,440 | INFO     | current chi2=0.9513915286769064 (change=57.36216226418319 %)
[2025-10-11 06:10:37] 2025-10-11 10:09:32,440 | INFO     | sum of square deviations: 459366752.5
[2025-10-11 06:10:37] 2025-10-11 10:09:32,441 | INFO     | sum of deviations: -6396106505.0
[2025-10-11 06:10:37] 2025-10-11 10:09:32,441 | INFO     | mean x: 1760173886.5
[2025-10-11 06:10:37] 2025-10-11 10:09:32,441 | INFO     | mean y: 2481417.8421052634
[2025-10-11 06:10:37] 2025-10-11 10:09:32,441 | INFO     | -- intersect: 24510697530.7916
[2025-10-11 06:10:37] 2025-10-11 10:09:32,441 | INFO     | intersect: 24510697530.7916
[2025-10-11 06:10:37] 2025-10-11 10:09:32,442 | INFO     | chi2: 0.9215962836131029
[2025-10-11 06:10:37] 2025-10-11 10:09:32,442 | INFO     | current chi2=0.9215962836131029 (change=3.131754295231063 %)
[2025-10-11 06:10:37] 2025-10-11 10:09:32,442 | INFO     | left removable region: 20
[2025-10-11 06:10:37] 2025-10-11 10:09:32,442 | INFO     | sum of square deviations: 249388862.0
[2025-10-11 06:10:37] 2025-10-11 10:09:32,443 | INFO     | sum of deviations: 1054390733.9999999
[2025-10-11 06:10:37] 2025-10-11 10:09:32,443 | INFO     | mean x: 1760173856.0
[2025-10-11 06:10:37] 2025-10-11 10:09:32,443 | INFO     | mean y: 2502066.2473118277
[2025-10-11 06:10:37] 2025-10-11 10:09:32,443 | INFO     | -- intersect: -7439333904.74104
[2025-10-11 06:10:37] 2025-10-11 10:09:32,443 | INFO     | intersect: -7439333904.74104
[2025-10-11 06:10:37] 2025-10-11 10:09:32,443 | INFO     | chi2: 0.00037762645366930166
[2025-10-11 06:10:37] 2025-10-11 10:09:32,443 | INFO     | -- intersect: -7439333904.74104
[2025-10-11 06:10:37] 2025-10-11 10:09:32,444 | INFO     | current memory leak: 4.23 B/s (using 93 data points, chi2=0.00)
[2025-10-11 06:10:37] 2025-10-11 10:09:32,444 | INFO     | could have reported an average CPU frequency of 2003 MHz (8 samples)
[2025-10-11 06:10:37] 2025-10-11 10:09:32,444 | INFO     | ..............................
[2025-10-11 06:10:37] 2025-10-11 10:09:32,444 | INFO     | . Timing measurements:
[2025-10-11 06:10:37] 2025-10-11 10:09:32,444 | INFO     | . get job = 0 s
[2025-10-11 06:10:37] 2025-10-11 10:09:32,444 | INFO     | . initial setup = 2 s
[2025-10-11 06:10:37] 2025-10-11 10:09:32,445 | INFO     | . payload setup = 8 s
[2025-10-11 06:10:37] 2025-10-11 10:09:32,445 | INFO     | . stage-in = 0 s
[2025-10-11 06:10:37] 2025-10-11 10:09:32,445 | INFO     | . payload execution = 7536 s
[2025-10-11 06:10:37] 2025-10-11 10:09:32,445 | INFO     | . stage-out = 0 s
[2025-10-11 06:10:37] 2025-10-11 10:09:32,445 | INFO     | . log creation = 0 s
[2025-10-11 06:10:37] 2025-10-11 10:09:32,445 | INFO     | ..............................
[2025-10-11 06:10:37] 2025-10-11 10:09:32,535 | INFO     | 
[2025-10-11 06:10:37] 2025-10-11 10:09:32,535 | INFO     | job summary report
[2025-10-11 06:10:37] 2025-10-11 10:09:32,536 | INFO     | --------------------------------------------------
[2025-10-11 06:10:37] 2025-10-11 10:09:32,536 | INFO     | PanDA job id: 6837960855
[2025-10-11 06:10:37] 2025-10-11 10:09:32,536 | INFO     | task id: 46676269
[2025-10-11 06:10:37] 2025-10-11 10:09:32,536 | INFO     | errors: (none)
[2025-10-11 06:10:37] 2025-10-11 10:09:32,536 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-11 06:10:37] 2025-10-11 10:09:32,536 | INFO     | pilot state: finished 
[2025-10-11 06:10:37] 2025-10-11 10:09:32,536 | INFO     | transexitcode: 0
[2025-10-11 06:10:37] 2025-10-11 10:09:32,536 | INFO     | exeerrorcode: 0
[2025-10-11 06:10:37] 2025-10-11 10:09:32,537 | INFO     | exeerrordiag: 
[2025-10-11 06:10:37] 2025-10-11 10:09:32,537 | INFO     | exitcode: 0
[2025-10-11 06:10:37] 2025-10-11 10:09:32,537 | INFO     | exitmsg: OK
[2025-10-11 06:10:37] 2025-10-11 10:09:32,537 | INFO     | cpuconsumptiontime: 56838 s
[2025-10-11 06:10:37] 2025-10-11 10:09:32,537 | INFO     | nevents: 400
[2025-10-11 06:10:37] 2025-10-11 10:09:32,538 | INFO     | neventsw: 0
[2025-10-11 06:10:37] 2025-10-11 10:09:32,538 | INFO     | pid: 17956
[2025-10-11 06:10:37] 2025-10-11 10:09:32,538 | INFO     | pgrp: 17956
[2025-10-11 06:10:37] 2025-10-11 10:09:32,538 | INFO     | corecount: 8
[2025-10-11 06:10:37] 2025-10-11 10:09:32,538 | INFO     | event service: False
[2025-10-11 06:10:37] 2025-10-11 10:09:32,538 | INFO     | sizes: {0: 2348686, 1: 2348885, 7: 2349147, 11: 2349175, 7548: 2376720, 7549: 2385902, 7557: 2386040}
[2025-10-11 06:10:37] 2025-10-11 10:09:32,539 | INFO     | --------------------------------------------------
[2025-10-11 06:10:37] 2025-10-11 10:09:32,539 | INFO     | 
[2025-10-11 06:10:37] 2025-10-11 10:09:32,539 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-11 06:10:37] 2025-10-11 10:09:32,567 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-11 06:10:37] 2025-10-11 10:09:32,568 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-11 06:10:37] 2025-10-11 10:09:32,568 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-11 06:10:37] 2025-10-11 10:09:32,568 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-11 06:10:37] 2025-10-11 10:09:32,568 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-11 06:10:37] 2025-10-11 10:09:32,568 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-11 06:10:37] 2025-10-11 10:09:32,569 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-11 06:10:37] 2025-10-11 10:09:32,569 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-11 06:10:37] 2025-10-11 10:09:32,569 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-11 06:10:37] 2025-10-11 10:09:32,569 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-11 06:10:37] 2025-10-11 10:09:32,569 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-11 06:10:37] 2025-10-11 10:09:32,569 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-11 06:10:37] 2025-10-11 10:09:32,570 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-11 06:10:37] 2025-10-11 10:09:32,570 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-11 06:10:37] 2025-10-11 10:09:32,570 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-11 06:10:37] 2025-10-11 10:09:32,570 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-11 06:10:37] 2025-10-11 10:09:32,570 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-11 06:10:37] 2025-10-11 10:09:32,571 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-11 06:10:37] 2025-10-11 10:09:32,571 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-11 06:10:37] 2025-10-11 10:09:32,571 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-11 06:10:37] 2025-10-11 10:09:32,571 | INFO     | job 6837960855 has completed (purged errors)
[2025-10-11 06:10:37] 2025-10-11 10:09:32,572 | INFO     | overall cleanup function is called
[2025-10-11 06:10:37] 2025-10-11 10:09:33,579 | INFO     | --- collectZombieJob: --- 10, [17956]
[2025-10-11 06:10:37] 2025-10-11 10:09:33,579 | INFO     | zombie collector waiting for pid 17956
[2025-10-11 06:10:37] 2025-10-11 10:09:33,579 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-11 06:10:37] 2025-10-11 10:09:33,580 | INFO     | collected zombie processes
[2025-10-11 06:10:37] 2025-10-11 10:09:33,580 | INFO     | will attempt to kill all subprocesses of pid=17956
[2025-10-11 06:10:37] 2025-10-11 10:09:33,670 | INFO     | process IDs to be killed: [17956] (in reverse order)
[2025-10-11 06:10:37] 2025-10-11 10:09:33,729 | WARNING  | found no corresponding commands to process id(s)
[2025-10-11 06:10:37] 2025-10-11 10:09:33,729 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-11 06:10:37] 2025-10-11 10:09:33,734 | INFO     | did not find any defunct processes belonging to 17956
[2025-10-11 06:10:37] 2025-10-11 10:09:33,737 | INFO     | did not find any defunct processes belonging to 17956
[2025-10-11 06:10:37] 2025-10-11 10:09:33,738 | INFO     | ready for new job
[2025-10-11 06:10:37] 2025-10-11 10:09:33,738 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-11 06:10:37] 2025-10-11 10:09:33,740 | INFO     | ***************************************
[2025-10-11 06:10:37] 2025-10-11 10:09:33,740 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-11 06:10:37] 2025-10-11 10:09:33,740 | INFO     | ***************************************
[2025-10-11 06:10:37] 2025-10-11 10:09:33,740 | INFO     | 
[2025-10-11 06:10:37] 2025-10-11 10:09:33,741 | INFO     | architecture information:
[2025-10-11 06:10:37] 2025-10-11 10:09:33,742 | INFO     | executing command: cat /etc/os-release
[2025-10-11 06:10:37] 2025-10-11 10:09:33,758 | INFO     | cat /etc/os-release:
[2025-10-11 06:10:37] NAME="CentOS Linux"
[2025-10-11 06:10:37] VERSION="7 (Core)"
[2025-10-11 06:10:37] ID="centos"
[2025-10-11 06:10:37] ID_LIKE="rhel fedora"
[2025-10-11 06:10:37] VERSION_ID="7"
[2025-10-11 06:10:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-11 06:10:37] ANSI_COLOR="0;31"
[2025-10-11 06:10:37] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-11 06:10:37] HOME_URL="https://www.centos.org/"
[2025-10-11 06:10:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-11 06:10:37] 
[2025-10-11 06:10:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-11 06:10:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-11 06:10:37] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-11 06:10:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-11 06:10:37] 
[2025-10-11 06:10:37] 2025-10-11 10:09:33,759 | INFO     | ***************************************
[2025-10-11 06:10:37] 2025-10-11 10:09:34,262 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-11 06:10:37] 2025-10-11 10:09:34,281 | INFO     | sufficient remaining disk space (18589155328 B)
[2025-10-11 06:10:37] 2025-10-11 10:09:34,281 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-11 06:10:37] 2025-10-11 10:09:34,282 | INFO     | current server update state: UPDATING_FINAL
[2025-10-11 06:10:37] 2025-10-11 10:09:34,282 | INFO     | update_server=False
[2025-10-11 06:10:37] 2025-10-11 10:09:34,282 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-11 06:10:37] 2025-10-11 10:09:34,282 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-11 06:10:37] 2025-10-11 10:09:34,634 | INFO     | all payload control threads have been joined
[2025-10-11 06:10:37] 2025-10-11 10:09:34,654 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-11 06:10:37] 2025-10-11 10:09:34,655 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-11 06:10:37] 2025-10-11 10:09:34,659 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-11 06:10:37] 2025-10-11 10:09:34,660 | INFO     | will abort loop
[2025-10-11 06:10:37] 2025-10-11 10:09:35,020 | INFO     | all job control threads have been joined
[2025-10-11 06:10:37] 2025-10-11 10:09:35,023 | INFO     | all data control threads have been joined
[2025-10-11 06:10:37] 2025-10-11 10:09:35,288 | INFO     | [job] retrieve thread has finished
[2025-10-11 06:10:37] 2025-10-11 10:09:35,288 | INFO     | [job] queue monitor thread has finished
[2025-10-11 06:10:37] 2025-10-11 10:09:35,367 | INFO     | [job] create_data_payload thread has finished
[2025-10-11 06:10:37] 2025-10-11 10:09:35,412 | INFO     | [data] copytool_in thread has finished
[2025-10-11 06:10:37] 2025-10-11 10:09:35,415 | INFO     | [payload] validate_pre thread has finished
[2025-10-11 06:10:37] 2025-10-11 10:09:35,445 | INFO     | [payload] execute_payloads thread has finished
[2025-10-11 06:10:37] 2025-10-11 10:09:35,601 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-11 06:10:37] 2025-10-11 10:09:35,640 | INFO     | [payload] control thread has finished
[2025-10-11 06:10:37] 2025-10-11 10:09:35,665 | INFO     | [job] job monitor thread has finished
[2025-10-11 06:10:37] 2025-10-11 10:09:35,849 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-11 06:10:37] 2025-10-11 10:09:36,005 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-11 06:10:37] 2025-10-11 10:09:36,024 | INFO     | [job] control thread has finished
[2025-10-11 06:10:37] 2025-10-11 10:09:36,028 | INFO     | [data] control thread has finished
[2025-10-11 06:10:37] 2025-10-11 10:09:36,288 | INFO     | [payload] validate_post thread has finished
[2025-10-11 06:10:37] 2025-10-11 10:09:36,471 | INFO     | [job] validate thread has finished
[2025-10-11 06:10:37] 2025-10-11 10:09:36,716 | INFO     | [payload] failed_post thread has finished
[2025-10-11 06:10:37] 2025-10-11 10:09:37,607 | INFO     | [data] copytool_out thread has finished
[2025-10-11 06:10:37] 2025-10-11 10:09:39,855 | INFO     | [data] queue_monitor thread has finished
[2025-10-11 06:10:37] 2025-10-11 10:10:05,105 | INFO     | PID=11602 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-11 06:10:37] 2025-10-11 10:10:05,105 | INFO     | found 0 job(s) in 20 queues
[2025-10-11 06:10:37] 2025-10-11 10:10:05,105 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-11 06:10:37] 2025-10-11 10:10:05,105 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-11 06:10:37] 2025-10-11 10:10:30,976 | INFO     | [monitor] cgroup control has ended
[2025-10-11 06:10:37] 2025-10-11 10:10:32,188 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140583270434624)>', '<ExcThread(monitor, started 140582374590208)>']
[2025-10-11 06:10:37] 2025-10-11 10:10:32,205 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-11 06:10:37] 2025-10-11 10:10:32,206 | INFO     | [monitor] control thread has ended
[2025-10-11 06:10:37] 2025-10-11 10:10:37,214 | INFO     | all workflow threads have been joined
[2025-10-11 06:10:37] 2025-10-11 10:10:37,217 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-11 06:10:37] 2025-10-11 10:10:37,219 | INFO     | traces error code: 0
[2025-10-11 06:10:37] 2025-10-11 10:10:37,220 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-11 06:10:37] 2025-10-11 10:10:37,338 [wrapper] ==== pilot stdout END ====
[2025-10-11 06:10:37] 2025-10-11 10:10:37,343 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-11 06:10:37] 2025-10-11 10:10:37,348 [wrapper] pilotpid: 11602
[2025-10-11 06:10:37] 2025-10-11 10:10:37,353 [wrapper] Pilot exit status: 0
[2025-10-11 06:10:37] 2025-10-11 10:10:37,373 [wrapper] pandaids: 6837960855
[2025-10-11 06:10:37] 2025-10-11 10:10:37,429 [wrapper] cleanup supervisor_pilot  5553 11603
[2025-10-11 06:10:37] 2025-10-11 10:10:37,434 [wrapper] Test setup, not cleaning
[2025-10-11 06:10:37] 2025-10-11 10:10:37,440 [wrapper] apfmon messages muted
[2025-10-11 06:10:37] 2025-10-11 10:10:37,445 [wrapper] ==== wrapper stdout END ====
[2025-10-11 06:10:37] 2025-10-11 10:10:37,450 [wrapper] ==== wrapper stderr END ====
[2025-10-11 06:10:37]  *** Error codes and diagnostics ***
[2025-10-11 06:10:37]     "exeErrorCode": 0,
[2025-10-11 06:10:37]     "exeErrorDiag": "",
[2025-10-11 06:10:37]     "pilotErrorCode": 0,
[2025-10-11 06:10:37]     "pilotErrorDiag": "",
[2025-10-11 06:10:37]  *** Listing of results directory ***
[2025-10-11 06:10:37] total 408672
[2025-10-11 06:10:37] -rw-r--r-- 1 boincer umatlas    557409 Oct 10 22:25 pilot3.tar.gz
[2025-10-11 06:10:37] -rw-r--r-- 1 boincer umatlas      5112 Oct 10 22:39 queuedata.json
[2025-10-11 06:10:37] -rwx------ 1 boincer umatlas     36292 Oct 10 22:40 runpilot2-wrapper.sh
[2025-10-11 06:10:37] -rw-r--r-- 1 boincer umatlas       100 Oct 11 04:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-11 06:10:37] -rwxr-xr-x 1 boincer umatlas      7986 Oct 11 04:02 run_atlas
[2025-10-11 06:10:37] -rw-r--r-- 1 boincer umatlas       105 Oct 11 04:02 job.xml
[2025-10-11 06:10:37] -rw-r--r-- 2 boincer umatlas 219386449 Oct 11 04:02 EVNT.46676267._001990.pool.root.1
[2025-10-11 06:10:37] -rw-r--r-- 2 boincer umatlas     15120 Oct 11 04:02 start_atlas.sh
[2025-10-11 06:10:37] drwxrwx--x 2 boincer umatlas      4096 Oct 11 04:02 shared
[2025-10-11 06:10:37] -rw-r--r-- 2 boincer umatlas    569681 Oct 11 04:02 input.tar.gz
[2025-10-11 06:10:37] -rw-r--r-- 1 boincer umatlas         0 Oct 11 04:02 boinc_lockfile
[2025-10-11 06:10:37] -rw-r--r-- 1 boincer umatlas      2550 Oct 11 04:03 pandaJob.out
[2025-10-11 06:10:37] -rw------- 1 boincer umatlas    975525 Oct 11 04:03 agis_schedconf.cvmfs.json
[2025-10-11 06:10:37] -rw------- 1 boincer umatlas   1560580 Oct 11 04:03 agis_ddmendpoints.agis.ALL.json
[2025-10-11 06:10:37] drwx------ 5 boincer umatlas      4096 Oct 11 04:03 pilot3
[2025-10-11 06:10:37] -rw-r--r-- 1 boincer umatlas      5908 Oct 11 06:03 init_data.xml
[2025-10-11 06:10:37] -rw------- 1 boincer umatlas 192304843 Oct 11 06:08 HITS.46676269._049384.pool.root.1
[2025-10-11 06:10:37] -rw-r--r-- 1 boincer umatlas       529 Oct 11 06:08 boinc_task_state.xml
[2025-10-11 06:10:37] -rw------- 1 boincer umatlas        95 Oct 11 06:09 pilot_heartbeat.json
[2025-10-11 06:10:37] -rw------- 1 boincer umatlas      1049 Oct 11 06:09 memory_monitor_summary.json
[2025-10-11 06:10:37] -rw------- 1 boincer umatlas    374149 Oct 11 06:09 log.46676269._049384.job.log.tgz.1
[2025-10-11 06:10:37] -rw------- 1 boincer umatlas      7844 Oct 11 06:09 heartbeat.json
[2025-10-11 06:10:37] -rw-r--r-- 1 boincer umatlas        27 Oct 11 06:10 wrapper_checkpoint.txt
[2025-10-11 06:10:37] -rw-r--r-- 1 boincer umatlas      8192 Oct 11 06:10 boinc_mmap_file
[2025-10-11 06:10:37] -rw------- 1 boincer umatlas      4932 Oct 11 06:10 pilotlog.txt
[2025-10-11 06:10:37] -rw------- 1 boincer umatlas   1068064 Oct 11 06:10 log.46676269._049384.job.log.1
[2025-10-11 06:10:37] -rw------- 1 boincer umatlas       357 Oct 11 06:10 output.list
[2025-10-11 06:10:37] -rw-r--r-- 1 boincer umatlas       620 Oct 11 06:10 runtime_log
[2025-10-11 06:10:37] -rw------- 1 boincer umatlas   1464320 Oct 11 06:10 result.tar.gz
[2025-10-11 06:10:37] -rw-r--r-- 1 boincer umatlas      8698 Oct 11 06:10 runtime_log.err
[2025-10-11 06:10:37] -rw------- 1 boincer umatlas       658 Oct 11 06:10 GY0MDmpheR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmb9eNDmlcJXxn.diag
[2025-10-11 06:10:37] -rw-r--r-- 1 boincer umatlas     20859 Oct 11 06:10 stderr.txt
[2025-10-11 06:10:37] HITS file was successfully produced:
[2025-10-11 06:10:37] -rw------- 1 boincer umatlas 192304843 Oct 11 06:08 shared/HITS.pool.root.1
[2025-10-11 06:10:37]  *** Contents of shared directory: ***
[2025-10-11 06:10:37] total 404056
[2025-10-11 06:10:37] -rw-r--r-- 2 boincer umatlas 219386449 Oct 11 04:02 ATLAS.root_0
[2025-10-11 06:10:37] -rw-r--r-- 2 boincer umatlas     15120 Oct 11 04:02 start_atlas.sh
[2025-10-11 06:10:37] -rw-r--r-- 2 boincer umatlas    569681 Oct 11 04:02 input.tar.gz
[2025-10-11 06:10:37] -rw------- 1 boincer umatlas 192304843 Oct 11 06:08 HITS.pool.root.1
[2025-10-11 06:10:37] -rw------- 1 boincer umatlas   1464320 Oct 11 06:10 result.tar.gz
06:10:39 (7887): run_atlas exited; CPU time 56794.001186
06:10:39 (7887): called boinc_finish(0)

</stderr_txt>
]]>

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