Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
11:04:38 (4132156): wrapper (7.7.26015): starting
11:04:38 (4132156): wrapper: running run_atlas (--nthreads 6)
[2025-10-14 11:04:38] Arguments: --nthreads 6
[2025-10-14 11:04:38] Threads: 6
[2025-10-14 11:04:38] Checking for CVMFS
[2025-10-14 11:04:39] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-14 11:04:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-14 11:04:39] Running cvmfs_config stat atlas.cern.ch
[2025-10-14 11:04:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-14 11:04:39] 2.13.1.0 3910062 346 56884 151679 3 187 30749731 52428801 854 130560 0 681618 99.994 13437 136 http://s1ihep-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2025-10-14 11:04:39] CVMFS is ok
[2025-10-14 11:04:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-14 11:04:39] Small home clusters do not require a local http proxy but it is suggested if
[2025-10-14 11:04:39] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-10-14 11:04:39] Further information can be found at the LHC@home message board.
[2025-10-14 11:04:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-14 11:04:39] Checking for apptainer binary...
[2025-10-14 11:04:39] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-14 11:04:39] Running /usr/bin/apptainer --version
[2025-10-14 11:04:39] apptainer version 1.4.1-1.el9
[2025-10-14 11:04:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-14 11:04:39] Atto003
[2025-10-14 11:04:39] apptainer works
[2025-10-14 11:04:39] Set ATHENA_PROC_NUMBER=6
[2025-10-14 11:04:39] Set ATHENA_CORE_NUMBER=6
[2025-10-14 11:04:39] Starting ATLAS job with PandaID=6838117061
[2025-10-14 11:04:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-14 12:26:26]  *** The last 200 lines of the pilot log: ***
[2025-10-14 12:26:26] 2025-10-14 03:25:36,389 | INFO     | preparing for final server update for job 6838117061 in state='finished'
[2025-10-14 12:26:26] 2025-10-14 03:25:36,389 | INFO     | this job has now completed (state=finished)
[2025-10-14 12:26:26] 2025-10-14 03:25:36,389 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-14 12:26:26] 2025-10-14 03:25:36,389 | INFO     | log transfer has been attempted: DONE
[2025-10-14 12:26:26] 2025-10-14 03:25:36,389 | INFO     | job 6838117061 has finished - writing final server update
[2025-10-14 12:26:26] 2025-10-14 03:25:36,389 | INFO     | total number of processed events: 400 (read)
[2025-10-14 12:26:26] 2025-10-14 03:25:36,391 | INFO     | executing command: lscpu
[2025-10-14 12:26:26] 2025-10-14 03:25:36,400 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-14 12:26:26] 2025-10-14 03:25:37,622 | INFO     | time since job start (4845s) is within the limit (172800.0s)
[2025-10-14 12:26:26] 2025-10-14 03:25:39,627 | INFO     | time since job start (4847s) is within the limit (172800.0s)
[2025-10-14 12:26:26] 2025-10-14 03:25:40,169 | WARNING  | process 4142689 can no longer be monitored (due to stat problems) - aborting
[2025-10-14 12:26:26] 2025-10-14 03:25:40,169 | INFO     | using path: /var/lib/boinc/slots/1/PanDA_Pilot-6838117061/memory_monitor_summary.json (trf name=prmon)
[2025-10-14 12:26:26] 2025-10-14 03:25:40,169 | INFO     | using path: /var/lib/boinc/slots/1/PanDA_Pilot-6838117061/memory_monitor_summary.json (trf name=prmon)
[2025-10-14 12:26:26] 2025-10-14 03:25:40,169 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2025-10-14 12:26:26] 2025-10-14 03:25:40,169 | WARNING  | maxPSS not found in memory monitor output
[2025-10-14 12:26:26] 2025-10-14 03:25:40,170 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 3329784 B
[2025-10-14 12:26:26] 2025-10-14 03:25:40,170 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15868 B
[2025-10-14 12:26:26] 2025-10-14 03:25:40,170 | INFO     | executing command: df -mP /var/lib/boinc/slots/1
[2025-10-14 12:26:26] 2025-10-14 03:25:41,633 | INFO     | time since job start (4849s) is within the limit (172800.0s)
[2025-10-14 12:26:26] 2025-10-14 03:25:43,637 | INFO     | time since job start (4851s) is within the limit (172800.0s)
[2025-10-14 12:26:26] 2025-10-14 03:25:44,694 | INFO     | PID=4135946 has CPU usage=2.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-14 12:26:26] 2025-10-14 03:25:44,694 | INFO     | .. there are 2 such processes running
[2025-10-14 12:26:26] 2025-10-14 03:25:45,694 | INFO     | time since job start (4853s) is within the limit (172800.0s)
[2025-10-14 12:26:26] 2025-10-14 03:25:47,699 | INFO     | time since job start (4855s) is within the limit (172800.0s)
[2025-10-14 12:26:26] 2025-10-14 03:25:49,705 | INFO     | time since job start (4857s) is within the limit (172800.0s)
[2025-10-14 12:26:26] 2025-10-14 03:25:51,710 | INFO     | time since job start (4859s) is within the limit (172800.0s)
[2025-10-14 12:26:26] 2025-10-14 03:25:53,715 | INFO     | time since job start (4861s) is within the limit (172800.0s)
[2025-10-14 12:26:26] 2025-10-14 03:25:54,891 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-14 12:26:26] 2025-10-14 03:25:54,894 | INFO     | found 8 cores (8 cores per socket, 1 socket) HT, CPU MHz: 3888.3115624999996
[2025-10-14 12:26:26] 2025-10-14 03:25:54,895 | INFO     | using path: /var/lib/boinc/slots/1/PanDA_Pilot-6838117061/memory_monitor_summary.json (trf name=prmon)
[2025-10-14 12:26:26] 2025-10-14 03:25:54,896 | INFO     | extracted standard info from prmon json
[2025-10-14 12:26:26] 2025-10-14 03:25:54,896 | INFO     | extracted standard memory fields from prmon json
[2025-10-14 12:26:26] 2025-10-14 03:25:54,896 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-14 12:26:26] 2025-10-14 03:25:54,896 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-14 12:26:26] 2025-10-14 03:25:54,896 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-14 12:26:26] 2025-10-14 03:25:54,896 | INFO     | fitting pss+swap vs Time
[2025-10-14 12:26:26] 2025-10-14 03:25:54,897 | INFO     | sum of square deviations: 115709439.94444431
[2025-10-14 12:26:26] 2025-10-14 03:25:54,897 | INFO     | sum of deviations: -1184054677.4444447
[2025-10-14 12:26:26] 2025-10-14 03:25:54,897 | INFO     | mean x: 1760409983.5277777
[2025-10-14 12:26:26] 2025-10-14 03:25:54,897 | INFO     | mean y: 2457546.722222222
[2025-10-14 12:26:26] 2025-10-14 03:25:54,897 | INFO     | -- intersect: 18016732580.95243
[2025-10-14 12:26:26] 2025-10-14 03:25:54,897 | INFO     | sufficient remaining disk space (110112014336 B)
[2025-10-14 12:26:26] 2025-10-14 03:25:54,897 | INFO     | intersect: 18016732580.95243
[2025-10-14 12:26:26] 2025-10-14 03:25:54,897 | INFO     | chi2: 0.023085698742279986
[2025-10-14 12:26:26] 2025-10-14 03:25:54,897 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-10-14 12:26:26] 2025-10-14 03:25:54,897 | INFO     | -- intersect: 18016732580.95243
[2025-10-14 12:26:26] 2025-10-14 03:25:54,897 | INFO     | current memory leak: -10.23 B/s (using 72 data points, chi2=0.02)
[2025-10-14 12:26:26] 2025-10-14 03:25:54,898 | INFO     | could have reported an average CPU frequency of 3813 MHz (6 samples)
[2025-10-14 12:26:26] 2025-10-14 03:25:54,898 | INFO     | ..............................
[2025-10-14 12:26:26] 2025-10-14 03:25:54,898 | INFO     | . Timing measurements:
[2025-10-14 12:26:26] 2025-10-14 03:25:54,898 | INFO     | . get job = 0 s
[2025-10-14 12:26:26] 2025-10-14 03:25:54,898 | INFO     | . initial setup = 4 s
[2025-10-14 12:26:26] 2025-10-14 03:25:54,898 | INFO     | . payload setup = 4 s
[2025-10-14 12:26:26] 2025-10-14 03:25:54,898 | INFO     | . stage-in = 0 s
[2025-10-14 12:26:26] 2025-10-14 03:25:54,898 | INFO     | . payload execution = 4819 s
[2025-10-14 12:26:26] 2025-10-14 03:25:54,898 | INFO     | . stage-out = 0 s
[2025-10-14 12:26:26] 2025-10-14 03:25:54,898 | INFO     | . log creation = 0 s
[2025-10-14 12:26:26] 2025-10-14 03:25:54,898 | INFO     | ..............................
[2025-10-14 12:26:26] 2025-10-14 03:25:54,927 | INFO     | 
[2025-10-14 12:26:26] 2025-10-14 03:25:54,927 | INFO     | job summary report
[2025-10-14 12:26:26] 2025-10-14 03:25:54,927 | INFO     | --------------------------------------------------
[2025-10-14 12:26:26] 2025-10-14 03:25:54,927 | INFO     | PanDA job id: 6838117061
[2025-10-14 12:26:26] 2025-10-14 03:25:54,928 | INFO     | task id: 46676269
[2025-10-14 12:26:26] 2025-10-14 03:25:54,928 | INFO     | errors: (none)
[2025-10-14 12:26:26] 2025-10-14 03:25:54,928 | INFO     | size of work directory /var/lib/boinc/slots/1/PanDA_Pilot-6838117061: 3627516 B (within 2537553920 B limit)
[2025-10-14 12:26:26] 2025-10-14 03:25:54,928 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-14 12:26:26] 2025-10-14 03:25:54,928 | INFO     | pfn file=/var/lib/boinc/slots/1/PanDA_Pilot-6838117061/HITS.46676269._051791.pool.root.1 does not exist (skip from workdir size calculation)
[2025-10-14 12:26:26] 2025-10-14 03:25:54,928 | INFO     | pilot state: finished 
[2025-10-14 12:26:26] 2025-10-14 03:25:54,928 | INFO     | total size of present files: 0 B (workdir size: 3627516 B)
[2025-10-14 12:26:26] 2025-10-14 03:25:54,928 | INFO     | transexitcode: 0
[2025-10-14 12:26:26] 2025-10-14 03:25:54,928 | INFO     | exeerrorcode: 0
[2025-10-14 12:26:26] 2025-10-14 03:25:54,928 | INFO     | output file size check: skipping output file /var/lib/boinc/slots/1/PanDA_Pilot-6838117061/HITS.46676269._051791.pool.root.1 since it does not exist
[2025-10-14 12:26:26] 2025-10-14 03:25:54,928 | INFO     | exeerrordiag: 
[2025-10-14 12:26:26] 2025-10-14 03:25:54,928 | INFO     | exitcode: 0
[2025-10-14 12:26:26] 2025-10-14 03:25:54,928 | INFO     | exitmsg: OK
[2025-10-14 12:26:26] 2025-10-14 03:25:54,928 | INFO     | cpuconsumptiontime: 26728 s
[2025-10-14 12:26:26] 2025-10-14 03:25:54,928 | INFO     | nevents: 400
[2025-10-14 12:26:26] 2025-10-14 03:25:54,928 | INFO     | neventsw: 0
[2025-10-14 12:26:26] 2025-10-14 03:25:54,928 | INFO     | pid: 4142689
[2025-10-14 12:26:26] 2025-10-14 03:25:54,928 | INFO     | pgrp: 4142689
[2025-10-14 12:26:26] 2025-10-14 03:25:54,928 | INFO     | corecount: 6
[2025-10-14 12:26:26] 2025-10-14 03:25:54,928 | INFO     | event service: False
[2025-10-14 12:26:26] 2025-10-14 03:25:54,928 | INFO     | sizes: {0: 2348857, 2: 2349119, 11: 2349147, 4827: 2375457, 4828: 2384511, 4848: 2384649}
[2025-10-14 12:26:26] 2025-10-14 03:25:54,929 | INFO     | --------------------------------------------------
[2025-10-14 12:26:26] 2025-10-14 03:25:54,929 | INFO     | 
[2025-10-14 12:26:26] 2025-10-14 03:25:54,929 | INFO     | executing command: ls -lF /var/lib/boinc/slots/1
[2025-10-14 12:26:26] 2025-10-14 03:25:54,936 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-14 12:26:26] 2025-10-14 03:25:54,936 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-14 12:26:26] 2025-10-14 03:25:54,936 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-14 12:26:26] 2025-10-14 03:25:54,936 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-14 12:26:26] 2025-10-14 03:25:54,936 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-14 12:26:26] 2025-10-14 03:25:54,936 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-14 12:26:26] 2025-10-14 03:25:54,936 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-14 12:26:26] 2025-10-14 03:25:54,936 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-14 12:26:26] 2025-10-14 03:25:54,936 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-14 12:26:26] 2025-10-14 03:25:54,936 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-14 12:26:26] 2025-10-14 03:25:54,936 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-14 12:26:26] 2025-10-14 03:25:54,936 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-14 12:26:26] 2025-10-14 03:25:54,936 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-14 12:26:26] 2025-10-14 03:25:54,936 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-14 12:26:26] 2025-10-14 03:25:54,936 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-14 12:26:26] 2025-10-14 03:25:54,936 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-14 12:26:26] 2025-10-14 03:25:54,936 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-14 12:26:26] 2025-10-14 03:25:54,936 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-14 12:26:26] 2025-10-14 03:25:54,937 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-14 12:26:26] 2025-10-14 03:25:54,937 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-14 12:26:26] 2025-10-14 03:25:54,937 | INFO     | job 6838117061 has completed (purged errors)
[2025-10-14 12:26:26] 2025-10-14 03:25:54,937 | INFO     | overall cleanup function is called
[2025-10-14 12:26:26] 2025-10-14 03:25:54,972 | INFO     | number of running child processes to parent process 4142689: 1
[2025-10-14 12:26:26] 2025-10-14 03:25:54,972 | INFO     | maximum number of monitored processes: 6
[2025-10-14 12:26:26] 2025-10-14 03:25:54,972 | INFO     | aborting job monitoring since job object (job id=6838117061) has expired
[2025-10-14 12:26:26] 2025-10-14 03:25:55,943 | INFO     | --- collectZombieJob: --- 10, [4142689]
[2025-10-14 12:26:26] 2025-10-14 03:25:55,943 | INFO     | zombie collector waiting for pid 4142689
[2025-10-14 12:26:26] 2025-10-14 03:25:55,943 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-14 12:26:26] 2025-10-14 03:25:55,943 | INFO     | collected zombie processes
[2025-10-14 12:26:26] 2025-10-14 03:25:55,943 | INFO     | will attempt to kill all subprocesses of pid=4142689
[2025-10-14 12:26:26] 2025-10-14 03:25:55,981 | INFO     | process IDs to be killed: [4142689] (in reverse order)
[2025-10-14 12:26:26] 2025-10-14 03:25:56,003 | WARNING  | found no corresponding commands to process id(s)
[2025-10-14 12:26:26] 2025-10-14 03:25:56,003 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-14 12:26:26] 2025-10-14 03:25:56,004 | INFO     | did not find any defunct processes belonging to 4142689
[2025-10-14 12:26:26] 2025-10-14 03:25:56,005 | INFO     | did not find any defunct processes belonging to 4142689
[2025-10-14 12:26:26] 2025-10-14 03:25:56,005 | INFO     | ready for new job
[2025-10-14 12:26:26] 2025-10-14 03:25:56,005 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-14 12:26:26] 2025-10-14 03:25:56,006 | INFO     | ***************************************
[2025-10-14 12:26:26] 2025-10-14 03:25:56,006 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-14 12:26:26] 2025-10-14 03:25:56,006 | INFO     | ***************************************
[2025-10-14 12:26:26] 2025-10-14 03:25:56,006 | INFO     | 
[2025-10-14 12:26:26] 2025-10-14 03:25:56,006 | INFO     | architecture information:
[2025-10-14 12:26:26] 2025-10-14 03:25:56,006 | INFO     | executing command: cat /etc/os-release
[2025-10-14 12:26:26] 2025-10-14 03:25:56,011 | INFO     | cat /etc/os-release:
[2025-10-14 12:26:26] NAME="CentOS Linux"
[2025-10-14 12:26:26] VERSION="7 (Core)"
[2025-10-14 12:26:26] ID="centos"
[2025-10-14 12:26:26] ID_LIKE="rhel fedora"
[2025-10-14 12:26:26] VERSION_ID="7"
[2025-10-14 12:26:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-14 12:26:26] ANSI_COLOR="0;31"
[2025-10-14 12:26:26] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-14 12:26:26] HOME_URL="https://www.centos.org/"
[2025-10-14 12:26:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-14 12:26:26] 
[2025-10-14 12:26:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-14 12:26:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-14 12:26:26] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-14 12:26:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-14 12:26:26] 
[2025-10-14 12:26:26] 2025-10-14 03:25:56,012 | INFO     | ***************************************
[2025-10-14 12:26:26] 2025-10-14 03:25:56,514 | INFO     | executing command: df -mP /var/lib/boinc/slots/1
[2025-10-14 12:26:26] 2025-10-14 03:25:56,521 | INFO     | sufficient remaining disk space (110116208640 B)
[2025-10-14 12:26:26] 2025-10-14 03:25:56,521 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-14 12:26:26] 2025-10-14 03:25:56,521 | INFO     | current server update state: UPDATING_FINAL
[2025-10-14 12:26:26] 2025-10-14 03:25:56,521 | INFO     | update_server=False
[2025-10-14 12:26:26] 2025-10-14 03:25:56,521 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-14 12:26:26] 2025-10-14 03:25:56,521 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-14 12:26:26] 2025-10-14 03:25:56,522 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-14 12:26:26] 2025-10-14 03:25:56,522 | INFO     | aborting loop
[2025-10-14 12:26:26] 2025-10-14 03:25:56,560 | INFO     | all data control threads have been joined
[2025-10-14 12:26:26] 2025-10-14 03:25:56,687 | INFO     | all job control threads have been joined
[2025-10-14 12:26:26] 2025-10-14 03:25:56,874 | INFO     | all payload control threads have been joined
[2025-10-14 12:26:26] 2025-10-14 03:25:57,226 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-14 12:26:26] 2025-10-14 03:25:57,527 | INFO     | [job] retrieve thread has finished
[2025-10-14 12:26:26] 2025-10-14 03:25:57,527 | INFO     | [job] job monitor thread has finished
[2025-10-14 12:26:26] 2025-10-14 03:25:57,527 | INFO     | [job] queue monitor thread has finished
[2025-10-14 12:26:26] 2025-10-14 03:25:57,565 | INFO     | [data] control thread has finished
[2025-10-14 12:26:26] 2025-10-14 03:25:57,693 | INFO     | [job] control thread has finished
[2025-10-14 12:26:26] 2025-10-14 03:25:57,783 | INFO     | [payload] failed_post thread has finished
[2025-10-14 12:26:26] 2025-10-14 03:25:57,879 | INFO     | [payload] control thread has finished
[2025-10-14 12:26:26] 2025-10-14 03:25:57,906 | INFO     | [job] validate thread has finished
[2025-10-14 12:26:26] 2025-10-14 03:25:58,055 | INFO     | [job] create_data_payload thread has finished
[2025-10-14 12:26:26] 2025-10-14 03:25:58,107 | INFO     | [payload] validate_pre thread has finished
[2025-10-14 12:26:26] 2025-10-14 03:25:58,615 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-14 12:26:26] 2025-10-14 03:25:58,836 | INFO     | [payload] execute_payloads thread has finished
[2025-10-14 12:26:26] 2025-10-14 03:25:58,850 | INFO     | [data] copytool_in thread has finished
[2025-10-14 12:26:26] 2025-10-14 03:25:58,871 | INFO     | [payload] validate_post thread has finished
[2025-10-14 12:26:26] 2025-10-14 03:25:58,999 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-14 12:26:26] 2025-10-14 03:25:59,212 | INFO     | [monitor] cgroup control has ended
[2025-10-14 12:26:26] 2025-10-14 03:25:59,229 | INFO     | [data] copytool_out thread has finished
[2025-10-14 12:26:26] 2025-10-14 03:26:02,621 | INFO     | [data] queue_monitor thread has finished
[2025-10-14 12:26:26] 2025-10-14 03:26:03,760 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140538254305088)>', '<ExcThread(monitor, started 140537612977920)>']
[2025-10-14 12:26:26] 2025-10-14 03:26:08,785 | INFO     | all workflow threads have been joined
[2025-10-14 12:26:26] 2025-10-14 03:26:08,785 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-14 12:26:26] 2025-10-14 03:26:08,785 | INFO     | traces error code: 0
[2025-10-14 12:26:26] 2025-10-14 03:26:08,785 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-14 12:26:26] 2025-10-14 03:26:26,846 | INFO     | PID=4135946 has CPU usage=0.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-14 12:26:26] 2025-10-14 03:26:26,846 | INFO     | .. there are 2 such processes running
[2025-10-14 12:26:26] 2025-10-14 03:26:26,847 | INFO     | found 0 job(s) in 20 queues
[2025-10-14 12:26:26] 2025-10-14 03:26:26,847 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-14 12:26:26] 2025-10-14 03:26:26,847 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-14 12:26:26] 2025-10-14 03:26:26,847 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-14 12:26:26] 2025-10-14 03:26:26,847 | INFO     | [monitor] control thread has ended
[2025-10-14 12:26:26] 2025-10-14 03:26:26,883 [wrapper] ==== pilot stdout END ====
[2025-10-14 12:26:26] 2025-10-14 03:26:26,884 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-14 12:26:26] 2025-10-14 03:26:26,885 [wrapper] pilotpid: 4135946
[2025-10-14 12:26:26] 2025-10-14 03:26:26,887 [wrapper] Pilot exit status: 0
[2025-10-14 12:26:26] 2025-10-14 03:26:26,891 [wrapper] pandaids: 6838117061
[2025-10-14 12:26:26] 2025-10-14 03:26:26,903 [wrapper] cleanup supervisor_pilot 4159983 4135947
[2025-10-14 12:26:26] 2025-10-14 03:26:26,904 [wrapper] Test setup, not cleaning
[2025-10-14 12:26:26] 2025-10-14 03:26:26,905 [wrapper] apfmon messages muted
[2025-10-14 12:26:26] 2025-10-14 03:26:26,906 [wrapper] ==== wrapper stdout END ====
[2025-10-14 12:26:26] 2025-10-14 03:26:26,907 [wrapper] ==== wrapper stderr END ====
[2025-10-14 12:26:26]  *** Error codes and diagnostics ***
[2025-10-14 12:26:26]     "exeErrorCode": 0,
[2025-10-14 12:26:26]     "exeErrorDiag": "",
[2025-10-14 12:26:26]     "pilotErrorCode": 0,
[2025-10-14 12:26:26]     "pilotErrorDiag": "",
[2025-10-14 12:26:26]  *** Listing of results directory ***
[2025-10-14 12:26:26] total 412472
[2025-10-14 12:26:26] -rw-r--r--. 1 boinc boinc    557409 Oct 11 14:13 pilot3.tar.gz
[2025-10-14 12:26:26] -rwx------. 1 boinc boinc     36292 Oct 11 14:18 runpilot2-wrapper.sh
[2025-10-14 12:26:26] -rw-r--r--. 1 boinc boinc      5112 Oct 11 14:18 queuedata.json
[2025-10-14 12:26:26] -rw-r--r--. 1 boinc boinc       100 Oct 14 11:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-14 12:26:26] -rwxr-xr-x. 1 boinc boinc      7986 Oct 14 11:04 run_atlas
[2025-10-14 12:26:26] -rw-r--r--. 1 boinc boinc       105 Oct 14 11:04 job.xml
[2025-10-14 12:26:26] -rw-r--r--. 1 boinc boinc      9345 Oct 14 11:04 init_data.xml
[2025-10-14 12:26:26] -rw-r--r--. 2 boinc boinc 221148261 Oct 14 11:04 EVNT.46676267._002081.pool.root.1
[2025-10-14 12:26:26] -rw-r--r--. 2 boinc boinc     15120 Oct 14 11:04 start_atlas.sh
[2025-10-14 12:26:26] drwxrwx--x. 2 boinc boinc        68 Oct 14 11:04 shared
[2025-10-14 12:26:26] -rw-r--r--. 2 boinc boinc    569677 Oct 14 11:04 input.tar.gz
[2025-10-14 12:26:26] -rw-r--r--. 1 boinc boinc         0 Oct 14 11:04 boinc_lockfile
[2025-10-14 12:26:26] -rw-r--r--. 1 boinc boinc      2550 Oct 14 11:04 pandaJob.out
[2025-10-14 12:26:26] -rw-------. 1 boinc boinc    972807 Oct 14 11:04 agis_schedconf.cvmfs.json
[2025-10-14 12:26:26] -rw-------. 1 boinc boinc   1560580 Oct 14 11:04 agis_ddmendpoints.agis.ALL.json
[2025-10-14 12:26:26] drwx------. 5 boinc boinc      4096 Oct 14 11:04 pilot3
[2025-10-14 12:26:26] -rw-------. 1 boinc boinc 195256781 Oct 14 12:25 HITS.46676269._051791.pool.root.1
[2025-10-14 12:26:26] -rw-------. 1 boinc boinc      1020 Oct 14 12:25 memory_monitor_summary.json
[2025-10-14 12:26:26] -rw-r--r--. 1 boinc boinc       529 Oct 14 12:25 boinc_task_state.xml
[2025-10-14 12:26:26] -rw-------. 1 boinc boinc    312751 Oct 14 12:25 log.46676269._051791.job.log.tgz.1
[2025-10-14 12:26:26] -rw-------. 1 boinc boinc      7771 Oct 14 12:25 heartbeat.json
[2025-10-14 12:26:26] -rw-r--r--. 1 boinc boinc        27 Oct 14 12:26 wrapper_checkpoint.txt
[2025-10-14 12:26:26] -rw-r--r--. 1 boinc boinc      8192 Oct 14 12:26 boinc_mmap_file
[2025-10-14 12:26:26] -rw-------. 1 boinc boinc       822 Oct 14 12:26 pilotlog.txt
[2025-10-14 12:26:26] -rw-------. 1 boinc boinc        95 Oct 14 12:26 pilot_heartbeat.json
[2025-10-14 12:26:26] -rw-------. 1 boinc boinc    725763 Oct 14 12:26 log.46676269._051791.job.log.1
[2025-10-14 12:26:26] -rw-------. 1 boinc boinc       357 Oct 14 12:26 output.list
[2025-10-14 12:26:26] -rw-r--r--. 1 boinc boinc       620 Oct 14 12:26 runtime_log
[2025-10-14 12:26:26] -rw-------. 1 boinc boinc   1054720 Oct 14 12:26 result.tar.gz
[2025-10-14 12:26:26] -rw-r--r--. 1 boinc boinc      8651 Oct 14 12:26 runtime_log.err
[2025-10-14 12:26:26] -rw-------. 1 boinc boinc       639 Oct 14 12:26 KQuKDm1AhR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmJUfNDmG8I5Jm.diag
[2025-10-14 12:26:26] -rw-r--r--. 1 boinc boinc     22561 Oct 14 12:26 stderr.txt
[2025-10-14 12:26:26] HITS file was successfully produced:
[2025-10-14 12:26:26] -rw-------. 1 boinc boinc 195256781 Oct 14 12:25 shared/HITS.pool.root.1
[2025-10-14 12:26:26]  *** Contents of shared directory: ***
[2025-10-14 12:26:26] total 408260
[2025-10-14 12:26:26] -rw-r--r--. 2 boinc boinc 221148261 Oct 14 11:04 ATLAS.root_0
[2025-10-14 12:26:26] -rw-r--r--. 2 boinc boinc     15120 Oct 14 11:04 start_atlas.sh
[2025-10-14 12:26:26] -rw-r--r--. 2 boinc boinc    569677 Oct 14 11:04 input.tar.gz
[2025-10-14 12:26:26] -rw-------. 1 boinc boinc 195256781 Oct 14 12:25 HITS.pool.root.1
[2025-10-14 12:26:26] -rw-------. 1 boinc boinc   1054720 Oct 14 12:26 result.tar.gz
12:26:27 (4132156): run_atlas exited; CPU time 26779.921002
12:26:27 (4132156): called boinc_finish(0)

</stderr_txt>
]]>

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