Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
12:26:31 (4162664): wrapper (7.7.26015): starting
12:26:31 (4162664): wrapper: running run_atlas (--nthreads 6)
[2025-10-14 12:26:31] Arguments: --nthreads 6
[2025-10-14 12:26:31] Threads: 6
[2025-10-14 12:26:31] Checking for CVMFS
[2025-10-14 12:26:31] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-14 12:26:31] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-14 12:26:31] Running cvmfs_config stat atlas.cern.ch
[2025-10-14 12:26:31] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-14 12:26:31] 2.13.1.0 3910062 427 59956 151683 2 56 30766488 52428800 94 130560 0 776636 99.993 20019 151 http://s1ihep-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2025-10-14 12:26:31] CVMFS is ok
[2025-10-14 12:26:31] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-14 12:26:31] Small home clusters do not require a local http proxy but it is suggested if
[2025-10-14 12:26:31] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-10-14 12:26:31] Further information can be found at the LHC@home message board.
[2025-10-14 12:26:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-14 12:26:31] Checking for apptainer binary...
[2025-10-14 12:26:31] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-14 12:26:31] Running /usr/bin/apptainer --version
[2025-10-14 12:26:31] apptainer version 1.4.1-1.el9
[2025-10-14 12:26:31] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-14 12:26:31] Atto003
[2025-10-14 12:26:31] apptainer works
[2025-10-14 12:26:31] Set ATHENA_PROC_NUMBER=6
[2025-10-14 12:26:31] Set ATHENA_CORE_NUMBER=6
[2025-10-14 12:26:31] Starting ATLAS job with PandaID=6837961067
[2025-10-14 12:26:31] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-14 13:46:59]  *** The last 200 lines of the pilot log: ***
[2025-10-14 13:46:59] 2025-10-14 04:46:07,025 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-14 13:46:59] 2025-10-14 04:46:07,845 | INFO     | time since job start (4762s) is within the limit (172800.0s)
[2025-10-14 13:46:59] 2025-10-14 04:46:08,130 | INFO     | monitor loop #363: job 0:6837961067 is in state 'finished'
[2025-10-14 13:46:59] 2025-10-14 04:46:08,131 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-14 13:46:59] 2025-10-14 04:46:08,933 | INFO     | PID=4168586 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-14 13:46:59] 2025-10-14 04:46:08,933 | INFO     | .. there are 2 such processes running
[2025-10-14 13:46:59] 2025-10-14 04:46:09,892 | INFO     | job 6837961067 has state=finished
[2025-10-14 13:46:59] 2025-10-14 04:46:09,892 | INFO     | preparing for final server update for job 6837961067 in state='finished'
[2025-10-14 13:46:59] 2025-10-14 04:46:09,893 | INFO     | this job has now completed (state=finished)
[2025-10-14 13:46:59] 2025-10-14 04:46:09,893 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-14 13:46:59] 2025-10-14 04:46:09,893 | INFO     | log transfer has been attempted: DONE
[2025-10-14 13:46:59] 2025-10-14 04:46:09,893 | INFO     | job 6837961067 has finished - writing final server update
[2025-10-14 13:46:59] 2025-10-14 04:46:09,893 | INFO     | total number of processed events: 400 (read)
[2025-10-14 13:46:59] 2025-10-14 04:46:09,894 | INFO     | executing command: lscpu
[2025-10-14 13:46:59] 2025-10-14 04:46:09,906 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-14 13:46:59] 2025-10-14 04:46:09,934 | INFO     | time since job start (4764s) is within the limit (172800.0s)
[2025-10-14 13:46:59] 2025-10-14 04:46:10,633 | INFO     | monitor loop #364: job 0:6837961067 is in state 'finished'
[2025-10-14 13:46:59] 2025-10-14 04:46:10,633 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-14 13:46:59] 2025-10-14 04:46:11,939 | INFO     | time since job start (4766s) is within the limit (172800.0s)
[2025-10-14 13:46:59] 2025-10-14 04:46:13,136 | INFO     | monitor loop #365: job 0:6837961067 is in state 'finished'
[2025-10-14 13:46:59] 2025-10-14 04:46:13,136 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-14 13:46:59] 2025-10-14 04:46:13,945 | INFO     | time since job start (4768s) is within the limit (172800.0s)
[2025-10-14 13:46:59] 2025-10-14 04:46:15,639 | INFO     | monitor loop #366: job 0:6837961067 is in state 'finished'
[2025-10-14 13:46:59] 2025-10-14 04:46:15,639 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-14 13:46:59] 2025-10-14 04:46:15,950 | INFO     | time since job start (4770s) is within the limit (172800.0s)
[2025-10-14 13:46:59] 2025-10-14 04:46:17,956 | INFO     | time since job start (4772s) is within the limit (172800.0s)
[2025-10-14 13:46:59] 2025-10-14 04:46:18,142 | INFO     | monitor loop #367: job 0:6837961067 is in state 'finished'
[2025-10-14 13:46:59] 2025-10-14 04:46:18,142 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-14 13:46:59] 2025-10-14 04:46:19,961 | INFO     | time since job start (4774s) is within the limit (172800.0s)
[2025-10-14 13:46:59] 2025-10-14 04:46:20,645 | INFO     | monitor loop #368: job 0:6837961067 is in state 'finished'
[2025-10-14 13:46:59] 2025-10-14 04:46:20,645 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-14 13:46:59] 2025-10-14 04:46:21,966 | INFO     | time since job start (4776s) is within the limit (172800.0s)
[2025-10-14 13:46:59] 2025-10-14 04:46:23,148 | INFO     | monitor loop #369: job 0:6837961067 is in state 'finished'
[2025-10-14 13:46:59] 2025-10-14 04:46:23,148 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-14 13:46:59] 2025-10-14 04:46:23,972 | INFO     | time since job start (4778s) is within the limit (172800.0s)
[2025-10-14 13:46:59] 2025-10-14 04:46:24,220 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-14 13:46:59] 2025-10-14 04:46:24,222 | INFO     | found 8 cores (8 cores per socket, 1 socket) HT, CPU MHz: 3900.0025625
[2025-10-14 13:46:59] 2025-10-14 04:46:24,224 | INFO     | using path: /var/lib/boinc/slots/1/PanDA_Pilot-6837961067/memory_monitor_summary.json (trf name=prmon)
[2025-10-14 13:46:59] 2025-10-14 04:46:24,225 | INFO     | extracted standard info from prmon json
[2025-10-14 13:46:59] 2025-10-14 04:46:24,225 | INFO     | extracted standard memory fields from prmon json
[2025-10-14 13:46:59] 2025-10-14 04:46:24,225 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-14 13:46:59] 2025-10-14 04:46:24,225 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-14 13:46:59] 2025-10-14 04:46:24,225 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-14 13:46:59] 2025-10-14 04:46:24,226 | INFO     | fitting pss+swap vs Time
[2025-10-14 13:46:59] 2025-10-14 04:46:24,227 | INFO     | sum of square deviations: 110960220.0
[2025-10-14 13:46:59] 2025-10-14 04:46:24,227 | INFO     | sum of deviations: -6071491772.0
[2025-10-14 13:46:59] 2025-10-14 04:46:24,227 | INFO     | mean x: 1760414870.0
[2025-10-14 13:46:59] 2025-10-14 04:46:24,227 | INFO     | mean y: 2548992.563380282
[2025-10-14 13:46:59] 2025-10-14 04:46:24,227 | INFO     | -- intersect: 96328461094.31886
[2025-10-14 13:46:59] 2025-10-14 04:46:24,227 | INFO     | intersect: 96328461094.31886
[2025-10-14 13:46:59] 2025-10-14 04:46:24,227 | INFO     | chi2: 0.04607046237415908
[2025-10-14 13:46:59] 2025-10-14 04:46:24,227 | INFO     | -- intersect: 96328461094.31886
[2025-10-14 13:46:59] 2025-10-14 04:46:24,227 | INFO     | current memory leak: -54.72 B/s (using 71 data points, chi2=0.05)
[2025-10-14 13:46:59] 2025-10-14 04:46:24,228 | INFO     | could have reported an average CPU frequency of 3843 MHz (6 samples)
[2025-10-14 13:46:59] 2025-10-14 04:46:24,228 | INFO     | ..............................
[2025-10-14 13:46:59] 2025-10-14 04:46:24,228 | INFO     | . Timing measurements:
[2025-10-14 13:46:59] 2025-10-14 04:46:24,228 | INFO     | . get job = 0 s
[2025-10-14 13:46:59] 2025-10-14 04:46:24,228 | INFO     | . initial setup = 6 s
[2025-10-14 13:46:59] 2025-10-14 04:46:24,228 | INFO     | . payload setup = 6 s
[2025-10-14 13:46:59] 2025-10-14 04:46:24,228 | INFO     | . stage-in = 0 s
[2025-10-14 13:46:59] 2025-10-14 04:46:24,228 | INFO     | . payload execution = 4731 s
[2025-10-14 13:46:59] 2025-10-14 04:46:24,228 | INFO     | . stage-out = 0 s
[2025-10-14 13:46:59] 2025-10-14 04:46:24,228 | INFO     | . log creation = 0 s
[2025-10-14 13:46:59] 2025-10-14 04:46:24,228 | INFO     | ..............................
[2025-10-14 13:46:59] 2025-10-14 04:46:24,776 | INFO     | 
[2025-10-14 13:46:59] 2025-10-14 04:46:24,776 | INFO     | job summary report
[2025-10-14 13:46:59] 2025-10-14 04:46:24,776 | INFO     | --------------------------------------------------
[2025-10-14 13:46:59] 2025-10-14 04:46:24,776 | INFO     | PanDA job id: 6837961067
[2025-10-14 13:46:59] 2025-10-14 04:46:24,776 | INFO     | task id: 46676269
[2025-10-14 13:46:59] 2025-10-14 04:46:24,776 | INFO     | errors: (none)
[2025-10-14 13:46:59] 2025-10-14 04:46:24,776 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-14 13:46:59] 2025-10-14 04:46:24,776 | INFO     | pilot state: finished 
[2025-10-14 13:46:59] 2025-10-14 04:46:24,776 | INFO     | transexitcode: 0
[2025-10-14 13:46:59] 2025-10-14 04:46:24,776 | INFO     | exeerrorcode: 0
[2025-10-14 13:46:59] 2025-10-14 04:46:24,777 | INFO     | exeerrordiag: 
[2025-10-14 13:46:59] 2025-10-14 04:46:24,777 | INFO     | exitcode: 0
[2025-10-14 13:46:59] 2025-10-14 04:46:24,777 | INFO     | exitmsg: OK
[2025-10-14 13:46:59] 2025-10-14 04:46:24,777 | INFO     | cpuconsumptiontime: 26019 s
[2025-10-14 13:46:59] 2025-10-14 04:46:24,777 | INFO     | nevents: 400
[2025-10-14 13:46:59] 2025-10-14 04:46:24,777 | INFO     | neventsw: 0
[2025-10-14 13:46:59] 2025-10-14 04:46:24,777 | INFO     | pid: 4175328
[2025-10-14 13:46:59] 2025-10-14 04:46:24,777 | INFO     | pgrp: 4175328
[2025-10-14 13:46:59] 2025-10-14 04:46:24,777 | INFO     | corecount: 6
[2025-10-14 13:46:59] 2025-10-14 04:46:24,777 | INFO     | event service: False
[2025-10-14 13:46:59] 2025-10-14 04:46:24,777 | INFO     | sizes: {0: 2348686, 1: 2348885, 5: 2349147, 11: 2349203, 4741: 2375486, 4742: 2375485, 4743: 2384667, 4746: 2384723, 4763: 2384917}
[2025-10-14 13:46:59] 2025-10-14 04:46:24,777 | INFO     | --------------------------------------------------
[2025-10-14 13:46:59] 2025-10-14 04:46:24,777 | INFO     | 
[2025-10-14 13:46:59] 2025-10-14 04:46:24,777 | INFO     | executing command: ls -lF /var/lib/boinc/slots/1
[2025-10-14 13:46:59] 2025-10-14 04:46:24,785 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-14 13:46:59] 2025-10-14 04:46:24,785 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-14 13:46:59] 2025-10-14 04:46:24,785 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-14 13:46:59] 2025-10-14 04:46:24,785 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-14 13:46:59] 2025-10-14 04:46:24,785 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-14 13:46:59] 2025-10-14 04:46:24,785 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-14 13:46:59] 2025-10-14 04:46:24,785 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-14 13:46:59] 2025-10-14 04:46:24,786 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-14 13:46:59] 2025-10-14 04:46:24,786 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-14 13:46:59] 2025-10-14 04:46:24,786 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-14 13:46:59] 2025-10-14 04:46:24,786 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-14 13:46:59] 2025-10-14 04:46:24,786 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-14 13:46:59] 2025-10-14 04:46:24,786 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-14 13:46:59] 2025-10-14 04:46:24,786 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-14 13:46:59] 2025-10-14 04:46:24,786 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-14 13:46:59] 2025-10-14 04:46:24,786 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-14 13:46:59] 2025-10-14 04:46:24,786 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-14 13:46:59] 2025-10-14 04:46:24,786 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-14 13:46:59] 2025-10-14 04:46:24,786 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-14 13:46:59] 2025-10-14 04:46:24,786 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-14 13:46:59] 2025-10-14 04:46:24,787 | INFO     | job 6837961067 has completed (purged errors)
[2025-10-14 13:46:59] 2025-10-14 04:46:24,787 | INFO     | overall cleanup function is called
[2025-10-14 13:46:59] 2025-10-14 04:46:25,793 | INFO     | --- collectZombieJob: --- 10, [4175328]
[2025-10-14 13:46:59] 2025-10-14 04:46:25,793 | INFO     | zombie collector waiting for pid 4175328
[2025-10-14 13:46:59] 2025-10-14 04:46:25,793 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-14 13:46:59] 2025-10-14 04:46:25,793 | INFO     | collected zombie processes
[2025-10-14 13:46:59] 2025-10-14 04:46:25,793 | INFO     | will attempt to kill all subprocesses of pid=4175328
[2025-10-14 13:46:59] 2025-10-14 04:46:25,859 | INFO     | process IDs to be killed: [4175328] (in reverse order)
[2025-10-14 13:46:59] 2025-10-14 04:46:25,877 | WARNING  | found no corresponding commands to process id(s)
[2025-10-14 13:46:59] 2025-10-14 04:46:25,878 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-14 13:46:59] 2025-10-14 04:46:25,880 | INFO     | did not find any defunct processes belonging to 4175328
[2025-10-14 13:46:59] 2025-10-14 04:46:25,882 | INFO     | did not find any defunct processes belonging to 4175328
[2025-10-14 13:46:59] 2025-10-14 04:46:25,882 | INFO     | ready for new job
[2025-10-14 13:46:59] 2025-10-14 04:46:25,882 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-14 13:46:59] 2025-10-14 04:46:25,883 | INFO     | ***************************************
[2025-10-14 13:46:59] 2025-10-14 04:46:25,883 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-14 13:46:59] 2025-10-14 04:46:25,883 | INFO     | ***************************************
[2025-10-14 13:46:59] 2025-10-14 04:46:25,883 | INFO     | 
[2025-10-14 13:46:59] 2025-10-14 04:46:25,884 | INFO     | architecture information:
[2025-10-14 13:46:59] 2025-10-14 04:46:25,884 | INFO     | executing command: cat /etc/os-release
[2025-10-14 13:46:59] 2025-10-14 04:46:25,890 | INFO     | cat /etc/os-release:
[2025-10-14 13:46:59] NAME="CentOS Linux"
[2025-10-14 13:46:59] VERSION="7 (Core)"
[2025-10-14 13:46:59] ID="centos"
[2025-10-14 13:46:59] ID_LIKE="rhel fedora"
[2025-10-14 13:46:59] VERSION_ID="7"
[2025-10-14 13:46:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-14 13:46:59] ANSI_COLOR="0;31"
[2025-10-14 13:46:59] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-14 13:46:59] HOME_URL="https://www.centos.org/"
[2025-10-14 13:46:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-14 13:46:59] 
[2025-10-14 13:46:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-14 13:46:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-14 13:46:59] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-14 13:46:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-14 13:46:59] 
[2025-10-14 13:46:59] 2025-10-14 04:46:25,890 | INFO     | ***************************************
[2025-10-14 13:46:59] 2025-10-14 04:46:26,392 | INFO     | executing command: df -mP /var/lib/boinc/slots/1
[2025-10-14 13:46:59] 2025-10-14 04:46:26,400 | INFO     | sufficient remaining disk space (110548221952 B)
[2025-10-14 13:46:59] 2025-10-14 04:46:26,400 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-14 13:46:59] 2025-10-14 04:46:26,400 | INFO     | current server update state: UPDATING_FINAL
[2025-10-14 13:46:59] 2025-10-14 04:46:26,400 | INFO     | update_server=False
[2025-10-14 13:46:59] 2025-10-14 04:46:26,400 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-14 13:46:59] 2025-10-14 04:46:26,518 | INFO     | all job control threads have been joined
[2025-10-14 13:46:59] 2025-10-14 04:46:26,595 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-14 13:46:59] 2025-10-14 04:46:26,656 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-14 13:46:59] 2025-10-14 04:46:26,656 | INFO     | aborting loop
[2025-10-14 13:46:59] 2025-10-14 04:46:27,116 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-14 13:46:59] 2025-10-14 04:46:27,405 | INFO     | [job] retrieve thread has finished
[2025-10-14 13:46:59] 2025-10-14 04:46:27,410 | INFO     | all data control threads have been joined
[2025-10-14 13:46:59] 2025-10-14 04:46:27,443 | INFO     | [job] validate thread has finished
[2025-10-14 13:46:59] 2025-10-14 04:46:27,456 | INFO     | [payload] validate_pre thread has finished
[2025-10-14 13:46:59] 2025-10-14 04:46:27,523 | INFO     | [job] control thread has finished
[2025-10-14 13:46:59] 2025-10-14 04:46:27,579 | INFO     | all payload control threads have been joined
[2025-10-14 13:46:59] 2025-10-14 04:46:27,662 | INFO     | [job] job monitor thread has finished
[2025-10-14 13:46:59] 2025-10-14 04:46:27,883 | INFO     | [payload] execute_payloads thread has finished
[2025-10-14 13:46:59] 2025-10-14 04:46:27,992 | INFO     | [payload] failed_post thread has finished
[2025-10-14 13:46:59] 2025-10-14 04:46:27,997 | INFO     | [data] copytool_in thread has finished
[2025-10-14 13:46:59] 2025-10-14 04:46:28,415 | INFO     | [data] control thread has finished
[2025-10-14 13:46:59] 2025-10-14 04:46:28,471 | INFO     | [payload] validate_post thread has finished
[2025-10-14 13:46:59] 2025-10-14 04:46:28,584 | INFO     | [payload] control thread has finished
[2025-10-14 13:46:59] 2025-10-14 04:46:28,846 | INFO     | [job] create_data_payload thread has finished
[2025-10-14 13:46:59] 2025-10-14 04:46:29,121 | INFO     | [data] copytool_out thread has finished
[2025-10-14 13:46:59] 2025-10-14 04:46:29,297 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-14 13:46:59] 2025-10-14 04:46:30,303 | INFO     | [job] queue monitor thread has finished
[2025-10-14 13:46:59] 2025-10-14 04:46:30,600 | INFO     | [data] queue_monitor thread has finished
[2025-10-14 13:46:59] 2025-10-14 04:46:37,239 | INFO     | job.realtimelogging is not enabled
[2025-10-14 13:46:59] 2025-10-14 04:46:38,244 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-14 13:46:59] 2025-10-14 04:46:52,604 | INFO     | [monitor] cgroup control has ended
[2025-10-14 13:46:59] 2025-10-14 04:46:54,512 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139924939896640)>', '<ExcThread(monitor, started 139924321855232)>']
[2025-10-14 13:46:59] 2025-10-14 04:46:57,125 | INFO     | PID=4168586 has CPU usage=0.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-14 13:46:59] 2025-10-14 04:46:57,125 | INFO     | .. there are 2 such processes running
[2025-10-14 13:46:59] 2025-10-14 04:46:57,125 | INFO     | found 0 job(s) in 20 queues
[2025-10-14 13:46:59] 2025-10-14 04:46:57,125 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-14 13:46:59] 2025-10-14 04:46:57,125 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-14 13:46:59] 2025-10-14 04:46:57,125 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-14 13:46:59] 2025-10-14 04:46:57,125 | INFO     | [monitor] control thread has ended
[2025-10-14 13:46:59] 2025-10-14 04:46:59,516 | INFO     | all workflow threads have been joined
[2025-10-14 13:46:59] 2025-10-14 04:46:59,516 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-14 13:46:59] 2025-10-14 04:46:59,516 | INFO     | traces error code: 0
[2025-10-14 13:46:59] 2025-10-14 04:46:59,517 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-14 13:46:59] 2025-10-14 04:46:59,561 [wrapper] ==== pilot stdout END ====
[2025-10-14 13:46:59] 2025-10-14 04:46:59,562 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-14 13:46:59] 2025-10-14 04:46:59,563 [wrapper] pilotpid: 4168586
[2025-10-14 13:46:59] 2025-10-14 04:46:59,564 [wrapper] Pilot exit status: 0
[2025-10-14 13:46:59] 2025-10-14 04:46:59,568 [wrapper] pandaids: 6837961067
[2025-10-14 13:46:59] 2025-10-14 04:46:59,579 [wrapper] cleanup supervisor_pilot   15991 4168587
[2025-10-14 13:46:59] 2025-10-14 04:46:59,580 [wrapper] Test setup, not cleaning
[2025-10-14 13:46:59] 2025-10-14 04:46:59,581 [wrapper] apfmon messages muted
[2025-10-14 13:46:59] 2025-10-14 04:46:59,582 [wrapper] ==== wrapper stdout END ====
[2025-10-14 13:46:59] 2025-10-14 04:46:59,583 [wrapper] ==== wrapper stderr END ====
[2025-10-14 13:46:59]  *** Error codes and diagnostics ***
[2025-10-14 13:46:59]     "exeErrorCode": 0,
[2025-10-14 13:46:59]     "exeErrorDiag": "",
[2025-10-14 13:46:59]     "pilotErrorCode": 0,
[2025-10-14 13:46:59]     "pilotErrorDiag": "",
[2025-10-14 13:46:59]  *** Listing of results directory ***
[2025-10-14 13:46:59] total 413952
[2025-10-14 13:46:59] -rw-r--r--. 1 boinc boinc    557409 Oct 11 11:41 pilot3.tar.gz
[2025-10-14 13:46:59] -rw-r--r--. 1 boinc boinc      5112 Oct 11 11:44 queuedata.json
[2025-10-14 13:46:59] -rwx------. 1 boinc boinc     36292 Oct 11 11:46 runpilot2-wrapper.sh
[2025-10-14 13:46:59] -rw-r--r--. 1 boinc boinc       100 Oct 14 12:26 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-14 13:46:59] -rwxr-xr-x. 1 boinc boinc      7986 Oct 14 12:26 run_atlas
[2025-10-14 13:46:59] -rw-r--r--. 1 boinc boinc       105 Oct 14 12:26 job.xml
[2025-10-14 13:46:59] -rw-r--r--. 1 boinc boinc      9345 Oct 14 12:26 init_data.xml
[2025-10-14 13:46:59] -rw-r--r--. 2 boinc boinc 223993169 Oct 14 12:26 EVNT.46676267._001997.pool.root.1
[2025-10-14 13:46:59] -rw-r--r--. 2 boinc boinc     15120 Oct 14 12:26 start_atlas.sh
[2025-10-14 13:46:59] drwxrwx--x. 2 boinc boinc        68 Oct 14 12:26 shared
[2025-10-14 13:46:59] -rw-r--r--. 2 boinc boinc    569679 Oct 14 12:26 input.tar.gz
[2025-10-14 13:46:59] -rw-r--r--. 1 boinc boinc         0 Oct 14 12:26 boinc_lockfile
[2025-10-14 13:46:59] -rw-r--r--. 1 boinc boinc      2550 Oct 14 12:26 pandaJob.out
[2025-10-14 13:46:59] -rw-------. 1 boinc boinc    972807 Oct 14 12:26 agis_schedconf.cvmfs.json
[2025-10-14 13:46:59] -rw-------. 1 boinc boinc   1560580 Oct 14 12:26 agis_ddmendpoints.agis.ALL.json
[2025-10-14 13:46:59] drwx------. 5 boinc boinc      4096 Oct 14 12:26 pilot3
[2025-10-14 13:46:59] -rw-------. 1 boinc boinc 193986681 Oct 14 13:45 HITS.46676269._049554.pool.root.1
[2025-10-14 13:46:59] -rw-------. 1 boinc boinc      1015 Oct 14 13:45 memory_monitor_summary.json
[2025-10-14 13:46:59] -rw-r--r--. 1 boinc boinc       529 Oct 14 13:46 boinc_task_state.xml
[2025-10-14 13:46:59] -rw-------. 1 boinc boinc    296265 Oct 14 13:46 log.46676269._049554.job.log.tgz.1
[2025-10-14 13:46:59] -rw-------. 1 boinc boinc        95 Oct 14 13:46 pilot_heartbeat.json
[2025-10-14 13:46:59] -rw-------. 1 boinc boinc      7766 Oct 14 13:46 heartbeat.json
[2025-10-14 13:46:59] -rw-r--r--. 1 boinc boinc      8192 Oct 14 13:46 boinc_mmap_file
[2025-10-14 13:46:59] -rw-r--r--. 1 boinc boinc        27 Oct 14 13:46 wrapper_checkpoint.txt
[2025-10-14 13:46:59] -rw-------. 1 boinc boinc      4896 Oct 14 13:46 pilotlog.txt
[2025-10-14 13:46:59] -rw-------. 1 boinc boinc    712432 Oct 14 13:46 log.46676269._049554.job.log.1
[2025-10-14 13:46:59] -rw-------. 1 boinc boinc       357 Oct 14 13:46 output.list
[2025-10-14 13:46:59] -rw-r--r--. 1 boinc boinc       620 Oct 14 13:46 runtime_log
[2025-10-14 13:46:59] -rw-------. 1 boinc boinc   1024000 Oct 14 13:46 result.tar.gz
[2025-10-14 13:46:59] -rw-------. 1 boinc boinc       638 Oct 14 13:46 wtqNDmgneR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmtAfNDm4eLmCo.diag
[2025-10-14 13:46:59] -rw-r--r--. 1 boinc boinc      8651 Oct 14 13:46 runtime_log.err
[2025-10-14 13:46:59] -rw-r--r--. 1 boinc boinc     22298 Oct 14 13:46 stderr.txt
[2025-10-14 13:46:59] HITS file was successfully produced:
[2025-10-14 13:46:59] -rw-------. 1 boinc boinc 193986681 Oct 14 13:45 shared/HITS.pool.root.1
[2025-10-14 13:46:59]  *** Contents of shared directory: ***
[2025-10-14 13:46:59] total 409764
[2025-10-14 13:46:59] -rw-r--r--. 2 boinc boinc 223993169 Oct 14 12:26 ATLAS.root_0
[2025-10-14 13:46:59] -rw-r--r--. 2 boinc boinc     15120 Oct 14 12:26 start_atlas.sh
[2025-10-14 13:46:59] -rw-r--r--. 2 boinc boinc    569679 Oct 14 12:26 input.tar.gz
[2025-10-14 13:46:59] -rw-------. 1 boinc boinc 193986681 Oct 14 13:45 HITS.pool.root.1
[2025-10-14 13:46:59] -rw-------. 1 boinc boinc   1024000 Oct 14 13:46 result.tar.gz
13:47:00 (4162664): run_atlas exited; CPU time 26073.705743
13:47:00 (4162664): called boinc_finish(0)

</stderr_txt>
]]>

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