Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
18:01:59 (1760177): wrapper (7.7.26015): starting
18:01:59 (1760177): wrapper: running run_atlas (--nthreads 4)
[2025-10-11 18:01:59] Arguments: --nthreads 4
[2025-10-11 18:01:59] Threads: 4
[2025-10-11 18:01:59] Checking for CVMFS
[2025-10-11 18:01:59] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 18:01:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 18:01:59] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 18:01:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 18:01:59] 2.9.2.0 742250 2950 95056 151589 1 57 27871422 36864000 0 130560 0 2620301 99.991 102921 1087 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-11 18:01:59] CVMFS is ok
[2025-10-11 18:01:59] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 18:01:59] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 18:01:59] Further information can be found at the LHC@home message board.
[2025-10-11 18:01:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 18:01:59] Checking for apptainer binary...
[2025-10-11 18:01:59] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 18:01:59] Running /usr/bin/apptainer --version
[2025-10-11 18:02:00] apptainer version 1.4.1-1.1
[2025-10-11 18:02:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 18:02:00] thA381
[2025-10-11 18:02:00] apptainer works
[2025-10-11 18:02:00] Set ATHENA_PROC_NUMBER=4
[2025-10-11 18:02:00] Set ATHENA_CORE_NUMBER=4
[2025-10-11 18:02:00] Starting ATLAS job with PandaID=6837932025
[2025-10-11 18:02:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-11 19:13:24]  *** The last 200 lines of the pilot log: ***
[2025-10-11 19:13:24] 2025-10-11 17:12:53,127 | INFO     | --- collectZombieJob: --- 10, [1770550]
[2025-10-11 19:13:24] 2025-10-11 17:12:53,127 | INFO     | zombie collector waiting for pid 1770550
[2025-10-11 19:13:24] 2025-10-11 17:12:53,127 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-11 19:13:24] 2025-10-11 17:12:53,127 | INFO     | collected zombie processes
[2025-10-11 19:13:24] 2025-10-11 17:12:53,127 | INFO     | will attempt to kill all subprocesses of pid=1770550
[2025-10-11 19:13:24] 2025-10-11 17:12:53,172 | INFO     | process IDs to be killed: [1770550] (in reverse order)
[2025-10-11 19:13:24] 2025-10-11 17:12:53,205 | WARNING  | found no corresponding commands to process id(s)
[2025-10-11 19:13:24] 2025-10-11 17:12:53,206 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-11 19:13:24] 2025-10-11 17:12:53,207 | INFO     | did not find any defunct processes belonging to 1770550
[2025-10-11 19:13:24] 2025-10-11 17:12:53,209 | INFO     | did not find any defunct processes belonging to 1770550
[2025-10-11 19:13:24] 2025-10-11 17:12:53,209 | INFO     | ready for new job
[2025-10-11 19:13:24] 2025-10-11 17:12:53,209 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-11 19:13:24] 2025-10-11 17:12:53,210 | INFO     | ***************************************
[2025-10-11 19:13:24] 2025-10-11 17:12:53,210 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-11 19:13:24] 2025-10-11 17:12:53,210 | INFO     | ***************************************
[2025-10-11 19:13:24] 2025-10-11 17:12:53,210 | INFO     | 
[2025-10-11 19:13:24] 2025-10-11 17:12:53,210 | INFO     | architecture information:
[2025-10-11 19:13:24] 2025-10-11 17:12:53,210 | INFO     | executing command: cat /etc/os-release
[2025-10-11 19:13:24] 2025-10-11 17:12:53,225 | INFO     | cat /etc/os-release:
[2025-10-11 19:13:24] NAME="CentOS Linux"
[2025-10-11 19:13:24] VERSION="7 (Core)"
[2025-10-11 19:13:24] ID="centos"
[2025-10-11 19:13:24] ID_LIKE="rhel fedora"
[2025-10-11 19:13:24] VERSION_ID="7"
[2025-10-11 19:13:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-11 19:13:24] ANSI_COLOR="0;31"
[2025-10-11 19:13:24] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-11 19:13:24] HOME_URL="https://www.centos.org/"
[2025-10-11 19:13:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-11 19:13:24] 
[2025-10-11 19:13:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-11 19:13:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-11 19:13:24] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-11 19:13:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-11 19:13:24] 
[2025-10-11 19:13:24] 2025-10-11 17:12:53,225 | INFO     | ***************************************
[2025-10-11 19:13:24] 2025-10-11 17:12:53,728 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-11 19:13:24] 2025-10-11 17:12:53,747 | INFO     | sufficient remaining disk space (231681818624 B)
[2025-10-11 19:13:24] 2025-10-11 17:12:53,747 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-11 19:13:24] 2025-10-11 17:12:53,747 | INFO     | current server update state: UPDATING_FINAL
[2025-10-11 19:13:24] 2025-10-11 17:12:53,747 | INFO     | update_server=False
[2025-10-11 19:13:24] 2025-10-11 17:12:53,747 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-11 19:13:24] 2025-10-11 17:12:53,747 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-11 19:13:24] 2025-10-11 17:12:53,851 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-11 19:13:24] 2025-10-11 17:12:53,880 | INFO     | all payload control threads have been joined
[2025-10-11 19:13:24] 2025-10-11 17:12:54,049 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-11 19:13:24] 2025-10-11 17:12:54,049 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-11 19:13:24] 2025-10-11 17:12:54,049 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-11 19:13:24] 2025-10-11 17:12:54,049 | INFO     | will abort loop
[2025-10-11 19:13:24] 2025-10-11 17:12:54,484 | INFO     | all job control threads have been joined
[2025-10-11 19:13:24] 2025-10-11 17:12:54,501 | INFO     | all data control threads have been joined
[2025-10-11 19:13:24] 2025-10-11 17:12:54,753 | INFO     | [job] queue monitor thread has finished
[2025-10-11 19:13:24] 2025-10-11 17:12:54,753 | INFO     | [job] retrieve thread has finished
[2025-10-11 19:13:24] 2025-10-11 17:12:54,886 | INFO     | [payload] control thread has finished
[2025-10-11 19:13:24] 2025-10-11 17:12:55,016 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-11 19:13:24] 2025-10-11 17:12:55,055 | INFO     | [job] job monitor thread has finished
[2025-10-11 19:13:24] 2025-10-11 17:12:55,168 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-11 19:13:24] 2025-10-11 17:12:55,240 | INFO     | [payload] validate_post thread has finished
[2025-10-11 19:13:24] 2025-10-11 17:12:55,359 | INFO     | [data] copytool_in thread has finished
[2025-10-11 19:13:24] 2025-10-11 17:12:55,490 | INFO     | [job] control thread has finished
[2025-10-11 19:13:24] 2025-10-11 17:12:55,507 | INFO     | [data] control thread has finished
[2025-10-11 19:13:24] 2025-10-11 17:12:55,853 | INFO     | [payload] failed_post thread has finished
[2025-10-11 19:13:24] 2025-10-11 17:12:56,004 | INFO     | [payload] execute_payloads thread has finished
[2025-10-11 19:13:24] 2025-10-11 17:12:56,086 | INFO     | [job] validate thread has finished
[2025-10-11 19:13:24] 2025-10-11 17:12:56,185 | INFO     | [job] create_data_payload thread has finished
[2025-10-11 19:13:24] 2025-10-11 17:12:56,227 | INFO     | [payload] validate_pre thread has finished
[2025-10-11 19:13:24] 2025-10-11 17:12:57,022 | INFO     | [data] copytool_out thread has finished
[2025-10-11 19:13:24] 2025-10-11 17:12:57,858 | INFO     | [data] queue_monitor thread has finished
[2025-10-11 19:13:24] 2025-10-11 17:13:13,193 | INFO     | [monitor] cgroup control has ended
[2025-10-11 19:13:24] 2025-10-11 17:13:15,009 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140339009951552)>', '<ExcThread(monitor, started 140338207364864)>']
[2025-10-11 19:13:24] 2025-10-11 17:13:20,035 | INFO     | all workflow threads have been joined
[2025-10-11 19:13:24] 2025-10-11 17:13:20,035 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-11 19:13:24] 2025-10-11 17:13:20,036 | INFO     | traces error code: 0
[2025-10-11 19:13:24] 2025-10-11 17:13:20,036 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-11 19:13:24] 2025-10-11 17:13:24,713 | INFO     | PID=1763961 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-11 19:13:24] 2025-10-11 17:13:24,714 | INFO     | found 0 job(s) in 20 queues
[2025-10-11 19:13:24] 2025-10-11 17:13:24,714 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-11 19:13:24] 2025-10-11 17:13:24,714 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-11 19:13:24] 2025-10-11 17:13:24,714 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-11 19:13:24] 2025-10-11 17:13:24,714 | INFO     | [monitor] control thread has ended
[2025-10-11 19:13:24] 2025-10-11 17:13:24,790 [wrapper] ==== pilot stdout END ====
[2025-10-11 19:13:24] 2025-10-11 17:13:24,794 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-11 19:13:24] 2025-10-11 17:13:24,798 [wrapper] pilotpid: 1763961
[2025-10-11 19:13:24] 2025-10-11 17:13:24,802 [wrapper] Pilot exit status: 0
[2025-10-11 19:13:24] 2025-10-11 17:13:24,815 [wrapper] pandaids: 6837932025
[2025-10-11 19:13:24] 2025-10-11 17:13:24,837 [wrapper] cleanup supervisor_pilot 1780243 1763962
[2025-10-11 19:13:24] 2025-10-11 17:13:24,840 [wrapper] Test setup, not cleaning
[2025-10-11 19:13:24] 2025-10-11 17:13:24,844 [wrapper] apfmon messages muted
[2025-10-11 19:13:24] 2025-10-11 17:13:24,848 [wrapper] ==== wrapper stdout END ====
[2025-10-11 19:13:24] 2025-10-11 17:13:24,852 [wrapper] ==== wrapper stderr END ====
[2025-10-11 19:13:24]  *** Error codes and diagnostics ***
[2025-10-11 19:13:24]     "exeErrorCode": 0,
[2025-10-11 19:13:24]     "exeErrorDiag": "",
[2025-10-11 19:13:24]     "pilotErrorCode": 0,
[2025-10-11 19:13:24]     "pilotErrorDiag": "",
[2025-10-11 19:13:24]  *** Listing of results directory ***
[2025-10-11 19:13:24] total 412404
[2025-10-11 19:13:24] -rw-r--r-- 1 boinc boinc    557409 Oct 11 03:35 pilot3.tar.gz
[2025-10-11 19:13:24] -rwx------ 1 boinc boinc     36292 Oct 11 03:44 runpilot2-wrapper.sh
[2025-10-11 19:13:24] -rw-r--r-- 1 boinc boinc      5112 Oct 11 03:44 queuedata.json
[2025-10-11 19:13:24] -rw-r--r-- 1 boinc boinc       100 Oct 11 18:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-11 19:13:24] -rwxr-xr-x 1 boinc boinc      7986 Oct 11 18:01 run_atlas
[2025-10-11 19:13:24] -rw-r--r-- 1 boinc boinc       105 Oct 11 18:01 job.xml
[2025-10-11 19:13:24] -rw-r--r-- 2 boinc boinc 221416858 Oct 11 18:01 EVNT.46676267._001960.pool.root.1
[2025-10-11 19:13:24] drwxrwx--x 2 boinc boinc      4096 Oct 11 18:01 shared
[2025-10-11 19:13:24] -rw-r--r-- 2 boinc boinc    569681 Oct 11 18:01 input.tar.gz
[2025-10-11 19:13:24] -rw-r--r-- 2 boinc boinc     15120 Oct 11 18:01 start_atlas.sh
[2025-10-11 19:13:24] -rw-r--r-- 1 boinc boinc         0 Oct 11 18:01 boinc_setup_complete
[2025-10-11 19:13:24] -rw-r--r-- 1 boinc boinc      6375 Oct 11 18:01 init_data.xml
[2025-10-11 19:13:24] -rw-r--r-- 1 boinc boinc         0 Oct 11 18:01 boinc_lockfile
[2025-10-11 19:13:24] -rw-r--r-- 1 boinc boinc      2550 Oct 11 18:02 pandaJob.out
[2025-10-11 19:13:24] -rw------- 1 boinc boinc    975512 Oct 11 18:02 agis_schedconf.cvmfs.json
[2025-10-11 19:13:24] -rw------- 1 boinc boinc   1560580 Oct 11 18:02 agis_ddmendpoints.agis.ALL.json
[2025-10-11 19:13:24] drwx------ 5 boinc boinc      4096 Oct 11 18:02 pilot3
[2025-10-11 19:13:24] -rw------- 1 boinc boinc 195208468 Oct 11 19:12 HITS.46676269._048607.pool.root.1
[2025-10-11 19:13:24] -rw-r--r-- 1 boinc boinc       529 Oct 11 19:12 boinc_task_state.xml
[2025-10-11 19:13:24] -rw------- 1 boinc boinc        95 Oct 11 19:12 pilot_heartbeat.json
[2025-10-11 19:13:24] -rw------- 1 boinc boinc      1019 Oct 11 19:12 memory_monitor_summary.json
[2025-10-11 19:13:24] -rw------- 1 boinc boinc    264184 Oct 11 19:12 log.46676269._048607.job.log.tgz.1
[2025-10-11 19:13:24] -rw------- 1 boinc boinc      7757 Oct 11 19:12 heartbeat.json
[2025-10-11 19:13:24] -rw-r--r-- 1 boinc boinc        27 Oct 11 19:13 wrapper_checkpoint.txt
[2025-10-11 19:13:24] -rw-r--r-- 1 boinc boinc      8192 Oct 11 19:13 boinc_mmap_file
[2025-10-11 19:13:24] -rw------- 1 boinc boinc       747 Oct 11 19:13 pilotlog.txt
[2025-10-11 19:13:24] -rw------- 1 boinc boinc    630702 Oct 11 19:13 log.46676269._048607.job.log.1
[2025-10-11 19:13:24] -rw------- 1 boinc boinc       357 Oct 11 19:13 output.list
[2025-10-11 19:13:24] -rw-r--r-- 1 boinc boinc       620 Oct 11 19:13 runtime_log
[2025-10-11 19:13:24] -rw------- 1 boinc boinc    911360 Oct 11 19:13 result.tar.gz
[2025-10-11 19:13:24] -rw-r--r-- 1 boinc boinc      8777 Oct 11 19:13 runtime_log.err
[2025-10-11 19:13:24] -rw------- 1 boinc boinc       658 Oct 11 19:13 aqNLDmfpdR8n9Rq4apOajLDm4fhM0noT9bVof3QYDmxuQMDmxwuWSo.diag
[2025-10-11 19:13:24] -rw-r--r-- 1 boinc boinc     10843 Oct 11 19:13 stderr.txt
[2025-10-11 19:13:24] HITS file was successfully produced:
[2025-10-11 19:13:24] -rw------- 1 boinc boinc 195208468 Oct 11 19:12 shared/HITS.pool.root.1
[2025-10-11 19:13:24]  *** Contents of shared directory: ***
[2025-10-11 19:13:24] total 408340
[2025-10-11 19:13:24] -rw-r--r-- 2 boinc boinc 221416858 Oct 11 18:01 ATLAS.root_0
[2025-10-11 19:13:24] -rw-r--r-- 2 boinc boinc    569681 Oct 11 18:01 input.tar.gz
[2025-10-11 19:13:24] -rw-r--r-- 2 boinc boinc     15120 Oct 11 18:01 start_atlas.sh
[2025-10-11 19:13:24] -rw------- 1 boinc boinc 195208468 Oct 11 19:12 HITS.pool.root.1
[2025-10-11 19:13:24] -rw------- 1 boinc boinc    911360 Oct 11 19:13 result.tar.gz
19:13:26 (1760177): run_atlas exited; CPU time 15845.013827
19:13:26 (1760177): called boinc_finish(0)

</stderr_txt>
]]>

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