Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
21:58:06 (62944): wrapper (7.7.26015): starting
21:58:06 (62944): wrapper: running run_atlas (--nthreads 6)
[2025-10-11 21:58:06] Arguments: --nthreads 6
[2025-10-11 21:58:06] Threads: 6
[2025-10-11 21:58:06] Checking for CVMFS
[2025-10-11 21:58:08] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 21:58:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 21:58:09] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 21:58:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 21:58:09] 2.13.2.0 63144 0 30956 151594 3 1 16138628 81920001 0 130560 0 0 0.000 1291 9355 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://147.213.204.101:3128 1
[2025-10-11 21:58:09] CVMFS is ok
[2025-10-11 21:58:09] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 21:58:09] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 21:58:09] Further information can be found at the LHC@home message board.
[2025-10-11 21:58:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 21:58:09] Checking for apptainer binary...
[2025-10-11 21:58:09] which: no apptainer in (/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/var/lib/snapd/snap/bin)
[2025-10-11 21:58:09] apptainer is not installed, using version from CVMFS
[2025-10-11 21:58:09] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 21:58:10] monitor-atlas.iep
[2025-10-11 21:58:10] apptainer works
[2025-10-11 21:58:10] Set ATHENA_PROC_NUMBER=6
[2025-10-11 21:58:10] Set ATHENA_CORE_NUMBER=6
[2025-10-11 21:58:10] Starting ATLAS job with PandaID=6837873692
[2025-10-11 21:58:10] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-11 22:49:25]  *** The last 200 lines of the pilot log: ***
[2025-10-11 22:49:25]  storage_token=
[2025-10-11 22:49:25]  surl=/var/lib/boinc/slots/6/PanDA_Pilot-6837873692/log.46676269._046544.job.log.tgz.1
[2025-10-11 22:49:25]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/fb/70/log.46676269._046544.job.log.tgz.1
[2025-10-11 22:49:25]  workdir=None
[2025-10-11 22:49:25] ]
[2025-10-11 22:49:25] 2025-10-11 20:48:22,732 | INFO     | transferring file log.46676269._046544.job.log.tgz.1 from /var/lib/boinc/slots/6/PanDA_Pilot-6837873692/log.46676269._046544.job.log.tgz.1 to /var/lib/boinc/slots/
[2025-10-11 22:49:25] 2025-10-11 20:48:22,732 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/6/PanDA_Pilot-6837873692/log.46676269._046544.job.log.tgz.1 /var/lib/boinc/slots/6/log.46676269._046544.job
[2025-10-11 22:49:25] 2025-10-11 20:48:22,739 | INFO     | adding to output.list: log.46676269._046544.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/fb/70/log.46676269._046544.job.log.tg
[2025-10-11 22:49:25] 2025-10-11 20:48:22,739 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-11 22:49:25] 2025-10-11 20:48:22,740 | INFO     | summary of transferred files:
[2025-10-11 22:49:25] 2025-10-11 20:48:22,740 | INFO     |  -- lfn=log.46676269._046544.job.log.tgz.1, status_code=0, status=transferred
[2025-10-11 22:49:25] 2025-10-11 20:48:22,740 | INFO     | stage-out finished correctly
[2025-10-11 22:49:25] 2025-10-11 20:48:23,110 | INFO     | time since job start (3007s) is within the limit (172800.0s)
[2025-10-11 22:49:25] 2025-10-11 20:48:24,602 | WARNING  | process 73690 can no longer be monitored (due to stat problems) - aborting
[2025-10-11 22:49:25] 2025-10-11 20:48:24,602 | INFO     | using path: /var/lib/boinc/slots/6/PanDA_Pilot-6837873692/memory_monitor_summary.json (trf name=prmon)
[2025-10-11 22:49:25] 2025-10-11 20:48:24,633 | INFO     | number of running child processes to parent process 73690: 1
[2025-10-11 22:49:25] 2025-10-11 20:48:24,633 | INFO     | maximum number of monitored processes: 6
[2025-10-11 22:49:25] 2025-10-11 20:48:25,115 | INFO     | time since job start (3009s) is within the limit (172800.0s)
[2025-10-11 22:49:25] 2025-10-11 20:48:25,817 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-11 22:49:25] 2025-10-11 20:48:26,495 | INFO     | job 6837873692 has state=finished
[2025-10-11 22:49:25] 2025-10-11 20:48:26,495 | INFO     | preparing for final server update for job 6837873692 in state='finished'
[2025-10-11 22:49:25] 2025-10-11 20:48:27,121 | INFO     | time since job start (3011s) is within the limit (172800.0s)
[2025-10-11 22:49:25] 2025-10-11 20:48:27,136 | INFO     | monitor loop #232: job 0:6837873692 is in state 'finished'
[2025-10-11 22:49:25] 2025-10-11 20:48:27,136 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 22:49:25] 2025-10-11 20:48:27,280 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-10-11 22:49:25] 2025-10-11 20:48:27,280 | INFO     | this job has now completed (state=finished)
[2025-10-11 22:49:25] 2025-10-11 20:48:27,280 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-11 22:49:25] 2025-10-11 20:48:27,280 | INFO     | log transfer has been attempted: DONE
[2025-10-11 22:49:25] 2025-10-11 20:48:27,280 | INFO     | job 6837873692 has finished - writing final server update
[2025-10-11 22:49:25] 2025-10-11 20:48:27,280 | INFO     | total number of processed events: 400 (read)
[2025-10-11 22:49:25] 2025-10-11 20:48:27,281 | INFO     | executing command: lscpu
[2025-10-11 22:49:25] 2025-10-11 20:48:27,288 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-11 22:49:25] 2025-10-11 20:48:29,125 | INFO     | time since job start (3013s) is within the limit (172800.0s)
[2025-10-11 22:49:25] 2025-10-11 20:48:29,638 | INFO     | monitor loop #233: job 0:6837873692 is in state 'finished'
[2025-10-11 22:49:25] 2025-10-11 20:48:29,638 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 22:49:25] 2025-10-11 20:48:29,913 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-11 22:49:25] 2025-10-11 20:48:29,913 | INFO     | found 6 cores (6 cores per socket, 1 socket) , CPU MHz: 4299.758333333333
[2025-10-11 22:49:25] 2025-10-11 20:48:29,914 | INFO     | using path: /var/lib/boinc/slots/6/PanDA_Pilot-6837873692/memory_monitor_summary.json (trf name=prmon)
[2025-10-11 22:49:25] 2025-10-11 20:48:29,914 | INFO     | extracted standard info from prmon json
[2025-10-11 22:49:25] 2025-10-11 20:48:29,914 | INFO     | extracted standard memory fields from prmon json
[2025-10-11 22:49:25] 2025-10-11 20:48:29,914 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-11 22:49:25] 2025-10-11 20:48:29,914 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-11 22:49:25] 2025-10-11 20:48:29,914 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-11 22:49:25] 2025-10-11 20:48:29,915 | INFO     | fitting pss+swap vs Time
[2025-10-11 22:49:25] 2025-10-11 20:48:29,915 | INFO     | sum of square deviations: 22960430.5
[2025-10-11 22:49:25] 2025-10-11 20:48:29,915 | INFO     | sum of deviations: -3987599249.5
[2025-10-11 22:49:25] 2025-10-11 20:48:29,915 | INFO     | mean x: 1760214271.5
[2025-10-11 22:49:25] 2025-10-11 20:48:29,915 | INFO     | mean y: 2591300.6428571427
[2025-10-11 22:49:25] 2025-10-11 20:48:29,915 | INFO     | -- intersect: 305703702087.41974
[2025-10-11 22:49:25] 2025-10-11 20:48:29,915 | INFO     | intersect: 305703702087.41974
[2025-10-11 22:49:25] 2025-10-11 20:48:29,915 | INFO     | chi2: 0.08871926630953769
[2025-10-11 22:49:25] 2025-10-11 20:48:29,915 | INFO     | -- intersect: 305703702087.41974
[2025-10-11 22:49:25] 2025-10-11 20:48:29,915 | INFO     | current memory leak: -173.67 B/s (using 42 data points, chi2=0.09)
[2025-10-11 22:49:25] 2025-10-11 20:48:29,915 | INFO     | could have reported an average CPU frequency of 4299 MHz (5 samples)
[2025-10-11 22:49:25] 2025-10-11 20:48:29,916 | INFO     | ..............................
[2025-10-11 22:49:25] 2025-10-11 20:48:29,916 | INFO     | . Timing measurements:
[2025-10-11 22:49:25] 2025-10-11 20:48:29,916 | INFO     | . get job = 0 s
[2025-10-11 22:49:25] 2025-10-11 20:48:29,916 | INFO     | . initial setup = 1 s
[2025-10-11 22:49:25] 2025-10-11 20:48:29,916 | INFO     | . payload setup = 2 s
[2025-10-11 22:49:25] 2025-10-11 20:48:29,916 | INFO     | . stage-in = 0 s
[2025-10-11 22:49:25] 2025-10-11 20:48:29,916 | INFO     | . payload execution = 2987 s
[2025-10-11 22:49:25] 2025-10-11 20:48:29,916 | INFO     | . stage-out = 0 s
[2025-10-11 22:49:25] 2025-10-11 20:48:29,916 | INFO     | . log creation = 0 s
[2025-10-11 22:49:25] 2025-10-11 20:48:29,916 | INFO     | ..............................
[2025-10-11 22:49:25] 2025-10-11 20:48:29,947 | INFO     | 
[2025-10-11 22:49:25] 2025-10-11 20:48:29,947 | INFO     | job summary report
[2025-10-11 22:49:25] 2025-10-11 20:48:29,947 | INFO     | --------------------------------------------------
[2025-10-11 22:49:25] 2025-10-11 20:48:29,947 | INFO     | PanDA job id: 6837873692
[2025-10-11 22:49:25] 2025-10-11 20:48:29,947 | INFO     | task id: 46676269
[2025-10-11 22:49:25] 2025-10-11 20:48:29,947 | INFO     | errors: (none)
[2025-10-11 22:49:25] 2025-10-11 20:48:29,947 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-11 22:49:25] 2025-10-11 20:48:29,947 | INFO     | pilot state: finished 
[2025-10-11 22:49:25] 2025-10-11 20:48:29,947 | INFO     | transexitcode: 0
[2025-10-11 22:49:25] 2025-10-11 20:48:29,947 | INFO     | exeerrorcode: 0
[2025-10-11 22:49:25] 2025-10-11 20:48:29,947 | INFO     | exeerrordiag: 
[2025-10-11 22:49:25] 2025-10-11 20:48:29,947 | INFO     | exitcode: 0
[2025-10-11 22:49:25] 2025-10-11 20:48:29,947 | INFO     | exitmsg: OK
[2025-10-11 22:49:25] 2025-10-11 20:48:29,947 | INFO     | cpuconsumptiontime: 16736 s
[2025-10-11 22:49:25] 2025-10-11 20:48:29,947 | INFO     | nevents: 400
[2025-10-11 22:49:25] 2025-10-11 20:48:29,947 | INFO     | neventsw: 0
[2025-10-11 22:49:25] 2025-10-11 20:48:29,948 | INFO     | pid: 73690
[2025-10-11 22:49:25] 2025-10-11 20:48:29,948 | INFO     | pgrp: 73690
[2025-10-11 22:49:25] 2025-10-11 20:48:29,948 | INFO     | corecount: 6
[2025-10-11 22:49:25] 2025-10-11 20:48:29,948 | INFO     | event service: False
[2025-10-11 22:49:25] 2025-10-11 20:48:29,948 | INFO     | sizes: {0: 2348857, 3: 2349119, 11: 2349147, 2993: 2383597, 2996: 2383597, 3000: 2383823}
[2025-10-11 22:49:25] 2025-10-11 20:48:29,948 | INFO     | --------------------------------------------------
[2025-10-11 22:49:25] 2025-10-11 20:48:29,948 | INFO     | 
[2025-10-11 22:49:25] 2025-10-11 20:48:29,948 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2025-10-11 22:49:25] 2025-10-11 20:48:29,956 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-11 22:49:25] 2025-10-11 20:48:29,956 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-11 22:49:25] 2025-10-11 20:48:29,956 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-11 22:49:25] 2025-10-11 20:48:29,956 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-11 22:49:25] 2025-10-11 20:48:29,956 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-11 22:49:25] 2025-10-11 20:48:29,957 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-11 22:49:25] 2025-10-11 20:48:29,957 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-11 22:49:25] 2025-10-11 20:48:29,957 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-11 22:49:25] 2025-10-11 20:48:29,957 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-11 22:49:25] 2025-10-11 20:48:29,957 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-11 22:49:25] 2025-10-11 20:48:29,957 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-11 22:49:25] 2025-10-11 20:48:29,957 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-11 22:49:25] 2025-10-11 20:48:29,957 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-11 22:49:25] 2025-10-11 20:48:29,957 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-11 22:49:25] 2025-10-11 20:48:29,957 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-11 22:49:25] 2025-10-11 20:48:29,957 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-11 22:49:25] 2025-10-11 20:48:29,957 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-11 22:49:25] 2025-10-11 20:48:29,957 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-11 22:49:25] 2025-10-11 20:48:29,957 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-11 22:49:25] 2025-10-11 20:48:29,957 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-11 22:49:25] 2025-10-11 20:48:29,957 | INFO     | job 6837873692 has completed (purged errors)
[2025-10-11 22:49:25] 2025-10-11 20:48:29,957 | INFO     | overall cleanup function is called
[2025-10-11 22:49:25] 2025-10-11 20:48:30,963 | INFO     | --- collectZombieJob: --- 10, [73690]
[2025-10-11 22:49:25] 2025-10-11 20:48:30,963 | INFO     | zombie collector waiting for pid 73690
[2025-10-11 22:49:25] 2025-10-11 20:48:30,963 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-11 22:49:25] 2025-10-11 20:48:30,963 | INFO     | collected zombie processes
[2025-10-11 22:49:25] 2025-10-11 20:48:30,963 | INFO     | will attempt to kill all subprocesses of pid=73690
[2025-10-11 22:49:25] 2025-10-11 20:48:30,996 | INFO     | process IDs to be killed: [73690] (in reverse order)
[2025-10-11 22:49:25] 2025-10-11 20:48:31,013 | WARNING  | found no corresponding commands to process id(s)
[2025-10-11 22:49:25] 2025-10-11 20:48:31,013 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-11 22:49:25] 2025-10-11 20:48:31,014 | INFO     | did not find any defunct processes belonging to 73690
[2025-10-11 22:49:25] 2025-10-11 20:48:31,015 | INFO     | did not find any defunct processes belonging to 73690
[2025-10-11 22:49:25] 2025-10-11 20:48:31,015 | INFO     | ready for new job
[2025-10-11 22:49:25] 2025-10-11 20:48:31,015 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-11 22:49:25] 2025-10-11 20:48:31,016 | INFO     | ***************************************
[2025-10-11 22:49:25] 2025-10-11 20:48:31,016 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-11 22:49:25] 2025-10-11 20:48:31,016 | INFO     | ***************************************
[2025-10-11 22:49:25] 2025-10-11 20:48:31,016 | INFO     | 
[2025-10-11 22:49:25] 2025-10-11 20:48:31,016 | INFO     | architecture information:
[2025-10-11 22:49:25] 2025-10-11 20:48:31,016 | INFO     | executing command: cat /etc/os-release
[2025-10-11 22:49:25] 2025-10-11 20:48:31,021 | INFO     | cat /etc/os-release:
[2025-10-11 22:49:25] NAME="CentOS Linux"
[2025-10-11 22:49:25] VERSION="7 (Core)"
[2025-10-11 22:49:25] ID="centos"
[2025-10-11 22:49:25] ID_LIKE="rhel fedora"
[2025-10-11 22:49:25] VERSION_ID="7"
[2025-10-11 22:49:25] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-11 22:49:25] ANSI_COLOR="0;31"
[2025-10-11 22:49:25] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-11 22:49:25] HOME_URL="https://www.centos.org/"
[2025-10-11 22:49:25] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-11 22:49:25] 
[2025-10-11 22:49:25] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-11 22:49:25] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-11 22:49:25] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-11 22:49:25] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-11 22:49:25] 
[2025-10-11 22:49:25] 2025-10-11 20:48:31,021 | INFO     | ***************************************
[2025-10-11 22:49:25] 2025-10-11 20:48:31,524 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2025-10-11 22:49:25] 2025-10-11 20:48:31,530 | INFO     | sufficient remaining disk space (870936739840 B)
[2025-10-11 22:49:25] 2025-10-11 20:48:31,530 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-11 22:49:25] 2025-10-11 20:48:31,530 | INFO     | current server update state: UPDATING_FINAL
[2025-10-11 22:49:25] 2025-10-11 20:48:31,530 | INFO     | update_server=False
[2025-10-11 22:49:25] 2025-10-11 20:48:31,530 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-11 22:49:25] 2025-10-11 20:48:31,530 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-11 22:49:25] 2025-10-11 20:48:31,531 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-11 22:49:25] 2025-10-11 20:48:31,531 | INFO     | aborting loop
[2025-10-11 22:49:25] 2025-10-11 20:48:31,531 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-11 22:49:25] 2025-10-11 20:48:31,850 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-11 22:49:25] 2025-10-11 20:48:32,178 | INFO     | all data control threads have been joined
[2025-10-11 22:49:25] 2025-10-11 20:48:32,254 | INFO     | all payload control threads have been joined
[2025-10-11 22:49:25] 2025-10-11 20:48:32,331 | INFO     | all job control threads have been joined
[2025-10-11 22:49:25] 2025-10-11 20:48:32,531 | INFO     | [job] job monitor thread has finished
[2025-10-11 22:49:25] 2025-10-11 20:48:32,535 | INFO     | [job] retrieve thread has finished
[2025-10-11 22:49:25] 2025-10-11 20:48:32,536 | INFO     | [job] queue monitor thread has finished
[2025-10-11 22:49:25] 2025-10-11 20:48:33,085 | INFO     | [payload] validate_post thread has finished
[2025-10-11 22:49:25] 2025-10-11 20:48:33,183 | INFO     | [data] control thread has finished
[2025-10-11 22:49:25] 2025-10-11 20:48:33,204 | INFO     | [data] copytool_in thread has finished
[2025-10-11 22:49:25] 2025-10-11 20:48:33,259 | INFO     | [payload] control thread has finished
[2025-10-11 22:49:25] 2025-10-11 20:48:33,336 | INFO     | [job] control thread has finished
[2025-10-11 22:49:25] 2025-10-11 20:48:33,534 | INFO     | [data] copytool_out thread has finished
[2025-10-11 22:49:25] 2025-10-11 20:48:33,715 | INFO     | [job] validate thread has finished
[2025-10-11 22:49:25] 2025-10-11 20:48:33,735 | INFO     | [payload] failed_post thread has finished
[2025-10-11 22:49:25] 2025-10-11 20:48:33,735 | INFO     | [job] create_data_payload thread has finished
[2025-10-11 22:49:25] 2025-10-11 20:48:33,848 | INFO     | [payload] validate_pre thread has finished
[2025-10-11 22:49:25] 2025-10-11 20:48:33,954 | INFO     | [payload] execute_payloads thread has finished
[2025-10-11 22:49:25] 2025-10-11 20:48:35,856 | INFO     | [data] queue_monitor thread has finished
[2025-10-11 22:49:25] 2025-10-11 20:48:42,330 | INFO     | job.realtimelogging is not enabled
[2025-10-11 22:49:25] 2025-10-11 20:48:43,333 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-11 22:49:25] 2025-10-11 20:49:01,213 | INFO     | 3016s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-10-11 22:49:25] 2025-10-11 20:49:02,260 | INFO     | PID=67147 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-11 22:49:25] 2025-10-11 20:49:02,260 | INFO     | found 0 job(s) in 20 queues
[2025-10-11 22:49:25] 2025-10-11 20:49:02,260 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-11 22:49:25] 2025-10-11 20:49:02,260 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-11 22:49:25] 2025-10-11 20:49:20,862 | INFO     | [monitor] cgroup control has ended
[2025-10-11 22:49:25] 2025-10-11 20:49:20,869 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139794724312896)>', '<ExcThread(monitor, started 139794172589824)>']
[2025-10-11 22:49:25] 2025-10-11 20:49:21,357 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-11 22:49:25] 2025-10-11 20:49:21,357 | INFO     | [monitor] control thread has ended
[2025-10-11 22:49:25] 2025-10-11 20:49:25,894 | INFO     | all workflow threads have been joined
[2025-10-11 22:49:25] 2025-10-11 20:49:25,894 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-11 22:49:25] 2025-10-11 20:49:25,894 | INFO     | traces error code: 0
[2025-10-11 22:49:25] 2025-10-11 20:49:25,894 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-11 22:49:25] 2025-10-11 20:49:25,936 [wrapper] ==== pilot stdout END ====
[2025-10-11 22:49:25] 2025-10-11 20:49:25,937 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-11 22:49:25] 2025-10-11 20:49:25,938 [wrapper] pilotpid: 67147
[2025-10-11 22:49:25] 2025-10-11 20:49:25,939 [wrapper] Pilot exit status: 0
[2025-10-11 22:49:25] 2025-10-11 20:49:25,942 [wrapper] pandaids: 6837873692
[2025-10-11 22:49:25] 2025-10-11 20:49:25,952 [wrapper] cleanup supervisor_pilot   90056 67148
[2025-10-11 22:49:25] 2025-10-11 20:49:25,954 [wrapper] Test setup, not cleaning
[2025-10-11 22:49:25] 2025-10-11 20:49:25,955 [wrapper] apfmon messages muted
[2025-10-11 22:49:25] 2025-10-11 20:49:25,955 [wrapper] ==== wrapper stdout END ====
[2025-10-11 22:49:25] 2025-10-11 20:49:25,956 [wrapper] ==== wrapper stderr END ====
[2025-10-11 22:49:25]  *** Error codes and diagnostics ***
[2025-10-11 22:49:25]     "exeErrorCode": 0,
[2025-10-11 22:49:25]     "exeErrorDiag": "",
[2025-10-11 22:49:25]     "pilotErrorCode": 0,
[2025-10-11 22:49:25]     "pilotErrorDiag": "",
[2025-10-11 22:49:25]  *** Listing of results directory ***
[2025-10-11 22:49:25] total 410352
[2025-10-11 22:49:25] -rw-r--r-- 1 boinc boinc    557409 Oct 11 00:56 pilot3.tar.gz
[2025-10-11 22:49:25] -rwx------ 1 boinc boinc     36292 Oct 11 01:02 runpilot2-wrapper.sh
[2025-10-11 22:49:25] -rw-r--r-- 1 boinc boinc      5112 Oct 11 01:02 queuedata.json
[2025-10-11 22:49:25] -rw-r--r-- 1 boinc boinc       100 Oct 11 21:58 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-11 22:49:25] -rwxr-xr-x 1 boinc boinc      7986 Oct 11 21:58 run_atlas
[2025-10-11 22:49:25] -rw-r--r-- 1 boinc boinc       105 Oct 11 21:58 job.xml
[2025-10-11 22:49:25] -rw-r--r-- 1 boinc boinc      6549 Oct 11 21:58 init_data.xml
[2025-10-11 22:49:25] -rw-r--r-- 2 boinc boinc 221439667 Oct 11 21:58 EVNT.46676267._001880.pool.root.1
[2025-10-11 22:49:25] -rw-r--r-- 2 boinc boinc     15120 Oct 11 21:58 start_atlas.sh
[2025-10-11 22:49:25] drwxrwx--x 2 boinc boinc        68 Oct 11 21:58 shared
[2025-10-11 22:49:25] -rw-r--r-- 2 boinc boinc    569677 Oct 11 21:58 input.tar.gz
[2025-10-11 22:49:25] -rw-r--r-- 1 boinc boinc         0 Oct 11 21:58 boinc_lockfile
[2025-10-11 22:49:25] -rw-r--r-- 1 boinc boinc      2550 Oct 11 21:58 pandaJob.out
[2025-10-11 22:49:25] -rw------- 1 boinc boinc    975512 Oct 11 21:58 agis_schedconf.cvmfs.json
[2025-10-11 22:49:25] -rw------- 1 boinc boinc   1560580 Oct 11 21:58 agis_ddmendpoints.agis.ALL.json
[2025-10-11 22:49:25] drwx------ 5 boinc boinc      4096 Oct 11 21:58 pilot3
[2025-10-11 22:49:25] -rw------- 1 boinc boinc 193415875 Oct 11 22:48 HITS.46676269._046544.pool.root.1
[2025-10-11 22:49:25] -rw-r--r-- 1 boinc boinc       529 Oct 11 22:48 boinc_task_state.xml
[2025-10-11 22:49:25] -rw------- 1 boinc boinc      1010 Oct 11 22:48 memory_monitor_summary.json
[2025-10-11 22:49:25] -rw------- 1 boinc boinc    263876 Oct 11 22:48 log.46676269._046544.job.log.tgz.1
[2025-10-11 22:49:25] -rw------- 1 boinc boinc      7783 Oct 11 22:48 heartbeat.json
[2025-10-11 22:49:25] -rw------- 1 boinc boinc        95 Oct 11 22:48 pilot_heartbeat.json
[2025-10-11 22:49:25] -rw-r--r-- 1 boinc boinc        27 Oct 11 22:49 wrapper_checkpoint.txt
[2025-10-11 22:49:25] -rw-r--r-- 1 boinc boinc      8192 Oct 11 22:49 boinc_mmap_file
[2025-10-11 22:49:25] -rw------- 1 boinc boinc      4934 Oct 11 22:49 pilotlog.txt
[2025-10-11 22:49:25] -rw------- 1 boinc boinc    461873 Oct 11 22:49 log.46676269._046544.job.log.1
[2025-10-11 22:49:25] -rw------- 1 boinc boinc       357 Oct 11 22:49 output.list
[2025-10-11 22:49:25] -rw-r--r-- 1 boinc boinc       620 Oct 11 22:49 runtime_log
[2025-10-11 22:49:25] -rw------- 1 boinc boinc    747520 Oct 11 22:49 result.tar.gz
[2025-10-11 22:49:25] -rw-r--r-- 1 boinc boinc      8716 Oct 11 22:49 runtime_log.err
[2025-10-11 22:49:25] -rw------- 1 boinc boinc       656 Oct 11 22:49 6HxKDmBJbR8n9Rq4apOajLDm4fhM0noT9bVof3QYDmmkQMDm0V12Hn.diag
[2025-10-11 22:49:25] -rw-r--r-- 1 boinc boinc     22276 Oct 11 22:49 stderr.txt
[2025-10-11 22:49:25] HITS file was successfully produced:
[2025-10-11 22:49:25] -rw------- 1 boinc boinc 193415875 Oct 11 22:48 shared/HITS.pool.root.1
[2025-10-11 22:49:25]  *** Contents of shared directory: ***
[2025-10-11 22:49:25] total 406444
[2025-10-11 22:49:25] -rw-r--r-- 2 boinc boinc 221439667 Oct 11 21:58 ATLAS.root_0
[2025-10-11 22:49:25] -rw-r--r-- 2 boinc boinc     15120 Oct 11 21:58 start_atlas.sh
[2025-10-11 22:49:25] -rw-r--r-- 2 boinc boinc    569677 Oct 11 21:58 input.tar.gz
[2025-10-11 22:49:25] -rw------- 1 boinc boinc 193415875 Oct 11 22:48 HITS.pool.root.1
[2025-10-11 22:49:25] -rw------- 1 boinc boinc    747520 Oct 11 22:49 result.tar.gz
22:49:27 (62944): run_atlas exited; CPU time 16750.552162
22:49:27 (62944): called boinc_finish(0)

</stderr_txt>
]]>

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