Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
04:28:02 (631900): wrapper (7.7.26015): starting
04:28:02 (631900): wrapper: running run_atlas (--nthreads 11)
[2025-10-11 04:28:02] Arguments: --nthreads 11
[2025-10-11 04:28:02] Threads: 11
[2025-10-11 04:28:02] Checking for CVMFS
[2025-10-11 04:28:02] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 04:28:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 04:28:02] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 04:28:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 04:28:02] 2.13.2.0 4120630 127582 270660 151577 0 107 16709582 32935936 19845 16776704 0 90756989 99.673 80826218 29894 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-11 04:28:02] CVMFS is ok
[2025-10-11 04:28:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 04:28:02] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 04:28:02] Further information can be found at the LHC@home message board.
[2025-10-11 04:28:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 04:28:02] Checking for apptainer binary...
[2025-10-11 04:28:02] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 04:28:02] Running /usr/bin/apptainer --version
[2025-10-11 04:28:02] apptainer version 1.4.3-1.el9
[2025-10-11 04:28:02] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 04:28:02] c-5-4.aglt2.org
[2025-10-11 04:28:02] apptainer works
[2025-10-11 04:28:02] Set ATHENA_PROC_NUMBER=11
[2025-10-11 04:28:02] Set ATHENA_CORE_NUMBER=11
[2025-10-11 04:28:02] Starting ATLAS job with PandaID=6837932869
[2025-10-11 04:28:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-11 05:56:28]  *** The last 200 lines of the pilot log: ***
[2025-10-11 05:56:28]  status_code=0
[2025-10-11 05:56:28]  storage_token=
[2025-10-11 05:56:28]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6837932869/log.46676269._049215.job.log.tgz.1
[2025-10-11 05:56:28]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/81/9f/log.46676269._049215.job.log.tgz.1
[2025-10-11 05:56:28]  workdir=None
[2025-10-11 05:56:28] ]
[2025-10-11 05:56:28] 2025-10-11 09:55:16,459 | INFO     | transferring file log.46676269._049215.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6837932869/log.46676269._049215.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-11 05:56:28] 2025-10-11 09:55:16,460 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6837932869/log.46676269._049215.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._049215.job
[2025-10-11 05:56:28] 2025-10-11 09:55:16,478 | INFO     | adding to output.list: log.46676269._049215.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/81/9f/log.46676269._049215.job.log.tg
[2025-10-11 05:56:28] 2025-10-11 09:55:16,479 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-11 05:56:28] 2025-10-11 09:55:16,480 | INFO     | summary of transferred files:
[2025-10-11 05:56:28] 2025-10-11 09:55:16,480 | INFO     |  -- lfn=log.46676269._049215.job.log.tgz.1, status_code=0, status=transferred
[2025-10-11 05:56:28] 2025-10-11 09:55:16,480 | INFO     | stage-out finished correctly
[2025-10-11 05:56:28] 2025-10-11 09:55:16,537 | INFO     | monitor loop #373: job 0:6837932869 is in state 'finished'
[2025-10-11 05:56:28] 2025-10-11 09:55:16,543 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 05:56:28] 2025-10-11 09:55:16,587 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-11 05:56:28] 2025-10-11 09:55:17,151 | INFO     | PID=635593 has CPU usage=13.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-11 05:56:28] 2025-10-11 09:55:17,151 | INFO     | .. there are 28 such processes running
[2025-10-11 05:56:28] 2025-10-11 09:55:17,486 | INFO     | job 6837932869 has state=finished
[2025-10-11 05:56:28] 2025-10-11 09:55:17,486 | INFO     | preparing for final server update for job 6837932869 in state='finished'
[2025-10-11 05:56:28] 2025-10-11 09:55:17,487 | INFO     | this job has now completed (state=finished)
[2025-10-11 05:56:28] 2025-10-11 09:55:17,487 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-11 05:56:28] 2025-10-11 09:55:17,487 | INFO     | log transfer has been attempted: DONE
[2025-10-11 05:56:28] 2025-10-11 09:55:17,487 | INFO     | job 6837932869 has finished - writing final server update
[2025-10-11 05:56:28] 2025-10-11 09:55:17,487 | INFO     | total number of processed events: 400 (read)
[2025-10-11 05:56:28] 2025-10-11 09:55:17,488 | INFO     | executing command: lscpu
[2025-10-11 05:56:28] 2025-10-11 09:55:17,542 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-11 05:56:28] 2025-10-11 09:55:18,151 | INFO     | time since job start (5225s) is within the limit (172800.0s)
[2025-10-11 05:56:28] 2025-10-11 09:55:19,057 | INFO     | monitor loop #374: job 0:6837932869 is in state 'finished'
[2025-10-11 05:56:28] 2025-10-11 09:55:19,057 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 05:56:28] 2025-10-11 09:55:20,158 | INFO     | time since job start (5227s) is within the limit (172800.0s)
[2025-10-11 05:56:28] 2025-10-11 09:55:20,158 | INFO     | 5229s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-10-11 05:56:28] 2025-10-11 09:55:21,559 | INFO     | monitor loop #375: job 0:6837932869 is in state 'finished'
[2025-10-11 05:56:28] 2025-10-11 09:55:21,560 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 05:56:28] 2025-10-11 09:55:21,640 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-11 05:56:28] 2025-10-11 09:55:21,647 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2799.97865
[2025-10-11 05:56:28] 2025-10-11 09:55:21,654 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6837932869/memory_monitor_summary.json (trf name=prmon)
[2025-10-11 05:56:28] 2025-10-11 09:55:21,655 | INFO     | extracted standard info from prmon json
[2025-10-11 05:56:28] 2025-10-11 09:55:21,655 | INFO     | extracted standard memory fields from prmon json
[2025-10-11 05:56:28] 2025-10-11 09:55:21,655 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-11 05:56:28] 2025-10-11 09:55:21,655 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-11 05:56:28] 2025-10-11 09:55:21,655 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-11 05:56:28] 2025-10-11 09:55:21,658 | INFO     | fitting pss+swap vs Time
[2025-10-11 05:56:28] 2025-10-11 09:55:21,658 | INFO     | sum of square deviations: 152858680.0
[2025-10-11 05:56:28] 2025-10-11 09:55:21,658 | INFO     | sum of deviations: -18447240824.0
[2025-10-11 05:56:28] 2025-10-11 09:55:21,659 | INFO     | mean x: 1760174003.0
[2025-10-11 05:56:28] 2025-10-11 09:55:21,659 | INFO     | mean y: 2535835.9620253164
[2025-10-11 05:56:28] 2025-10-11 09:55:21,659 | INFO     | -- intersect: 212423274556.7537
[2025-10-11 05:56:28] 2025-10-11 09:55:21,659 | INFO     | intersect: 212423274556.7537
[2025-10-11 05:56:28] 2025-10-11 09:55:21,659 | INFO     | chi2: 0.15509096232224692
[2025-10-11 05:56:28] 2025-10-11 09:55:21,659 | INFO     | -- intersect: 212423274556.7537
[2025-10-11 05:56:28] 2025-10-11 09:55:21,660 | INFO     | current memory leak: -120.68 B/s (using 79 data points, chi2=0.16)
[2025-10-11 05:56:28] 2025-10-11 09:55:21,660 | INFO     | could have reported an average CPU frequency of 2719 MHz (6 samples)
[2025-10-11 05:56:28] 2025-10-11 09:55:21,660 | INFO     | ..............................
[2025-10-11 05:56:28] 2025-10-11 09:55:21,660 | INFO     | . Timing measurements:
[2025-10-11 05:56:28] 2025-10-11 09:55:21,660 | INFO     | . get job = 0 s
[2025-10-11 05:56:28] 2025-10-11 09:55:21,661 | INFO     | . initial setup = 2 s
[2025-10-11 05:56:28] 2025-10-11 09:55:21,661 | INFO     | . payload setup = 5 s
[2025-10-11 05:56:28] 2025-10-11 09:55:21,661 | INFO     | . stage-in = 0 s
[2025-10-11 05:56:28] 2025-10-11 09:55:21,661 | INFO     | . payload execution = 5196 s
[2025-10-11 05:56:28] 2025-10-11 09:55:21,661 | INFO     | . stage-out = 0 s
[2025-10-11 05:56:28] 2025-10-11 09:55:21,661 | INFO     | . log creation = 0 s
[2025-10-11 05:56:28] 2025-10-11 09:55:21,661 | INFO     | ..............................
[2025-10-11 05:56:28] 2025-10-11 09:55:21,770 | INFO     | 
[2025-10-11 05:56:28] 2025-10-11 09:55:21,770 | INFO     | job summary report
[2025-10-11 05:56:28] 2025-10-11 09:55:21,770 | INFO     | --------------------------------------------------
[2025-10-11 05:56:28] 2025-10-11 09:55:21,770 | INFO     | PanDA job id: 6837932869
[2025-10-11 05:56:28] 2025-10-11 09:55:21,770 | INFO     | task id: 46676269
[2025-10-11 05:56:28] 2025-10-11 09:55:21,770 | INFO     | errors: (none)
[2025-10-11 05:56:28] 2025-10-11 09:55:21,771 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-11 05:56:28] 2025-10-11 09:55:21,771 | INFO     | pilot state: finished 
[2025-10-11 05:56:28] 2025-10-11 09:55:21,771 | INFO     | transexitcode: 0
[2025-10-11 05:56:28] 2025-10-11 09:55:21,771 | INFO     | exeerrorcode: 0
[2025-10-11 05:56:28] 2025-10-11 09:55:21,771 | INFO     | exeerrordiag: 
[2025-10-11 05:56:28] 2025-10-11 09:55:21,771 | INFO     | exitcode: 0
[2025-10-11 05:56:28] 2025-10-11 09:55:21,771 | INFO     | exitmsg: OK
[2025-10-11 05:56:28] 2025-10-11 09:55:21,771 | INFO     | cpuconsumptiontime: 46601 s
[2025-10-11 05:56:28] 2025-10-11 09:55:21,771 | INFO     | nevents: 400
[2025-10-11 05:56:28] 2025-10-11 09:55:21,771 | INFO     | neventsw: 0
[2025-10-11 05:56:28] 2025-10-11 09:55:21,771 | INFO     | pid: 642556
[2025-10-11 05:56:28] 2025-10-11 09:55:21,772 | INFO     | pgrp: 642556
[2025-10-11 05:56:28] 2025-10-11 09:55:21,772 | INFO     | corecount: 11
[2025-10-11 05:56:28] 2025-10-11 09:55:21,772 | INFO     | event service: False
[2025-10-11 05:56:28] 2025-10-11 09:55:21,772 | INFO     | sizes: {0: 2348851, 5: 2349113, 11: 2349169, 5205: 2375580, 5207: 2384634, 5213: 2384772}
[2025-10-11 05:56:28] 2025-10-11 09:55:21,772 | INFO     | --------------------------------------------------
[2025-10-11 05:56:28] 2025-10-11 09:55:21,772 | INFO     | 
[2025-10-11 05:56:28] 2025-10-11 09:55:21,772 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-11 05:56:28] 2025-10-11 09:55:21,792 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-11 05:56:28] 2025-10-11 09:55:21,792 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-11 05:56:28] 2025-10-11 09:55:21,793 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-11 05:56:28] 2025-10-11 09:55:21,793 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-11 05:56:28] 2025-10-11 09:55:21,793 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-11 05:56:28] 2025-10-11 09:55:21,793 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-11 05:56:28] 2025-10-11 09:55:21,793 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-11 05:56:28] 2025-10-11 09:55:21,793 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-11 05:56:28] 2025-10-11 09:55:21,793 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-11 05:56:28] 2025-10-11 09:55:21,793 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-11 05:56:28] 2025-10-11 09:55:21,793 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-11 05:56:28] 2025-10-11 09:55:21,794 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-11 05:56:28] 2025-10-11 09:55:21,794 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-11 05:56:28] 2025-10-11 09:55:21,794 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-11 05:56:28] 2025-10-11 09:55:21,794 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-11 05:56:28] 2025-10-11 09:55:21,794 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-11 05:56:28] 2025-10-11 09:55:21,794 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-11 05:56:28] 2025-10-11 09:55:21,794 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-11 05:56:28] 2025-10-11 09:55:21,794 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-11 05:56:28] 2025-10-11 09:55:21,795 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-11 05:56:28] 2025-10-11 09:55:21,795 | INFO     | job 6837932869 has completed (purged errors)
[2025-10-11 05:56:28] 2025-10-11 09:55:21,795 | INFO     | overall cleanup function is called
[2025-10-11 05:56:28] 2025-10-11 09:55:22,803 | INFO     | --- collectZombieJob: --- 10, [642556]
[2025-10-11 05:56:28] 2025-10-11 09:55:22,803 | INFO     | zombie collector waiting for pid 642556
[2025-10-11 05:56:28] 2025-10-11 09:55:22,804 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-11 05:56:28] 2025-10-11 09:55:22,804 | INFO     | collected zombie processes
[2025-10-11 05:56:28] 2025-10-11 09:55:22,804 | INFO     | will attempt to kill all subprocesses of pid=642556
[2025-10-11 05:56:28] 2025-10-11 09:55:23,182 | INFO     | process IDs to be killed: [642556] (in reverse order)
[2025-10-11 05:56:28] 2025-10-11 09:55:23,307 | WARNING  | found no corresponding commands to process id(s)
[2025-10-11 05:56:28] 2025-10-11 09:55:23,307 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-11 05:56:28] 2025-10-11 09:55:23,321 | INFO     | did not find any defunct processes belonging to 642556
[2025-10-11 05:56:28] 2025-10-11 09:55:23,335 | INFO     | did not find any defunct processes belonging to 642556
[2025-10-11 05:56:28] 2025-10-11 09:55:23,335 | INFO     | ready for new job
[2025-10-11 05:56:28] 2025-10-11 09:55:23,335 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-11 05:56:28] 2025-10-11 09:55:23,337 | INFO     | ***************************************
[2025-10-11 05:56:28] 2025-10-11 09:55:23,337 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-11 05:56:28] 2025-10-11 09:55:23,338 | INFO     | ***************************************
[2025-10-11 05:56:28] 2025-10-11 09:55:23,338 | INFO     | 
[2025-10-11 05:56:28] 2025-10-11 09:55:23,351 | INFO     | architecture information:
[2025-10-11 05:56:28] 2025-10-11 09:55:23,352 | INFO     | executing command: cat /etc/os-release
[2025-10-11 05:56:28] 2025-10-11 09:55:23,368 | INFO     | cat /etc/os-release:
[2025-10-11 05:56:28] NAME="CentOS Linux"
[2025-10-11 05:56:28] VERSION="7 (Core)"
[2025-10-11 05:56:28] ID="centos"
[2025-10-11 05:56:28] ID_LIKE="rhel fedora"
[2025-10-11 05:56:28] VERSION_ID="7"
[2025-10-11 05:56:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-11 05:56:28] ANSI_COLOR="0;31"
[2025-10-11 05:56:28] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-11 05:56:28] HOME_URL="https://www.centos.org/"
[2025-10-11 05:56:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-11 05:56:28] 
[2025-10-11 05:56:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-11 05:56:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-11 05:56:28] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-11 05:56:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-11 05:56:28] 
[2025-10-11 05:56:28] 2025-10-11 09:55:23,369 | INFO     | ***************************************
[2025-10-11 05:56:28] 2025-10-11 09:55:23,872 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-11 05:56:28] 2025-10-11 09:55:23,889 | INFO     | sufficient remaining disk space (75880202240 B)
[2025-10-11 05:56:28] 2025-10-11 09:55:23,889 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-11 05:56:28] 2025-10-11 09:55:23,890 | INFO     | current server update state: UPDATING_FINAL
[2025-10-11 05:56:28] 2025-10-11 09:55:23,890 | INFO     | update_server=False
[2025-10-11 05:56:28] 2025-10-11 09:55:23,890 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-11 05:56:28] 2025-10-11 09:55:23,932 | INFO     | all data control threads have been joined
[2025-10-11 05:56:28] 2025-10-11 09:55:24,062 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-11 05:56:28] 2025-10-11 09:55:24,064 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-11 05:56:28] 2025-10-11 09:55:24,064 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-11 05:56:28] 2025-10-11 09:55:24,064 | INFO     | will abort loop
[2025-10-11 05:56:28] 2025-10-11 09:55:24,598 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-11 05:56:28] 2025-10-11 09:55:24,635 | INFO     | all payload control threads have been joined
[2025-10-11 05:56:28] 2025-10-11 09:55:24,744 | INFO     | all job control threads have been joined
[2025-10-11 05:56:28] 2025-10-11 09:55:24,895 | INFO     | [job] retrieve thread has finished
[2025-10-11 05:56:28] 2025-10-11 09:55:24,936 | INFO     | [data] control thread has finished
[2025-10-11 05:56:28] 2025-10-11 09:55:25,070 | INFO     | [job] job monitor thread has finished
[2025-10-11 05:56:28] 2025-10-11 09:55:25,142 | INFO     | [data] copytool_in thread has finished
[2025-10-11 05:56:28] 2025-10-11 09:55:25,147 | INFO     | [payload] failed_post thread has finished
[2025-10-11 05:56:28] 2025-10-11 09:55:25,420 | INFO     | [payload] validate_post thread has finished
[2025-10-11 05:56:28] 2025-10-11 09:55:25,476 | INFO     | [payload] validate_pre thread has finished
[2025-10-11 05:56:28] 2025-10-11 09:55:25,585 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-11 05:56:28] 2025-10-11 09:55:25,640 | INFO     | [payload] control thread has finished
[2025-10-11 05:56:28] 2025-10-11 09:55:25,750 | INFO     | [job] control thread has finished
[2025-10-11 05:56:28] 2025-10-11 09:55:26,101 | INFO     | [job] validate thread has finished
[2025-10-11 05:56:28] 2025-10-11 09:55:26,117 | INFO     | [payload] execute_payloads thread has finished
[2025-10-11 05:56:28] 2025-10-11 09:55:26,313 | INFO     | [job] create_data_payload thread has finished
[2025-10-11 05:56:28] 2025-10-11 09:55:26,603 | INFO     | [data] copytool_out thread has finished
[2025-10-11 05:56:28] 2025-10-11 09:55:26,781 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-11 05:56:28] 2025-10-11 09:55:27,195 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-11 05:56:28] 2025-10-11 09:55:27,786 | INFO     | [job] queue monitor thread has finished
[2025-10-11 05:56:28] 2025-10-11 09:55:31,202 | INFO     | [data] queue_monitor thread has finished
[2025-10-11 05:56:28] 2025-10-11 09:55:53,720 | INFO     | PID=635593 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-11 05:56:28] 2025-10-11 09:55:53,720 | INFO     | .. there are 27 such processes running
[2025-10-11 05:56:28] 2025-10-11 09:55:53,722 | INFO     | found 0 job(s) in 20 queues
[2025-10-11 05:56:28] 2025-10-11 09:55:53,722 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-11 05:56:28] 2025-10-11 09:55:53,722 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-11 05:56:28] 2025-10-11 09:56:22,206 | INFO     | [monitor] cgroup control has ended
[2025-10-11 05:56:28] 2025-10-11 09:56:23,349 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140620342802240)>', '<ExcThread(monitor, started 140619703904000)>']
[2025-10-11 05:56:28] 2025-10-11 09:56:23,863 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-11 05:56:28] 2025-10-11 09:56:23,863 | INFO     | [monitor] control thread has ended
[2025-10-11 05:56:28] 2025-10-11 09:56:28,374 | INFO     | all workflow threads have been joined
[2025-10-11 05:56:28] 2025-10-11 09:56:28,374 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-11 05:56:28] 2025-10-11 09:56:28,374 | INFO     | traces error code: 0
[2025-10-11 05:56:28] 2025-10-11 09:56:28,375 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-11 05:56:28] 2025-10-11 09:56:28,548 [wrapper] ==== pilot stdout END ====
[2025-10-11 05:56:28] 2025-10-11 09:56:28,551 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-11 05:56:28] 2025-10-11 09:56:28,553 [wrapper] pilotpid: 635593
[2025-10-11 05:56:28] 2025-10-11 09:56:28,555 [wrapper] Pilot exit status: 0
[2025-10-11 05:56:28] 2025-10-11 09:56:28,564 [wrapper] pandaids: 6837932869
[2025-10-11 05:56:28] 2025-10-11 09:56:28,638 [wrapper] cleanup supervisor_pilot  881381 635594
[2025-10-11 05:56:28] 2025-10-11 09:56:28,640 [wrapper] Test setup, not cleaning
[2025-10-11 05:56:28] 2025-10-11 09:56:28,642 [wrapper] apfmon messages muted
[2025-10-11 05:56:28] 2025-10-11 09:56:28,645 [wrapper] ==== wrapper stdout END ====
[2025-10-11 05:56:28] 2025-10-11 09:56:28,647 [wrapper] ==== wrapper stderr END ====
[2025-10-11 05:56:28]  *** Error codes and diagnostics ***
[2025-10-11 05:56:28]     "exeErrorCode": 0,
[2025-10-11 05:56:28]     "exeErrorDiag": "",
[2025-10-11 05:56:28]     "pilotErrorCode": 0,
[2025-10-11 05:56:28]     "pilotErrorDiag": "",
[2025-10-11 05:56:28]  *** Listing of results directory ***
[2025-10-11 05:56:28] total 405568
[2025-10-11 05:56:28] -rw-r--r--. 1 boincer umatlas    557409 Oct 10 22:04 pilot3.tar.gz
[2025-10-11 05:56:28] -rw-r--r--. 1 boincer umatlas      5112 Oct 10 22:07 queuedata.json
[2025-10-11 05:56:28] -rwx------. 1 boincer umatlas     36292 Oct 10 22:07 runpilot2-wrapper.sh
[2025-10-11 05:56:28] -rw-r--r--. 1 boincer umatlas       100 Oct 11 04:28 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-11 05:56:28] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 11 04:28 run_atlas
[2025-10-11 05:56:28] -rw-r--r--. 1 boincer umatlas       105 Oct 11 04:28 job.xml
[2025-10-11 05:56:28] -rw-r--r--. 2 boincer umatlas 218220198 Oct 11 04:28 EVNT.46676267._001985.pool.root.1
[2025-10-11 05:56:28] -rw-r--r--. 2 boincer umatlas     15120 Oct 11 04:28 start_atlas.sh
[2025-10-11 05:56:28] drwxrwx--x. 2 boincer umatlas      4096 Oct 11 04:28 shared
[2025-10-11 05:56:28] -rw-r--r--. 2 boincer umatlas    569678 Oct 11 04:28 input.tar.gz
[2025-10-11 05:56:28] -rw-r--r--. 1 boincer umatlas         0 Oct 11 04:28 boinc_lockfile
[2025-10-11 05:56:28] -rw-r--r--. 1 boincer umatlas      2547 Oct 11 04:28 pandaJob.out
[2025-10-11 05:56:28] -rw-------. 1 boincer umatlas    975509 Oct 11 04:28 agis_schedconf.cvmfs.json
[2025-10-11 05:56:28] -rw-------. 1 boincer umatlas   1560580 Oct 11 04:28 agis_ddmendpoints.agis.ALL.json
[2025-10-11 05:56:28] drwx------. 5 boincer umatlas      4096 Oct 11 04:28 pilot3
[2025-10-11 05:56:28] -rw-------. 1 boincer umatlas 190939163 Oct 11 05:54 HITS.46676269._049215.pool.root.1
[2025-10-11 05:56:28] -rw-r--r--. 1 boincer umatlas       529 Oct 11 05:54 boinc_task_state.xml
[2025-10-11 05:56:28] -rw-r--r--. 1 boincer umatlas      6654 Oct 11 05:54 init_data.xml
[2025-10-11 05:56:28] -rw-------. 1 boincer umatlas      1038 Oct 11 05:55 memory_monitor_summary.json
[2025-10-11 05:56:28] -rw-------. 1 boincer umatlas    365693 Oct 11 05:55 log.46676269._049215.job.log.tgz.1
[2025-10-11 05:56:28] -rw-------. 1 boincer umatlas      7816 Oct 11 05:55 heartbeat.json
[2025-10-11 05:56:28] -rw-------. 1 boincer umatlas        95 Oct 11 05:55 pilot_heartbeat.json
[2025-10-11 05:56:28] -rw-r--r--. 1 boincer umatlas        27 Oct 11 05:56 wrapper_checkpoint.txt
[2025-10-11 05:56:28] -rw-------. 1 boincer umatlas      5009 Oct 11 05:56 pilotlog.txt
[2025-10-11 05:56:28] -rw-------. 1 boincer umatlas    752109 Oct 11 05:56 log.46676269._049215.job.log.1
[2025-10-11 05:56:28] -rw-------. 1 boincer umatlas       357 Oct 11 05:56 output.list
[2025-10-11 05:56:28] -rw-r--r--. 1 boincer umatlas       620 Oct 11 05:56 runtime_log
[2025-10-11 05:56:28] -rw-------. 1 boincer umatlas   1136640 Oct 11 05:56 result.tar.gz
[2025-10-11 05:56:28] -rw-r--r--. 1 boincer umatlas      8690 Oct 11 05:56 runtime_log.err
[2025-10-11 05:56:28] -rw-------. 1 boincer umatlas       649 Oct 11 05:56 oBOODmkCeR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmL7eNDmbOvedn.diag
[2025-10-11 05:56:28] -rw-r--r--. 1 boincer umatlas     22156 Oct 11 05:56 stderr.txt
[2025-10-11 05:56:28] -rw-r--r--. 1 boincer umatlas      8192 Oct 11 05:56 boinc_mmap_file
[2025-10-11 05:56:28] HITS file was successfully produced:
[2025-10-11 05:56:28] -rw-------. 1 boincer umatlas 190939163 Oct 11 05:54 shared/HITS.pool.root.1
[2025-10-11 05:56:28]  *** Contents of shared directory: ***
[2025-10-11 05:56:28] total 401268
[2025-10-11 05:56:28] -rw-r--r--. 2 boincer umatlas 218220198 Oct 11 04:28 ATLAS.root_0
[2025-10-11 05:56:28] -rw-r--r--. 2 boincer umatlas     15120 Oct 11 04:28 start_atlas.sh
[2025-10-11 05:56:28] -rw-r--r--. 2 boincer umatlas    569678 Oct 11 04:28 input.tar.gz
[2025-10-11 05:56:28] -rw-------. 1 boincer umatlas 190939163 Oct 11 05:54 HITS.pool.root.1
[2025-10-11 05:56:28] -rw-------. 1 boincer umatlas   1136640 Oct 11 05:56 result.tar.gz
05:56:50 (631900): run_atlas exited; CPU time 46721.532309
05:56:50 (631900): called boinc_finish(0)

</stderr_txt>
]]>

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