Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
02:04:10 (16579): wrapper (7.7.26015): starting
02:04:10 (16579): wrapper: running run_atlas (--nthreads 12)
[2025-10-11 02:04:10] Arguments: --nthreads 12
[2025-10-11 02:04:10] Threads: 12
[2025-10-11 02:04:10] Checking for CVMFS
[2025-10-11 02:04:10] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 02:04:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 02:04:10] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 02:04:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 02:04:10] 2.11.2.0 3103 11033 88156 151573 2 57 18988308 20275201 1 130560 0 11202292 99.993 367234 45858 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-11 02:04:10] CVMFS is ok
[2025-10-11 02:04:10] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 02:04:10] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 02:04:10] Further information can be found at the LHC@home message board.
[2025-10-11 02:04:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 02:04:10] Checking for apptainer binary...
[2025-10-11 02:04:10] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 02:04:10] Running /usr/bin/apptainer --version
[2025-10-11 02:04:10] apptainer version 1.3.2-1.el7
[2025-10-11 02:04:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 02:04:11] c-115-41.aglt2.org
[2025-10-11 02:04:11] apptainer works
[2025-10-11 02:04:11] Set ATHENA_PROC_NUMBER=12
[2025-10-11 02:04:11] Set ATHENA_CORE_NUMBER=12
[2025-10-11 02:04:11] Starting ATLAS job with PandaID=6837707174
[2025-10-11 02:04:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-11 03:09:39]  *** The last 200 lines of the pilot log: ***
[2025-10-11 03:09:39]  mtime=0
[2025-10-11 03:09:39]  protocol_id=None
[2025-10-11 03:09:39]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-11 03:09:39]  replicas=None
[2025-10-11 03:09:39]  scope=mc23_13p6TeV
[2025-10-11 03:09:39]  status=None
[2025-10-11 03:09:39]  status_code=0
[2025-10-11 03:09:39]  storage_token=
[2025-10-11 03:09:39]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6837707174/log.46676269._043439.job.log.tgz.1
[2025-10-11 03:09:39]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/bd/6f/log.46676269._043439.job.log.tgz.1
[2025-10-11 03:09:39]  workdir=None
[2025-10-11 03:09:39] ]
[2025-10-11 03:09:39] 2025-10-11 07:08:38,686 | INFO     | transferring file log.46676269._043439.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6837707174/log.46676269._043439.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-11 03:09:39] 2025-10-11 07:08:38,686 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6837707174/log.46676269._043439.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._043439.job
[2025-10-11 03:09:39] 2025-10-11 07:08:38,711 | INFO     | adding to output.list: log.46676269._043439.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/bd/6f/log.46676269._043439.job.log.tg
[2025-10-11 03:09:39] 2025-10-11 07:08:38,711 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-11 03:09:39] 2025-10-11 07:08:38,712 | INFO     | summary of transferred files:
[2025-10-11 03:09:39] 2025-10-11 07:08:38,712 | INFO     |  -- lfn=log.46676269._043439.job.log.tgz.1, status_code=0, status=transferred
[2025-10-11 03:09:39] 2025-10-11 07:08:38,712 | INFO     | stage-out finished correctly
[2025-10-11 03:09:39] 2025-10-11 07:08:39,402 | INFO     | time since job start (3853s) is within the limit (172800.0s)
[2025-10-11 03:09:39] 2025-10-11 07:08:39,794 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-11 03:09:39] 2025-10-11 07:08:39,868 | INFO     | job 6837707174 has state=finished
[2025-10-11 03:09:39] 2025-10-11 07:08:39,868 | INFO     | preparing for final server update for job 6837707174 in state='finished'
[2025-10-11 03:09:39] 2025-10-11 07:08:39,869 | INFO     | this job has now completed (state=finished)
[2025-10-11 03:09:39] 2025-10-11 07:08:39,869 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-11 03:09:39] 2025-10-11 07:08:39,869 | INFO     | log transfer has been attempted: DONE
[2025-10-11 03:09:39] 2025-10-11 07:08:39,869 | INFO     | job 6837707174 has finished - writing final server update
[2025-10-11 03:09:39] 2025-10-11 07:08:39,869 | INFO     | total number of processed events: 400 (read)
[2025-10-11 03:09:39] 2025-10-11 07:08:39,870 | INFO     | executing command: lscpu
[2025-10-11 03:09:39] 2025-10-11 07:08:39,897 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-11 03:09:39] 2025-10-11 07:08:41,407 | INFO     | time since job start (3855s) is within the limit (172800.0s)
[2025-10-11 03:09:39] 2025-10-11 07:08:42,045 | WARNING  | process 26792 can no longer be monitored (due to stat problems) - aborting
[2025-10-11 03:09:39] 2025-10-11 07:08:42,045 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6837707174/memory_monitor_summary.json (trf name=prmon)
[2025-10-11 03:09:39] 2025-10-11 07:08:42,131 | INFO     | number of running child processes to parent process 26792: 1
[2025-10-11 03:09:39] 2025-10-11 07:08:42,131 | INFO     | maximum number of monitored processes: 6
[2025-10-11 03:09:39] 2025-10-11 07:08:42,529 | INFO     | PID=20316 has CPU usage=6.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-11 03:09:39] 2025-10-11 07:08:43,530 | INFO     | time since job start (3857s) is within the limit (172800.0s)
[2025-10-11 03:09:39] 2025-10-11 07:08:44,391 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-11 03:09:39] 2025-10-11 07:08:44,395 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1729.0833333333333
[2025-10-11 03:09:39] 2025-10-11 07:08:44,398 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6837707174/memory_monitor_summary.json (trf name=prmon)
[2025-10-11 03:09:39] 2025-10-11 07:08:44,399 | INFO     | extracted standard info from prmon json
[2025-10-11 03:09:39] 2025-10-11 07:08:44,399 | INFO     | extracted standard memory fields from prmon json
[2025-10-11 03:09:39] 2025-10-11 07:08:44,399 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-11 03:09:39] 2025-10-11 07:08:44,400 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-11 03:09:39] 2025-10-11 07:08:44,400 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-11 03:09:39] 2025-10-11 07:08:44,401 | INFO     | fitting pss+swap vs Time
[2025-10-11 03:09:39] 2025-10-11 07:08:44,402 | INFO     | sum of square deviations: 54438230.0
[2025-10-11 03:09:39] 2025-10-11 07:08:44,402 | INFO     | sum of deviations: 636633637.0
[2025-10-11 03:09:39] 2025-10-11 07:08:44,402 | INFO     | mean x: 1760164676.5
[2025-10-11 03:09:39] 2025-10-11 07:08:44,402 | INFO     | mean y: 2693714.3214285714
[2025-10-11 03:09:39] 2025-10-11 07:08:44,402 | INFO     | -- intersect: -20581738213.739483
[2025-10-11 03:09:39] 2025-10-11 07:08:44,402 | INFO     | intersect: -20581738213.739483
[2025-10-11 03:09:39] 2025-10-11 07:08:44,402 | INFO     | chi2: 0.0025999871657041785
[2025-10-11 03:09:39] 2025-10-11 07:08:44,403 | INFO     | -- intersect: -20581738213.739483
[2025-10-11 03:09:39] 2025-10-11 07:08:44,403 | INFO     | current memory leak: 11.69 B/s (using 56 data points, chi2=0.00)
[2025-10-11 03:09:39] 2025-10-11 07:08:44,403 | INFO     | could have reported an average CPU frequency of 2154 MHz (6 samples)
[2025-10-11 03:09:39] 2025-10-11 07:08:44,403 | INFO     | ..............................
[2025-10-11 03:09:39] 2025-10-11 07:08:44,403 | INFO     | . Timing measurements:
[2025-10-11 03:09:39] 2025-10-11 07:08:44,403 | INFO     | . get job = 0 s
[2025-10-11 03:09:39] 2025-10-11 07:08:44,403 | INFO     | . initial setup = 2 s
[2025-10-11 03:09:39] 2025-10-11 07:08:44,403 | INFO     | . payload setup = 6 s
[2025-10-11 03:09:39] 2025-10-11 07:08:44,404 | INFO     | . stage-in = 0 s
[2025-10-11 03:09:39] 2025-10-11 07:08:44,404 | INFO     | . payload execution = 3825 s
[2025-10-11 03:09:39] 2025-10-11 07:08:44,404 | INFO     | . stage-out = 0 s
[2025-10-11 03:09:39] 2025-10-11 07:08:44,404 | INFO     | . log creation = 0 s
[2025-10-11 03:09:39] 2025-10-11 07:08:44,404 | INFO     | ..............................
[2025-10-11 03:09:39] 2025-10-11 07:08:44,494 | INFO     | 
[2025-10-11 03:09:39] 2025-10-11 07:08:44,494 | INFO     | job summary report
[2025-10-11 03:09:39] 2025-10-11 07:08:44,494 | INFO     | --------------------------------------------------
[2025-10-11 03:09:39] 2025-10-11 07:08:44,495 | INFO     | PanDA job id: 6837707174
[2025-10-11 03:09:39] 2025-10-11 07:08:44,495 | INFO     | task id: 46676269
[2025-10-11 03:09:39] 2025-10-11 07:08:44,495 | INFO     | errors: (none)
[2025-10-11 03:09:39] 2025-10-11 07:08:44,495 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-11 03:09:39] 2025-10-11 07:08:44,495 | INFO     | pilot state: finished 
[2025-10-11 03:09:39] 2025-10-11 07:08:44,495 | INFO     | transexitcode: 0
[2025-10-11 03:09:39] 2025-10-11 07:08:44,496 | INFO     | exeerrorcode: 0
[2025-10-11 03:09:39] 2025-10-11 07:08:44,496 | INFO     | exeerrordiag: 
[2025-10-11 03:09:39] 2025-10-11 07:08:44,496 | INFO     | exitcode: 0
[2025-10-11 03:09:39] 2025-10-11 07:08:44,496 | INFO     | exitmsg: OK
[2025-10-11 03:09:39] 2025-10-11 07:08:44,496 | INFO     | cpuconsumptiontime: 41300 s
[2025-10-11 03:09:39] 2025-10-11 07:08:44,496 | INFO     | nevents: 400
[2025-10-11 03:09:39] 2025-10-11 07:08:44,497 | INFO     | neventsw: 0
[2025-10-11 03:09:39] 2025-10-11 07:08:44,497 | INFO     | pid: 26792
[2025-10-11 03:09:39] 2025-10-11 07:08:44,497 | INFO     | pgrp: 26792
[2025-10-11 03:09:39] 2025-10-11 07:08:44,497 | INFO     | corecount: 12
[2025-10-11 03:09:39] 2025-10-11 07:08:44,497 | INFO     | event service: False
[2025-10-11 03:09:39] 2025-10-11 07:08:44,497 | INFO     | sizes: {0: 2348855, 5: 2349117, 11: 2349173, 3835: 2374957, 3836: 2383955, 3837: 2384011, 3842: 2384333}
[2025-10-11 03:09:39] 2025-10-11 07:08:44,497 | INFO     | --------------------------------------------------
[2025-10-11 03:09:39] 2025-10-11 07:08:44,498 | INFO     | 
[2025-10-11 03:09:39] 2025-10-11 07:08:44,498 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-11 03:09:39] 2025-10-11 07:08:44,523 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-11 03:09:39] 2025-10-11 07:08:44,523 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-11 03:09:39] 2025-10-11 07:08:44,523 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-11 03:09:39] 2025-10-11 07:08:44,524 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-11 03:09:39] 2025-10-11 07:08:44,524 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-11 03:09:39] 2025-10-11 07:08:44,524 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-11 03:09:39] 2025-10-11 07:08:44,524 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-11 03:09:39] 2025-10-11 07:08:44,524 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-11 03:09:39] 2025-10-11 07:08:44,524 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-11 03:09:39] 2025-10-11 07:08:44,525 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-11 03:09:39] 2025-10-11 07:08:44,525 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-11 03:09:39] 2025-10-11 07:08:44,525 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-11 03:09:39] 2025-10-11 07:08:44,525 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-11 03:09:39] 2025-10-11 07:08:44,525 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-11 03:09:39] 2025-10-11 07:08:44,525 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-11 03:09:39] 2025-10-11 07:08:44,526 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-11 03:09:39] 2025-10-11 07:08:44,526 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-11 03:09:39] 2025-10-11 07:08:44,526 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-11 03:09:39] 2025-10-11 07:08:44,526 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-11 03:09:39] 2025-10-11 07:08:44,526 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-11 03:09:39] 2025-10-11 07:08:44,527 | INFO     | job 6837707174 has completed (purged errors)
[2025-10-11 03:09:39] 2025-10-11 07:08:44,527 | INFO     | overall cleanup function is called
[2025-10-11 03:09:39] 2025-10-11 07:08:45,535 | INFO     | --- collectZombieJob: --- 10, [26792]
[2025-10-11 03:09:39] 2025-10-11 07:08:45,535 | INFO     | zombie collector waiting for pid 26792
[2025-10-11 03:09:39] 2025-10-11 07:08:45,535 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-11 03:09:39] 2025-10-11 07:08:45,536 | INFO     | collected zombie processes
[2025-10-11 03:09:39] 2025-10-11 07:08:45,536 | INFO     | will attempt to kill all subprocesses of pid=26792
[2025-10-11 03:09:39] 2025-10-11 07:08:45,622 | INFO     | process IDs to be killed: [26792] (in reverse order)
[2025-10-11 03:09:39] 2025-10-11 07:08:45,669 | WARNING  | found no corresponding commands to process id(s)
[2025-10-11 03:09:39] 2025-10-11 07:08:45,670 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-11 03:09:39] 2025-10-11 07:08:45,673 | INFO     | did not find any defunct processes belonging to 26792
[2025-10-11 03:09:39] 2025-10-11 07:08:45,677 | INFO     | did not find any defunct processes belonging to 26792
[2025-10-11 03:09:39] 2025-10-11 07:08:45,677 | INFO     | ready for new job
[2025-10-11 03:09:39] 2025-10-11 07:08:45,678 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-11 03:09:39] 2025-10-11 07:08:45,679 | INFO     | ***************************************
[2025-10-11 03:09:39] 2025-10-11 07:08:45,680 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-11 03:09:39] 2025-10-11 07:08:45,680 | INFO     | ***************************************
[2025-10-11 03:09:39] 2025-10-11 07:08:45,680 | INFO     | 
[2025-10-11 03:09:39] 2025-10-11 07:08:45,680 | INFO     | architecture information:
[2025-10-11 03:09:39] 2025-10-11 07:08:45,681 | INFO     | executing command: cat /etc/os-release
[2025-10-11 03:09:39] 2025-10-11 07:08:45,695 | INFO     | cat /etc/os-release:
[2025-10-11 03:09:39] NAME="CentOS Linux"
[2025-10-11 03:09:39] VERSION="7 (Core)"
[2025-10-11 03:09:39] ID="centos"
[2025-10-11 03:09:39] ID_LIKE="rhel fedora"
[2025-10-11 03:09:39] VERSION_ID="7"
[2025-10-11 03:09:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-11 03:09:39] ANSI_COLOR="0;31"
[2025-10-11 03:09:39] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-11 03:09:39] HOME_URL="https://www.centos.org/"
[2025-10-11 03:09:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-11 03:09:39] 
[2025-10-11 03:09:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-11 03:09:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-11 03:09:39] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-11 03:09:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-11 03:09:39] 
[2025-10-11 03:09:39] 2025-10-11 07:08:45,696 | INFO     | ***************************************
[2025-10-11 03:09:39] 2025-10-11 07:08:46,199 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-11 03:09:39] 2025-10-11 07:08:46,217 | INFO     | sufficient remaining disk space (18594398208 B)
[2025-10-11 03:09:39] 2025-10-11 07:08:46,217 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-11 03:09:39] 2025-10-11 07:08:46,217 | INFO     | current server update state: UPDATING_FINAL
[2025-10-11 03:09:39] 2025-10-11 07:08:46,217 | INFO     | update_server=False
[2025-10-11 03:09:39] 2025-10-11 07:08:46,217 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-11 03:09:39] 2025-10-11 07:08:46,218 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-11 03:09:39] 2025-10-11 07:08:46,218 | INFO     | aborting loop
[2025-10-11 03:09:39] 2025-10-11 07:08:46,218 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-11 03:09:39] 2025-10-11 07:08:46,218 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-11 03:09:39] 2025-10-11 07:08:46,779 | INFO     | all data control threads have been joined
[2025-10-11 03:09:39] 2025-10-11 07:08:46,801 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-11 03:09:39] 2025-10-11 07:08:46,908 | INFO     | all job control threads have been joined
[2025-10-11 03:09:39] 2025-10-11 07:08:47,223 | INFO     | [job] retrieve thread has finished
[2025-10-11 03:09:39] 2025-10-11 07:08:47,224 | INFO     | [job] queue monitor thread has finished
[2025-10-11 03:09:39] 2025-10-11 07:08:47,224 | INFO     | [job] job monitor thread has finished
[2025-10-11 03:09:39] 2025-10-11 07:08:47,427 | INFO     | all payload control threads have been joined
[2025-10-11 03:09:39] 2025-10-11 07:08:47,785 | INFO     | [data] control thread has finished
[2025-10-11 03:09:39] 2025-10-11 07:08:47,802 | INFO     | [payload] failed_post thread has finished
[2025-10-11 03:09:39] 2025-10-11 07:08:47,913 | INFO     | [job] control thread has finished
[2025-10-11 03:09:39] 2025-10-11 07:08:47,951 | INFO     | [payload] execute_payloads thread has finished
[2025-10-11 03:09:39] 2025-10-11 07:08:48,182 | INFO     | [job] validate thread has finished
[2025-10-11 03:09:39] 2025-10-11 07:08:48,425 | INFO     | [payload] validate_pre thread has finished
[2025-10-11 03:09:39] 2025-10-11 07:08:48,433 | INFO     | [payload] control thread has finished
[2025-10-11 03:09:39] 2025-10-11 07:08:48,454 | INFO     | [job] create_data_payload thread has finished
[2025-10-11 03:09:39] 2025-10-11 07:08:48,488 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-11 03:09:39] 2025-10-11 07:08:48,632 | INFO     | [payload] validate_post thread has finished
[2025-10-11 03:09:39] 2025-10-11 07:08:48,665 | INFO     | [data] copytool_in thread has finished
[2025-10-11 03:09:39] 2025-10-11 07:08:48,807 | INFO     | [data] copytool_out thread has finished
[2025-10-11 03:09:39] 2025-10-11 07:08:50,222 | INFO     | [data] queue_monitor thread has finished
[2025-10-11 03:09:39] 2025-10-11 07:09:16,738 | INFO     | PID=20316 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-11 03:09:39] 2025-10-11 07:09:16,747 | INFO     | found 0 job(s) in 20 queues
[2025-10-11 03:09:39] 2025-10-11 07:09:16,747 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-11 03:09:39] 2025-10-11 07:09:16,747 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-11 03:09:39] 2025-10-11 07:09:32,067 | INFO     | [monitor] cgroup control has ended
[2025-10-11 03:09:39] 2025-10-11 07:09:33,952 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140340490073920)>', '<ExcThread(monitor, started 140339289499392)>']
[2025-10-11 03:09:39] 2025-10-11 07:09:34,832 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-11 03:09:39] 2025-10-11 07:09:34,832 | INFO     | [monitor] control thread has ended
[2025-10-11 03:09:39] 2025-10-11 07:09:38,978 | INFO     | all workflow threads have been joined
[2025-10-11 03:09:39] 2025-10-11 07:09:38,978 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-11 03:09:39] 2025-10-11 07:09:38,979 | INFO     | traces error code: 0
[2025-10-11 03:09:39] 2025-10-11 07:09:38,979 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-11 03:09:39] 2025-10-11 07:09:39,076 [wrapper] ==== pilot stdout END ====
[2025-10-11 03:09:39] 2025-10-11 07:09:39,080 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-11 03:09:39] 2025-10-11 07:09:39,084 [wrapper] pilotpid: 20316
[2025-10-11 03:09:39] 2025-10-11 07:09:39,088 [wrapper] Pilot exit status: 0
[2025-10-11 03:09:39] 2025-10-11 07:09:39,104 [wrapper] pandaids: 6837707174
[2025-10-11 03:09:39] 2025-10-11 07:09:39,151 [wrapper] cleanup supervisor_pilot 22356 20317
[2025-10-11 03:09:39] 2025-10-11 07:09:39,155 [wrapper] Test setup, not cleaning
[2025-10-11 03:09:39] 2025-10-11 07:09:39,160 [wrapper] apfmon messages muted
[2025-10-11 03:09:39] 2025-10-11 07:09:39,163 [wrapper] ==== wrapper stdout END ====
[2025-10-11 03:09:39] 2025-10-11 07:09:39,167 [wrapper] ==== wrapper stderr END ====
[2025-10-11 03:09:39]  *** Error codes and diagnostics ***
[2025-10-11 03:09:39]     "exeErrorCode": 0,
[2025-10-11 03:09:39]     "exeErrorDiag": "",
[2025-10-11 03:09:39]     "pilotErrorCode": 0,
[2025-10-11 03:09:39]     "pilotErrorDiag": "",
[2025-10-11 03:09:39]  *** Listing of results directory ***
[2025-10-11 03:09:39] total 405032
[2025-10-11 03:09:39] -rw-r--r-- 1 boincer umatlas    557409 Oct 10 14:53 pilot3.tar.gz
[2025-10-11 03:09:39] -rw-r--r-- 1 boincer umatlas      5112 Oct 10 15:00 queuedata.json
[2025-10-11 03:09:39] -rwx------ 1 boincer umatlas     36292 Oct 10 15:01 runpilot2-wrapper.sh
[2025-10-11 03:09:39] -rw-r--r-- 1 boincer umatlas       100 Oct 11 02:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-11 03:09:39] -rwxr-xr-x 1 boincer umatlas      7986 Oct 11 02:04 run_atlas
[2025-10-11 03:09:39] -rw-r--r-- 1 boincer umatlas       105 Oct 11 02:04 job.xml
[2025-10-11 03:09:39] -rw-r--r-- 2 boincer umatlas 220351298 Oct 11 02:04 EVNT.46676267._001759.pool.root.1
[2025-10-11 03:09:39] -rw-r--r-- 2 boincer umatlas     15120 Oct 11 02:04 start_atlas.sh
[2025-10-11 03:09:39] drwxrwx--x 2 boincer umatlas      4096 Oct 11 02:04 shared
[2025-10-11 03:09:39] -rw-r--r-- 2 boincer umatlas    569681 Oct 11 02:04 input.tar.gz
[2025-10-11 03:09:39] -rw-r--r-- 1 boincer umatlas         0 Oct 11 02:04 boinc_lockfile
[2025-10-11 03:09:39] -rw-r--r-- 1 boincer umatlas      2549 Oct 11 02:04 pandaJob.out
[2025-10-11 03:09:39] -rw------- 1 boincer umatlas    975533 Oct 11 02:04 agis_schedconf.cvmfs.json
[2025-10-11 03:09:39] -rw------- 1 boincer umatlas   1560580 Oct 11 02:04 agis_ddmendpoints.agis.ALL.json
[2025-10-11 03:09:39] drwx------ 5 boincer umatlas      4096 Oct 11 02:04 pilot3
[2025-10-11 03:09:39] -rw-r--r-- 1 boincer umatlas      5954 Oct 11 03:00 init_data.xml
[2025-10-11 03:09:39] -rw------- 1 boincer umatlas 188629543 Oct 11 03:08 HITS.46676269._043439.pool.root.1
[2025-10-11 03:09:39] -rw------- 1 boincer umatlas      1049 Oct 11 03:08 memory_monitor_summary.json
[2025-10-11 03:09:39] -rw-r--r-- 1 boincer umatlas       530 Oct 11 03:08 boinc_task_state.xml
[2025-10-11 03:09:39] -rw------- 1 boincer umatlas    363166 Oct 11 03:08 log.46676269._043439.job.log.tgz.1
[2025-10-11 03:09:39] -rw------- 1 boincer umatlas      7851 Oct 11 03:08 heartbeat.json
[2025-10-11 03:09:39] -rw-r--r-- 1 boincer umatlas      8192 Oct 11 03:09 boinc_mmap_file
[2025-10-11 03:09:39] -rw-r--r-- 1 boincer umatlas        27 Oct 11 03:09 wrapper_checkpoint.txt
[2025-10-11 03:09:39] -rw------- 1 boincer umatlas        95 Oct 11 03:09 pilot_heartbeat.json
[2025-10-11 03:09:39] -rw------- 1 boincer umatlas      4746 Oct 11 03:09 pilotlog.txt
[2025-10-11 03:09:39] -rw------- 1 boincer umatlas    568003 Oct 11 03:09 log.46676269._043439.job.log.1
[2025-10-11 03:09:39] -rw------- 1 boincer umatlas       357 Oct 11 03:09 output.list
[2025-10-11 03:09:39] -rw-r--r-- 1 boincer umatlas       620 Oct 11 03:09 runtime_log
[2025-10-11 03:09:39] -rw------- 1 boincer umatlas    952320 Oct 11 03:09 result.tar.gz
[2025-10-11 03:09:39] -rw-r--r-- 1 boincer umatlas      8705 Oct 11 03:09 runtime_log.err
[2025-10-11 03:09:39] -rw------- 1 boincer umatlas       659 Oct 11 03:09 lovNDm5XXR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmI9dNDmXf6I9n.diag
[2025-10-11 03:09:39] -rw-r--r-- 1 boincer umatlas     21791 Oct 11 03:09 stderr.txt
[2025-10-11 03:09:39] HITS file was successfully produced:
[2025-10-11 03:09:39] -rw------- 1 boincer umatlas 188629543 Oct 11 03:08 shared/HITS.pool.root.1
[2025-10-11 03:09:39]  *** Contents of shared directory: ***
[2025-10-11 03:09:39] total 400916
[2025-10-11 03:09:39] -rw-r--r-- 2 boincer umatlas 220351298 Oct 11 02:04 ATLAS.root_0
[2025-10-11 03:09:39] -rw-r--r-- 2 boincer umatlas     15120 Oct 11 02:04 start_atlas.sh
[2025-10-11 03:09:39] -rw-r--r-- 2 boincer umatlas    569681 Oct 11 02:04 input.tar.gz
[2025-10-11 03:09:39] -rw------- 1 boincer umatlas 188629543 Oct 11 03:08 HITS.pool.root.1
[2025-10-11 03:09:39] -rw------- 1 boincer umatlas    952320 Oct 11 03:09 result.tar.gz
03:09:40 (16579): run_atlas exited; CPU time 41285.033594
03:09:40 (16579): called boinc_finish(0)

</stderr_txt>
]]>

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