Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
16:54:10 (1925420): wrapper (7.7.26015): starting
16:54:10 (1925420): wrapper: running run_atlas (--nthreads 2)
[2025-10-11 16:54:10] Arguments: --nthreads 2
[2025-10-11 16:54:10] Threads: 2
[2025-10-11 16:54:10] Checking for CVMFS
[2025-10-11 16:54:10] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 16:54:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 16:54:10] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 16:54:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 16:54:10] 2.9.2.0 1267943 2860 58992 151587 2 57 31298459 36864001 0 130560 0 1736259 99.988 98315 1130 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-11 16:54:10] CVMFS is ok
[2025-10-11 16:54:10] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 16:54:10] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 16:54:10] Further information can be found at the LHC@home message board.
[2025-10-11 16:54:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 16:54:10] Checking for apptainer binary...
[2025-10-11 16:54:10] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 16:54:10] Running /usr/bin/apptainer --version
[2025-10-11 16:54:10] apptainer version 1.4.1-1.1
[2025-10-11 16:54:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 16:54:10] thA334a
[2025-10-11 16:54:10] apptainer works
[2025-10-11 16:54:10] Set ATHENA_PROC_NUMBER=2
[2025-10-11 16:54:10] Set ATHENA_CORE_NUMBER=2
[2025-10-11 16:54:10] Starting ATLAS job with PandaID=6837875994
[2025-10-11 16:54:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-11 18:58:39]  *** The last 200 lines of the pilot log: ***
[2025-10-11 18:58:39] 2025-10-11 16:57:43,917 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-11 18:58:39] 2025-10-11 16:57:43,917 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-11 18:58:39] 2025-10-11 16:57:43,917 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-11 18:58:39] 2025-10-11 16:57:43,917 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-11 18:58:39] 2025-10-11 16:57:43,917 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-11 18:58:39] 2025-10-11 16:57:43,917 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-11 18:58:39] 2025-10-11 16:57:43,917 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-11 18:58:39] 2025-10-11 16:57:43,917 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-11 18:58:39] 2025-10-11 16:57:43,917 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-11 18:58:39] 2025-10-11 16:57:43,917 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-11 18:58:39] 2025-10-11 16:57:43,917 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-11 18:58:39] 2025-10-11 16:57:43,918 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-11 18:58:39] 2025-10-11 16:57:43,918 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-11 18:58:39] 2025-10-11 16:57:43,918 | INFO     | job 6837875994 has completed (purged errors)
[2025-10-11 18:58:39] 2025-10-11 16:57:43,918 | INFO     | overall cleanup function is called
[2025-10-11 18:58:39] 2025-10-11 16:57:44,924 | INFO     | --- collectZombieJob: --- 10, [1935538]
[2025-10-11 18:58:39] 2025-10-11 16:57:44,924 | INFO     | zombie collector waiting for pid 1935538
[2025-10-11 18:58:39] 2025-10-11 16:57:44,924 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-11 18:58:39] 2025-10-11 16:57:44,925 | INFO     | collected zombie processes
[2025-10-11 18:58:39] 2025-10-11 16:57:44,925 | INFO     | will attempt to kill all subprocesses of pid=1935538
[2025-10-11 18:58:39] 2025-10-11 16:57:44,957 | INFO     | process IDs to be killed: [1935538] (in reverse order)
[2025-10-11 18:58:39] 2025-10-11 16:57:44,978 | WARNING  | found no corresponding commands to process id(s)
[2025-10-11 18:58:39] 2025-10-11 16:57:44,978 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-11 18:58:39] 2025-10-11 16:57:44,979 | INFO     | did not find any defunct processes belonging to 1935538
[2025-10-11 18:58:39] 2025-10-11 16:57:44,979 | INFO     | did not find any defunct processes belonging to 1935538
[2025-10-11 18:58:39] 2025-10-11 16:57:44,980 | INFO     | ready for new job
[2025-10-11 18:58:39] 2025-10-11 16:57:44,980 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-11 18:58:39] 2025-10-11 16:57:44,980 | INFO     | ***************************************
[2025-10-11 18:58:39] 2025-10-11 16:57:44,980 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-11 18:58:39] 2025-10-11 16:57:44,980 | INFO     | ***************************************
[2025-10-11 18:58:39] 2025-10-11 16:57:44,980 | INFO     | 
[2025-10-11 18:58:39] 2025-10-11 16:57:44,980 | INFO     | architecture information:
[2025-10-11 18:58:39] 2025-10-11 16:57:44,981 | INFO     | executing command: cat /etc/os-release
[2025-10-11 18:58:39] 2025-10-11 16:57:44,989 | INFO     | cat /etc/os-release:
[2025-10-11 18:58:39] NAME="CentOS Linux"
[2025-10-11 18:58:39] VERSION="7 (Core)"
[2025-10-11 18:58:39] ID="centos"
[2025-10-11 18:58:39] ID_LIKE="rhel fedora"
[2025-10-11 18:58:39] VERSION_ID="7"
[2025-10-11 18:58:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-11 18:58:39] ANSI_COLOR="0;31"
[2025-10-11 18:58:39] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-11 18:58:39] HOME_URL="https://www.centos.org/"
[2025-10-11 18:58:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-11 18:58:39] 
[2025-10-11 18:58:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-11 18:58:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-11 18:58:39] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-11 18:58:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-11 18:58:39] 
[2025-10-11 18:58:39] 2025-10-11 16:57:44,989 | INFO     | ***************************************
[2025-10-11 18:58:39] 2025-10-11 16:57:45,492 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-11 18:58:39] 2025-10-11 16:57:45,504 | INFO     | sufficient remaining disk space (492623101952 B)
[2025-10-11 18:58:39] 2025-10-11 16:57:45,504 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-11 18:58:39] 2025-10-11 16:57:45,504 | INFO     | current server update state: UPDATING_FINAL
[2025-10-11 18:58:39] 2025-10-11 16:57:45,504 | INFO     | update_server=False
[2025-10-11 18:58:39] 2025-10-11 16:57:45,504 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-11 18:58:39] 2025-10-11 16:57:45,660 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-11 18:58:39] 2025-10-11 16:57:45,827 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-11 18:58:39] 2025-10-11 16:57:45,828 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-11 18:58:39] 2025-10-11 16:57:45,828 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-11 18:58:39] 2025-10-11 16:57:45,828 | INFO     | will abort loop
[2025-10-11 18:58:39] 2025-10-11 16:57:46,064 | INFO     | all job control threads have been joined
[2025-10-11 18:58:39] 2025-10-11 16:57:46,440 | INFO     | all data control threads have been joined
[2025-10-11 18:58:39] 2025-10-11 16:57:46,510 | INFO     | [job] retrieve thread has finished
[2025-10-11 18:58:39] 2025-10-11 16:57:46,522 | INFO     | [job] validate thread has finished
[2025-10-11 18:58:39] 2025-10-11 16:57:46,611 | INFO     | [job] create_data_payload thread has finished
[2025-10-11 18:58:39] 2025-10-11 16:57:46,648 | INFO     | [payload] execute_payloads thread has finished
[2025-10-11 18:58:39] 2025-10-11 16:57:46,822 | INFO     | [payload] validate_pre thread has finished
[2025-10-11 18:58:39] 2025-10-11 16:57:46,834 | INFO     | [job] job monitor thread has finished
[2025-10-11 18:58:39] 2025-10-11 16:57:46,848 | INFO     | all payload control threads have been joined
[2025-10-11 18:58:39] 2025-10-11 16:57:47,069 | INFO     | [job] control thread has finished
[2025-10-11 18:58:39] 2025-10-11 16:57:47,253 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-11 18:58:39] 2025-10-11 16:57:47,368 | INFO     | [data] copytool_in thread has finished
[2025-10-11 18:58:39] 2025-10-11 16:57:47,446 | INFO     | [data] control thread has finished
[2025-10-11 18:58:39] 2025-10-11 16:57:47,477 | INFO     | [payload] validate_post thread has finished
[2025-10-11 18:58:39] 2025-10-11 16:57:47,666 | INFO     | [data] copytool_out thread has finished
[2025-10-11 18:58:39] 2025-10-11 16:57:47,854 | INFO     | [payload] control thread has finished
[2025-10-11 18:58:39] 2025-10-11 16:57:47,903 | INFO     | [payload] failed_post thread has finished
[2025-10-11 18:58:39] 2025-10-11 16:57:48,479 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-11 18:58:39] 2025-10-11 16:57:49,485 | INFO     | [job] queue monitor thread has finished
[2025-10-11 18:58:39] 2025-10-11 16:57:51,260 | INFO     | [data] queue_monitor thread has finished
[2025-10-11 18:58:39] 2025-10-11 16:57:56,378 | INFO     | job.realtimelogging is not enabled
[2025-10-11 18:58:39] 2025-10-11 16:57:57,384 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-11 18:58:39] 2025-10-11 16:58:15,757 | INFO     | PID=1929127 has CPU usage=0.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-11 18:58:39] 2025-10-11 16:58:15,758 | INFO     | found 0 job(s) in 20 queues
[2025-10-11 18:58:39] 2025-10-11 16:58:15,758 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-11 18:58:39] 2025-10-11 16:58:15,758 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-11 18:58:39] 2025-10-11 16:58:31,842 | INFO     | [monitor] cgroup control has ended
[2025-10-11 18:58:39] 2025-10-11 16:58:33,916 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139989832525632)>', '<ExcThread(monitor, started 139989308380928)>']
[2025-10-11 18:58:39] 2025-10-11 16:58:34,858 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-11 18:58:39] 2025-10-11 16:58:34,858 | INFO     | [monitor] control thread has ended
[2025-10-11 18:58:39] 2025-10-11 16:58:38,942 | INFO     | all workflow threads have been joined
[2025-10-11 18:58:39] 2025-10-11 16:58:38,942 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-11 18:58:39] 2025-10-11 16:58:38,943 | INFO     | traces error code: 0
[2025-10-11 18:58:39] 2025-10-11 16:58:38,943 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-11 18:58:39] 2025-10-11 16:58:39,019 [wrapper] ==== pilot stdout END ====
[2025-10-11 18:58:39] 2025-10-11 16:58:39,021 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-11 18:58:39] 2025-10-11 16:58:39,023 [wrapper] pilotpid: 1929127
[2025-10-11 18:58:39] 2025-10-11 16:58:39,026 [wrapper] Pilot exit status: 0
[2025-10-11 18:58:39] 2025-10-11 16:58:39,032 [wrapper] pandaids: 6837875994
[2025-10-11 18:58:39] 2025-10-11 16:58:39,044 [wrapper] cleanup supervisor_pilot 1949615 1929128
[2025-10-11 18:58:39] 2025-10-11 16:58:39,046 [wrapper] Test setup, not cleaning
[2025-10-11 18:58:39] 2025-10-11 16:58:39,048 [wrapper] apfmon messages muted
[2025-10-11 18:58:39] 2025-10-11 16:58:39,050 [wrapper] ==== wrapper stdout END ====
[2025-10-11 18:58:39] 2025-10-11 16:58:39,052 [wrapper] ==== wrapper stderr END ====
[2025-10-11 18:58:39]  *** Error codes and diagnostics ***
[2025-10-11 18:58:39]     "exeErrorCode": 0,
[2025-10-11 18:58:39]     "exeErrorDiag": "",
[2025-10-11 18:58:39]     "pilotErrorCode": 0,
[2025-10-11 18:58:39]     "pilotErrorDiag": "",
[2025-10-11 18:58:39]  *** Listing of results directory ***
[2025-10-11 18:58:39] total 416704
[2025-10-11 18:58:39] -rw-r--r-- 1 boinc boinc    557409 Oct 11 02:33 pilot3.tar.gz
[2025-10-11 18:58:39] -rwx------ 1 boinc boinc     36292 Oct 11 02:35 runpilot2-wrapper.sh
[2025-10-11 18:58:39] -rw-r--r-- 1 boinc boinc      5112 Oct 11 02:35 queuedata.json
[2025-10-11 18:58:39] -rw-r--r-- 1 boinc boinc       100 Oct 11 16:54 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-11 18:58:39] -rwxr-xr-x 1 boinc boinc      7986 Oct 11 16:54 run_atlas
[2025-10-11 18:58:39] -rw-r--r-- 1 boinc boinc       105 Oct 11 16:54 job.xml
[2025-10-11 18:58:39] -rw-r--r-- 2 boinc boinc 224702460 Oct 11 16:54 EVNT.46676267._001935.pool.root.1
[2025-10-11 18:58:39] drwxrwx--x 2 boinc boinc      4096 Oct 11 16:54 shared
[2025-10-11 18:58:39] -rw-r--r-- 2 boinc boinc    569677 Oct 11 16:54 input.tar.gz
[2025-10-11 18:58:39] -rw-r--r-- 2 boinc boinc     15120 Oct 11 16:54 start_atlas.sh
[2025-10-11 18:58:39] -rw-r--r-- 1 boinc boinc         0 Oct 11 16:54 boinc_setup_complete
[2025-10-11 18:58:39] -rw-r--r-- 1 boinc boinc      6207 Oct 11 16:54 init_data.xml
[2025-10-11 18:58:39] -rw-r--r-- 1 boinc boinc         0 Oct 11 16:54 boinc_lockfile
[2025-10-11 18:58:39] -rw-r--r-- 1 boinc boinc      2549 Oct 11 16:54 pandaJob.out
[2025-10-11 18:58:39] -rw------- 1 boinc boinc    975536 Oct 11 16:54 agis_schedconf.cvmfs.json
[2025-10-11 18:58:39] -rw------- 1 boinc boinc   1560580 Oct 11 16:54 agis_ddmendpoints.agis.ALL.json
[2025-10-11 18:58:39] drwx------ 5 boinc boinc      4096 Oct 11 16:54 pilot3
[2025-10-11 18:58:39] -rw------- 1 boinc boinc 195422573 Oct 11 18:57 HITS.46676269._047918.pool.root.1
[2025-10-11 18:58:39] -rw-r--r-- 1 boinc boinc       529 Oct 11 18:57 boinc_task_state.xml
[2025-10-11 18:58:39] -rw------- 1 boinc boinc      1014 Oct 11 18:57 memory_monitor_summary.json
[2025-10-11 18:58:39] -rw------- 1 boinc boinc    266266 Oct 11 18:57 log.46676269._047918.job.log.tgz.1
[2025-10-11 18:58:39] -rw------- 1 boinc boinc      7751 Oct 11 18:57 heartbeat.json
[2025-10-11 18:58:39] -rw------- 1 boinc boinc        95 Oct 11 18:58 pilot_heartbeat.json
[2025-10-11 18:58:39] -rw-r--r-- 1 boinc boinc      8192 Oct 11 18:58 boinc_mmap_file
[2025-10-11 18:58:39] -rw-r--r-- 1 boinc boinc        27 Oct 11 18:58 wrapper_checkpoint.txt
[2025-10-11 18:58:39] -rw------- 1 boinc boinc      5010 Oct 11 18:58 pilotlog.txt
[2025-10-11 18:58:39] -rw------- 1 boinc boinc   1071766 Oct 11 18:58 log.46676269._047918.job.log.1
[2025-10-11 18:58:39] -rw------- 1 boinc boinc       357 Oct 11 18:58 output.list
[2025-10-11 18:58:39] -rw-r--r-- 1 boinc boinc       620 Oct 11 18:58 runtime_log
[2025-10-11 18:58:39] -rw------- 1 boinc boinc   1361920 Oct 11 18:58 result.tar.gz
[2025-10-11 18:58:39] -rw-r--r-- 1 boinc boinc      8782 Oct 11 18:58 runtime_log.err
[2025-10-11 18:58:39] -rw------- 1 boinc boinc       660 Oct 11 18:58 PgVMDmelcR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm9teNDmys9xnm.diag
[2025-10-11 18:58:39] -rw-r--r-- 1 boinc boinc     12465 Oct 11 18:58 stderr.txt
[2025-10-11 18:58:39] HITS file was successfully produced:
[2025-10-11 18:58:39] -rw------- 1 boinc boinc 195422573 Oct 11 18:57 shared/HITS.pool.root.1
[2025-10-11 18:58:39]  *** Contents of shared directory: ***
[2025-10-11 18:58:39] total 412196
[2025-10-11 18:58:39] -rw-r--r-- 2 boinc boinc 224702460 Oct 11 16:54 ATLAS.root_0
[2025-10-11 18:58:39] -rw-r--r-- 2 boinc boinc    569677 Oct 11 16:54 input.tar.gz
[2025-10-11 18:58:39] -rw-r--r-- 2 boinc boinc     15120 Oct 11 16:54 start_atlas.sh
[2025-10-11 18:58:39] -rw------- 1 boinc boinc 195422573 Oct 11 18:57 HITS.pool.root.1
[2025-10-11 18:58:39] -rw------- 1 boinc boinc   1361920 Oct 11 18:58 result.tar.gz
18:58:40 (1925420): run_atlas exited; CPU time 14387.630105
18:58:40 (1925420): called boinc_finish(0)

</stderr_txt>
]]>

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