Stderr output

<core_client_version>8.2.5</core_client_version>
<![CDATA[
<stderr_txt>
2025-10-11 02:17:14 (38044): vboxwrapper version 26210
2025-10-11 02:17:14 (38044): BOINC client version: 8.2.5
2025-10-11 02:17:15 (38044): Detected: VirtualBox VboxManage Interface (Version: 7.2.2)
2025-10-11 02:17:15 (38044): Successfully copied 'init_data.xml' to the shared directory.
2025-10-11 02:17:15 (38044): Create VM. (boinc_7c7dff64bf131200, slot#0)
2025-10-11 02:17:16 (38044): Setting Memory Size for VM. (4300MB)
2025-10-11 02:17:16 (38044): Setting CPU Count for VM. (3)
2025-10-11 02:17:16 (38044): Setting Chipset Options for VM.
2025-10-11 02:17:17 (38044): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-10-11 02:17:17 (38044): Setting Boot Options for VM.
2025-10-11 02:17:18 (38044): Setting Network Configuration for NAT. (Driver: virtio)
2025-10-11 02:17:18 (38044): Enabling VM Network Access.
2025-10-11 02:17:18 (38044): Disabling USB Support for VM.
2025-10-11 02:17:18 (38044): Disabling COM Port Support for VM.
2025-10-11 02:17:19 (38044): Disabling LPT Port Support for VM.
2025-10-11 02:17:19 (38044): Disabling Audio Support for VM.
2025-10-11 02:17:19 (38044): Disabling Clipboard Support for VM.
2025-10-11 02:17:19 (38044): Disabling Drag and Drop Support for VM.
2025-10-11 02:17:20 (38044): Adding storage controller(s) to VM.
2025-10-11 02:17:20 (38044): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-10-11 02:17:20 (38044): Adding VirtualBox Guest Additions to VM.
2025-10-11 02:17:21 (38044): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-10-11 02:17:21 (38044): forwarding host port 61677 to guest port 80
2025-10-11 02:17:21 (38044): Enabling remote desktop for VM.
2025-10-11 02:17:22 (38044): Enabling shared directory for VM.
2025-10-11 02:17:22 (38044): Starting VM using VBoxManage interface. (boinc_7c7dff64bf131200, slot#0)
2025-10-11 02:17:27 (38044): Successfully started VM. (PID = '8264')
2025-10-11 02:17:27 (38044): Reporting VM Process ID to BOINC.
2025-10-11 02:17:27 (38044): Guest Log: BIOS: VirtualBox 7.2.2
2025-10-11 02:17:27 (38044): Guest Log: CPUID EDX: 0x178bfbff
2025-10-11 02:17:27 (38044): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-10-11 02:17:27 (38044): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-10-11 02:17:27 (38044): VM state change detected. (old = 'poweredoff', new = 'running')
2025-10-11 02:17:27 (38044): Detected: Web Application Enabled (http://localhost:61677)
2025-10-11 02:17:27 (38044): Detected: Remote Desktop Enabled (localhost:61678)
2025-10-11 02:17:27 (38044): Preference change detected
2025-10-11 02:17:27 (38044): Setting CPU throttle for VM. (100%)
2025-10-11 02:17:27 (38044): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-10-11 02:17:29 (38044): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-10-11 02:17:29 (38044): Guest Log: BIOS: Booting from Hard Disk...
2025-10-11 02:17:32 (38044): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-10-11 02:17:32 (38044): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-10-11 02:17:32 (38044): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-10-11 02:17:32 (38044): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-10-11 02:17:32 (38044): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-10-11 02:17:32 (38044): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-10-11 02:17:32 (38044): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-10-11 02:17:32 (38044): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-10-11 02:17:32 (38044): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-10-11 02:17:32 (38044): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-10-11 02:17:32 (38044): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-10-11 02:17:32 (38044): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-10-11 02:17:32 (38044): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-10-11 02:17:32 (38044): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-10-11 02:17:32 (38044): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-10-11 02:17:32 (38044): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-10-11 02:17:32 (38044): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-10-11 02:17:32 (38044): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-10-11 02:17:32 (38044): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-10-11 02:17:32 (38044): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-10-11 02:17:32 (38044): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-10-11 02:17:32 (38044): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-10-11 02:17:32 (38044): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-10-11 02:17:32 (38044): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-10-11 02:17:32 (38044): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-10-11 02:17:32 (38044): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-10-11 02:17:32 (38044): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-10-11 02:17:32 (38044): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-10-11 02:17:32 (38044): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-10-11 02:17:32 (38044): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-10-11 02:17:32 (38044): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-10-11 02:17:32 (38044): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-10-11 02:18:15 (38044): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-10-11 02:18:15 (38044): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-10-11 02:18:18 (38044): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-10-11 02:18:18 (38044): Guest Log: 00:00:00.000091 main     Log opened 2025-10-11T02:18:16.513112000Z
2025-10-11 02:18:18 (38044): Guest Log: 00:00:00.000153 main     OS Product: Linux
2025-10-11 02:18:18 (38044): Guest Log: 00:00:00.000172 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-10-11 02:18:18 (38044): Guest Log: 00:00:00.000187 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-10-11 02:18:18 (38044): Guest Log: 00:00:00.000201 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-10-11 02:18:18 (38044): Guest Log: 00:00:00.000201 main     Process ID: 1288
2025-10-11 02:18:18 (38044): Guest Log: 00:00:00.000202 main     Package type: LINUX_64BITS_GENERIC
2025-10-11 02:18:18 (38044): Guest Log: 00:00:00.000660 main     5.2.32 r132073 started. Verbose level = 0
2025-10-11 02:18:18 (38044): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-10-11 02:18:18 (38044): Guest Log: [INFO] Mounting shared directory
2025-10-11 02:18:18 (38044): Guest Log: [INFO] Checking for init_data.xml
2025-10-11 02:18:20 (38044): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-10-11 02:18:20 (38044): Guest Log: [INFO] Detected branch: prod
2025-10-11 02:18:20 (38044): Guest Log: This is the prod version of the ATLAS job wrapper
2025-10-11 02:18:20 (38044): Guest Log: Copying input files
2025-10-11 02:18:21 (38044): Guest Log: Copied input files into RunAtlas.
2025-10-11 02:18:21 (38044): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-10-11 02:18:21 (38044): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-10-11 02:18:21 (38044): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-10-11 02:18:21 (38044): Guest Log: Further information can be found at the LHC@home message board.
2025-10-11 02:18:28 (38044): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-10-11 02:18:28 (38044): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-10-11 02:18:28 (38044): Guest Log: 2.6.3.0 1564 0 30164 151575 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-10-11 02:18:28 (38044): Guest Log: 00:00:10.001867 timesync vgsvcTimeSyncWorker: Radical guest time change: 14 371 681 709 000ns (GuestNow=1 760 163 468 196 288 000 ns GuestLast=1 760 149 096 514 579 000 ns fSetTimeLastLoop=true )
2025-10-11 02:18:28 (38044): Guest Log: copied the webapp to /var/www
2025-10-11 02:18:28 (38044): Guest Log: ATHENA_PROC_NUMBER=3
2025-10-11 02:18:28 (38044): Guest Log: ATHENA_CORE_NUMBER=3
2025-10-11 02:18:28 (38044): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-10-11 02:18:28 (38044): Guest Log:  *** Starting ATLAS job. (PandaID=6837875579 taskID=46676269) ***
2025-10-11 03:57:29 (38044): Status Report: Elapsed Time: '6000.000000'
2025-10-11 03:57:29 (38044): Status Report: CPU Time: '17187.687500'
2025-10-11 04:46:13 (38044): Guest Log:  *** Job finished ***
2025-10-11 04:46:13 (38044): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-10-11 04:46:13 (38044): Guest Log: 2025-10-11 08:45:23,079 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-10-11 04:46:13 (38044): Guest Log: 2025-10-11 08:45:23,079 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-10-11 04:46:13 (38044): Guest Log: 2025-10-11 08:45:28,023 | INFO     | [monitor] cgroup control has ended
2025-10-11 04:46:13 (38044): Guest Log: 2025-10-11 08:45:29,323 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140215358175040)>', '<ExcThread(monitor, started 140214039213824)>']
2025-10-11 04:46:13 (38044): Guest Log: 2025-10-11 08:45:30,098 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-10-11 04:46:13 (38044): Guest Log: 2025-10-11 08:45:30,098 | INFO     | [monitor] control thread has ended
2025-10-11 04:46:13 (38044): Guest Log: 2025-10-11 08:45:34,330 | INFO     | all workflow threads have been joined
2025-10-11 04:46:13 (38044): Guest Log: 2025-10-11 08:45:34,330 | INFO     | end of generic workflow (traces error code: 0)
2025-10-11 04:46:13 (38044): Guest Log: 2025-10-11 08:45:34,330 | INFO     | traces error code: 0
2025-10-11 04:46:13 (38044): Guest Log: 2025-10-11 08:45:34,330 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-10-11 04:46:13 (38044): Guest Log: 2025-10-11 08:45:34,403 [wrapper] ==== pilot stdout END ====
2025-10-11 04:46:13 (38044): Guest Log: 2025-10-11 08:45:34,406 [wrapper] ==== wrapper stdout RESUME ====
2025-10-11 04:46:13 (38044): Guest Log: 2025-10-11 08:45:34,408 [wrapper] pilotpid: 5928
2025-10-11 04:46:13 (38044): Guest Log: 2025-10-11 08:45:34,411 [wrapper] Pilot exit status: 0
2025-10-11 04:46:13 (38044): Guest Log: 2025-10-11 08:45:34,457 [wrapper] pandaids: 6837875579
2025-10-11 04:46:13 (38044): Guest Log: 2025-10-11 08:45:34,473 [wrapper] cleanup supervisor_pilot  7557 5929
2025-10-11 04:46:13 (38044): Guest Log: 2025-10-11 08:45:34,477 [wrapper] Test setup, not cleaning
2025-10-11 04:46:13 (38044): Guest Log: 2025-10-11 08:45:34,480 [wrapper] apfmon messages muted
2025-10-11 04:46:13 (38044): Guest Log: 2025-10-11 08:45:34,482 [wrapper] ==== wrapper stdout END ====
2025-10-11 04:46:13 (38044): Guest Log: 2025-10-11 08:45:34,485 [wrapper] ==== wrapper stderr END ====
2025-10-11 04:46:13 (38044): Guest Log:  *** Error codes and diagnostics ***
2025-10-11 04:46:13 (38044): Guest Log:     "exeErrorCode": 0,
2025-10-11 04:46:13 (38044): Guest Log:     "exeErrorDiag": "",
2025-10-11 04:46:13 (38044): Guest Log:     "pilotErrorCode": 0,
2025-10-11 04:46:13 (38044): Guest Log:     "pilotErrorDiag": "",
2025-10-11 04:46:13 (38044): Guest Log:  *** Listing of results directory ***
2025-10-11 04:46:13 (38044): Guest Log: total 197124
2025-10-11 04:46:13 (38044): Guest Log: -rw-r--r--. 1 atlas atlas    557409 Oct 11 00:00 pilot3.tar.gz
2025-10-11 04:46:13 (38044): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Oct 11 00:13 queuedata.json
2025-10-11 04:46:13 (38044): Guest Log: -rwx------. 1 atlas atlas     36292 Oct 11 00:14 runpilot2-wrapper.sh
2025-10-11 04:46:13 (38044): Guest Log: -rwxr-xr-x. 1 atlas atlas      9027 Oct 11 06:17 init_data.xml
2025-10-11 04:46:13 (38044): Guest Log: -rwxr-xr-x. 1 atlas atlas    569680 Oct 11 06:17 input.tar.gz
2025-10-11 04:46:13 (38044): Guest Log: -rwxr-xr-x. 1 atlas atlas     15120 Oct 11 06:17 start_atlas.sh
2025-10-11 04:46:13 (38044): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Oct 11 06:17 EVNT.46676267._001919.pool.root.1 -> /data/./ATLAS.root_0
2025-10-11 04:46:13 (38044): Guest Log: -rw-r--r--. 1 atlas atlas      2550 Oct 11 06:17 pandaJob.out
2025-10-11 04:46:13 (38044): Guest Log: -rw-------. 1 atlas atlas    975525 Oct 11 06:18 agis_schedconf.cvmfs.json
2025-10-11 04:46:13 (38044): Guest Log: -rw-------. 1 atlas atlas   1560580 Oct 11 06:18 agis_ddmendpoints.agis.ALL.json
2025-10-11 04:46:13 (38044): Guest Log: drwx------. 5 atlas atlas      4096 Oct 11 06:18 pilot3
2025-10-11 04:46:13 (38044): Guest Log: -rw-------. 1 atlas atlas 194964184 Oct 11 08:44 HITS.46676269._047533.pool.root.1
2025-10-11 04:46:13 (38044): Guest Log: -rw-------. 1 atlas atlas      1037 Oct 11 08:44 memory_monitor_summary.json
2025-10-11 04:46:13 (38044): Guest Log: -rw-------. 1 atlas atlas    315050 Oct 11 08:44 log.46676269._047533.job.log.tgz.1
2025-10-11 04:46:13 (38044): Guest Log: -rw-------. 1 atlas atlas      7779 Oct 11 08:44 heartbeat.json
2025-10-11 04:46:13 (38044): Guest Log: -rw-------. 1 atlas atlas        95 Oct 11 08:45 pilot_heartbeat.json
2025-10-11 04:46:13 (38044): Guest Log: -rw-------. 1 atlas atlas      4991 Oct 11 08:45 pilotlog.txt
2025-10-11 04:46:13 (38044): Guest Log: -rw-------. 1 atlas atlas   1216285 Oct 11 08:45 log.46676269._047533.job.log.1
2025-10-11 04:46:13 (38044): Guest Log: -rw-------. 1 atlas atlas       357 Oct 11 08:45 output.list
2025-10-11 04:46:13 (38044): Guest Log: -rw-r--r--. 1 atlas atlas       620 Oct 11 08:45 runtime_log
2025-10-11 04:46:13 (38044): Guest Log: -rw-------. 1 atlas atlas   1546240 Oct 11 08:45 result.tar.gz
2025-10-11 04:46:13 (38044): Guest Log: -rw-------. 1 atlas atlas       652 Oct 11 08:45 ZodLDmgQcR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmOpeNDmFkADdm.diag
2025-10-11 04:46:13 (38044): Guest Log: -rw-r--r--. 1 atlas atlas      8636 Oct 11 08:45 runtime_log.err
2025-10-11 04:46:13 (38044): Guest Log: Looking for outputfile HITS.46676269._047533.pool.root.1
2025-10-11 04:46:13 (38044): Guest Log: HITS file was successfully produced
2025-10-11 04:46:13 (38044): Guest Log: -rw-------. 1 atlas atlas 194964184 Oct 11 08:44 /home/atlas/RunAtlas/HITS.46676269._047533.pool.root.1
2025-10-11 04:46:13 (38044): Guest Log: Successfully finished the ATLAS job!
2025-10-11 04:46:13 (38044): Guest Log: Copying the results back to the shared directory!
2025-10-11 04:46:13 (38044): Guest Log:  *** Contents of shared directory: ***
2025-10-11 04:46:13 (38044): Guest Log: total 408048
2025-10-11 04:46:13 (38044): Guest Log: -rwxrwxrwx. 1 root root 220723472 Oct 11 06:17 ATLAS.root_0
2025-10-11 04:46:13 (38044): Guest Log: -rwxrwxrwx. 1 root root 194964184 Oct 11  2025 HITS.pool.root.1
2025-10-11 04:46:13 (38044): Guest Log: -rwxrwxrwx. 1 root root      9027 Oct 11 06:17 init_data.xml
2025-10-11 04:46:13 (38044): Guest Log: -rwxrwxrwx. 1 root root    569680 Oct 11 05:26 input.tar.gz
2025-10-11 04:46:13 (38044): Guest Log: -rwxrwxrwx. 1 root root   1546240 Oct 11  2025 result.tar.gz
2025-10-11 04:46:13 (38044): Guest Log: -rwxrwxrwx. 1 root root     15120 Oct 11 05:27 start_atlas.sh
2025-10-11 04:46:13 (38044): Guest Log:  *** Success! Shutting down the machine. ***
2025-10-11 04:46:13 (38044): VM Completion File Detected.
2025-10-11 04:46:13 (38044): Powering off VM.
2025-10-11 04:46:14 (38044): Successfully stopped VM.
2025-10-11 04:46:14 (38044): Deregistering VM. (boinc_7c7dff64bf131200, slot#0)
2025-10-11 04:46:14 (38044): Removing network bandwidth throttle group from VM.
2025-10-11 04:46:14 (38044): Removing VM from VirtualBox.
2025-10-11 04:46:19 (38044): called boinc_finish(0)

</stderr_txt>
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