Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
17:23:34 (2428017): wrapper (7.7.26015): starting
17:23:34 (2428017): wrapper: running run_atlas (--nthreads 3)
[2025-10-11 17:23:34] Arguments: --nthreads 3
[2025-10-11 17:23:34] Threads: 3
[2025-10-11 17:23:34] Checking for CVMFS
[2025-10-11 17:23:34] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 17:23:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 17:23:34] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 17:23:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 17:23:35] 2.9.2.0 1544458 3113 70632 151589 1 56 30542710 36864000 0 130560 0 2309839 99.990 105327 1169 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-11 17:23:35] CVMFS is ok
[2025-10-11 17:23:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 17:23:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 17:23:35] Further information can be found at the LHC@home message board.
[2025-10-11 17:23:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 17:23:35] Checking for apptainer binary...
[2025-10-11 17:23:35] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 17:23:35] Running /usr/bin/apptainer --version
[2025-10-11 17:23:35] apptainer version 1.4.1-1.1
[2025-10-11 17:23:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 17:23:35] atlasA223a
[2025-10-11 17:23:35] apptainer works
[2025-10-11 17:23:35] Set ATHENA_PROC_NUMBER=3
[2025-10-11 17:23:35] Set ATHENA_CORE_NUMBER=3
[2025-10-11 17:23:35] Starting ATLAS job with PandaID=6837875700
[2025-10-11 17:23:35] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-11 18:55:00]  *** The last 200 lines of the pilot log: ***
[2025-10-11 18:55:00] 2025-10-11 16:54:26,768 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-11 18:55:00] 2025-10-11 16:54:26,768 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-11 18:55:00] 2025-10-11 16:54:26,768 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-11 18:55:00] 2025-10-11 16:54:26,768 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-11 18:55:00] 2025-10-11 16:54:26,768 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-11 18:55:00] 2025-10-11 16:54:26,768 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-11 18:55:00] 2025-10-11 16:54:26,769 | INFO     | job 6837875700 has completed (purged errors)
[2025-10-11 18:55:00] 2025-10-11 16:54:26,769 | INFO     | overall cleanup function is called
[2025-10-11 18:55:00] 2025-10-11 16:54:27,775 | INFO     | --- collectZombieJob: --- 10, [2438202]
[2025-10-11 18:55:00] 2025-10-11 16:54:27,775 | INFO     | zombie collector waiting for pid 2438202
[2025-10-11 18:55:00] 2025-10-11 16:54:27,776 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-11 18:55:00] 2025-10-11 16:54:27,776 | INFO     | collected zombie processes
[2025-10-11 18:55:00] 2025-10-11 16:54:27,776 | INFO     | will attempt to kill all subprocesses of pid=2438202
[2025-10-11 18:55:00] 2025-10-11 16:54:27,816 | INFO     | process IDs to be killed: [2438202] (in reverse order)
[2025-10-11 18:55:00] 2025-10-11 16:54:27,842 | WARNING  | found no corresponding commands to process id(s)
[2025-10-11 18:55:00] 2025-10-11 16:54:27,842 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-11 18:55:00] 2025-10-11 16:54:27,843 | INFO     | did not find any defunct processes belonging to 2438202
[2025-10-11 18:55:00] 2025-10-11 16:54:27,844 | INFO     | did not find any defunct processes belonging to 2438202
[2025-10-11 18:55:00] 2025-10-11 16:54:27,844 | INFO     | ready for new job
[2025-10-11 18:55:00] 2025-10-11 16:54:27,844 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-11 18:55:00] 2025-10-11 16:54:27,845 | INFO     | ***************************************
[2025-10-11 18:55:00] 2025-10-11 16:54:27,845 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-11 18:55:00] 2025-10-11 16:54:27,845 | INFO     | ***************************************
[2025-10-11 18:55:00] 2025-10-11 16:54:27,845 | INFO     | 
[2025-10-11 18:55:00] 2025-10-11 16:54:27,846 | INFO     | architecture information:
[2025-10-11 18:55:00] 2025-10-11 16:54:27,846 | INFO     | executing command: cat /etc/os-release
[2025-10-11 18:55:00] 2025-10-11 16:54:27,855 | INFO     | cat /etc/os-release:
[2025-10-11 18:55:00] NAME="CentOS Linux"
[2025-10-11 18:55:00] VERSION="7 (Core)"
[2025-10-11 18:55:00] ID="centos"
[2025-10-11 18:55:00] ID_LIKE="rhel fedora"
[2025-10-11 18:55:00] VERSION_ID="7"
[2025-10-11 18:55:00] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-11 18:55:00] ANSI_COLOR="0;31"
[2025-10-11 18:55:00] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-11 18:55:00] HOME_URL="https://www.centos.org/"
[2025-10-11 18:55:00] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-11 18:55:00] 
[2025-10-11 18:55:00] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-11 18:55:00] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-11 18:55:00] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-11 18:55:00] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-11 18:55:00] 
[2025-10-11 18:55:00] 2025-10-11 16:54:27,855 | INFO     | ***************************************
[2025-10-11 18:55:00] 2025-10-11 16:54:28,359 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-11 18:55:00] 2025-10-11 16:54:28,372 | INFO     | sufficient remaining disk space (329479356416 B)
[2025-10-11 18:55:00] 2025-10-11 16:54:28,372 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-11 18:55:00] 2025-10-11 16:54:28,372 | INFO     | current server update state: UPDATING_FINAL
[2025-10-11 18:55:00] 2025-10-11 16:54:28,372 | INFO     | update_server=False
[2025-10-11 18:55:00] 2025-10-11 16:54:28,372 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-11 18:55:00] 2025-10-11 16:54:28,372 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-11 18:55:00] 2025-10-11 16:54:28,372 | INFO     | aborting loop
[2025-10-11 18:55:00] 2025-10-11 16:54:28,372 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-11 18:55:00] 2025-10-11 16:54:28,373 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-11 18:55:00] 2025-10-11 16:54:29,271 | INFO     | all data control threads have been joined
[2025-10-11 18:55:00] 2025-10-11 16:54:29,378 | INFO     | [job] job monitor thread has finished
[2025-10-11 18:55:00] 2025-10-11 16:54:29,379 | INFO     | [job] retrieve thread has finished
[2025-10-11 18:55:00] 2025-10-11 16:54:29,380 | INFO     | [job] queue monitor thread has finished
[2025-10-11 18:55:00] 2025-10-11 16:54:29,427 | INFO     | [payload] validate_pre thread has finished
[2025-10-11 18:55:00] 2025-10-11 16:54:29,679 | INFO     | all job control threads have been joined
[2025-10-11 18:55:00] 2025-10-11 16:54:29,875 | INFO     | all payload control threads have been joined
[2025-10-11 18:55:00] 2025-10-11 16:54:30,260 | INFO     | [payload] validate_post thread has finished
[2025-10-11 18:55:00] 2025-10-11 16:54:30,277 | INFO     | [data] control thread has finished
[2025-10-11 18:55:00] 2025-10-11 16:54:30,379 | INFO     | [data] copytool_out thread has finished
[2025-10-11 18:55:00] 2025-10-11 16:54:30,418 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-11 18:55:00] 2025-10-11 16:54:30,489 | INFO     | [data] copytool_in thread has finished
[2025-10-11 18:55:00] 2025-10-11 16:54:30,492 | INFO     | [job] validate thread has finished
[2025-10-11 18:55:00] 2025-10-11 16:54:30,511 | INFO     | [payload] failed_post thread has finished
[2025-10-11 18:55:00] 2025-10-11 16:54:30,635 | INFO     | [payload] execute_payloads thread has finished
[2025-10-11 18:55:00] 2025-10-11 16:54:30,685 | INFO     | [job] control thread has finished
[2025-10-11 18:55:00] 2025-10-11 16:54:30,769 | INFO     | [job] create_data_payload thread has finished
[2025-10-11 18:55:00] 2025-10-11 16:54:30,881 | INFO     | [payload] control thread has finished
[2025-10-11 18:55:00] 2025-10-11 16:54:34,426 | INFO     | [data] queue_monitor thread has finished
[2025-10-11 18:55:00] 2025-10-11 16:54:38,534 | INFO     | job.realtimelogging is not enabled
[2025-10-11 18:55:00] 2025-10-11 16:54:39,540 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-11 18:55:00] 2025-10-11 16:54:54,500 | INFO     | [monitor] cgroup control has ended
[2025-10-11 18:55:00] 2025-10-11 16:54:55,057 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139909427545920)>', '<ExcThread(monitor, started 139909071357696)>']
[2025-10-11 18:55:00] 2025-10-11 16:54:58,517 | INFO     | PID=2431749 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-11 18:55:00] 2025-10-11 16:54:58,517 | INFO     | found 0 job(s) in 20 queues
[2025-10-11 18:55:00] 2025-10-11 16:54:58,517 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-11 18:55:00] 2025-10-11 16:54:58,517 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-11 18:55:00] 2025-10-11 16:54:58,517 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-11 18:55:00] 2025-10-11 16:54:58,517 | INFO     | [monitor] control thread has ended
[2025-10-11 18:55:00] 2025-10-11 16:55:00,060 | INFO     | all workflow threads have been joined
[2025-10-11 18:55:00] 2025-10-11 16:55:00,060 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-11 18:55:00] 2025-10-11 16:55:00,061 | INFO     | traces error code: 0
[2025-10-11 18:55:00] 2025-10-11 16:55:00,061 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-11 18:55:00] 2025-10-11 16:55:00,108 [wrapper] ==== pilot stdout END ====
[2025-10-11 18:55:00] 2025-10-11 16:55:00,111 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-11 18:55:00] 2025-10-11 16:55:00,114 [wrapper] pilotpid: 2431749
[2025-10-11 18:55:00] 2025-10-11 16:55:00,116 [wrapper] Pilot exit status: 0
[2025-10-11 18:55:00] 2025-10-11 16:55:00,125 [wrapper] pandaids: 6837875700
[2025-10-11 18:55:00] 2025-10-11 16:55:00,141 [wrapper] cleanup supervisor_pilot 2450625 2431750
[2025-10-11 18:55:00] 2025-10-11 16:55:00,143 [wrapper] Test setup, not cleaning
[2025-10-11 18:55:00] 2025-10-11 16:55:00,146 [wrapper] apfmon messages muted
[2025-10-11 18:55:00] 2025-10-11 16:55:00,148 [wrapper] ==== wrapper stdout END ====
[2025-10-11 18:55:00] 2025-10-11 16:55:00,151 [wrapper] ==== wrapper stderr END ====
[2025-10-11 18:55:00]  *** Error codes and diagnostics ***
[2025-10-11 18:55:00]     "exeErrorCode": 0,
[2025-10-11 18:55:00]     "exeErrorDiag": "",
[2025-10-11 18:55:00]     "pilotErrorCode": 0,
[2025-10-11 18:55:00]     "pilotErrorDiag": "",
[2025-10-11 18:55:00]  *** Listing of results directory ***
[2025-10-11 18:55:00] total 407112
[2025-10-11 18:55:00] -rw-r--r-- 1 boinc boinc    557409 Oct 11 02:15 pilot3.tar.gz
[2025-10-11 18:55:00] -rwx------ 1 boinc boinc     36292 Oct 11 02:20 runpilot2-wrapper.sh
[2025-10-11 18:55:00] -rw-r--r-- 1 boinc boinc      5112 Oct 11 02:20 queuedata.json
[2025-10-11 18:55:00] -rw-r--r-- 1 boinc boinc       100 Oct 11 17:23 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-11 18:55:00] -rwxr-xr-x 1 boinc boinc      7986 Oct 11 17:23 run_atlas
[2025-10-11 18:55:00] -rw-r--r-- 1 boinc boinc       105 Oct 11 17:23 job.xml
[2025-10-11 18:55:00] -rw-r--r-- 2 boinc boinc 219007916 Oct 11 17:23 EVNT.46676267._001924.pool.root.1
[2025-10-11 18:55:00] -rw-r--r-- 2 boinc boinc    569676 Oct 11 17:23 input.tar.gz
[2025-10-11 18:55:00] -rw-r--r-- 2 boinc boinc     15120 Oct 11 17:23 start_atlas.sh
[2025-10-11 18:55:00] drwxrwx--x 2 boinc boinc      4096 Oct 11 17:23 shared
[2025-10-11 18:55:00] -rw-r--r-- 1 boinc boinc         0 Oct 11 17:23 boinc_setup_complete
[2025-10-11 18:55:00] -rw-r--r-- 1 boinc boinc      6200 Oct 11 17:23 init_data.xml
[2025-10-11 18:55:00] -rw-r--r-- 1 boinc boinc         0 Oct 11 17:23 boinc_lockfile
[2025-10-11 18:55:00] -rw-r--r-- 1 boinc boinc      2549 Oct 11 17:23 pandaJob.out
[2025-10-11 18:55:00] -rw------- 1 boinc boinc    975512 Oct 11 17:23 agis_schedconf.cvmfs.json
[2025-10-11 18:55:00] -rw------- 1 boinc boinc   1560580 Oct 11 17:23 agis_ddmendpoints.agis.ALL.json
[2025-10-11 18:55:00] drwx------ 5 boinc boinc      4096 Oct 11 17:23 pilot3
[2025-10-11 18:55:00] -rw------- 1 boinc boinc 191866012 Oct 11 18:53 HITS.46676269._047654.pool.root.1
[2025-10-11 18:55:00] -rw-r--r-- 1 boinc boinc       529 Oct 11 18:54 boinc_task_state.xml
[2025-10-11 18:55:00] -rw------- 1 boinc boinc      1018 Oct 11 18:54 memory_monitor_summary.json
[2025-10-11 18:55:00] -rw------- 1 boinc boinc    265475 Oct 11 18:54 log.46676269._047654.job.log.tgz.1
[2025-10-11 18:55:00] -rw------- 1 boinc boinc        95 Oct 11 18:54 pilot_heartbeat.json
[2025-10-11 18:55:00] -rw------- 1 boinc boinc      7768 Oct 11 18:54 heartbeat.json
[2025-10-11 18:55:00] -rw-r--r-- 1 boinc boinc      8192 Oct 11 18:54 boinc_mmap_file
[2025-10-11 18:55:00] -rw-r--r-- 1 boinc boinc        27 Oct 11 18:54 wrapper_checkpoint.txt
[2025-10-11 18:55:00] -rw------- 1 boinc boinc      4824 Oct 11 18:55 pilotlog.txt
[2025-10-11 18:55:00] -rw------- 1 boinc boinc    793982 Oct 11 18:55 log.46676269._047654.job.log.1
[2025-10-11 18:55:00] -rw------- 1 boinc boinc       357 Oct 11 18:55 output.list
[2025-10-11 18:55:00] -rw-r--r-- 1 boinc boinc       620 Oct 11 18:55 runtime_log
[2025-10-11 18:55:00] -rw------- 1 boinc boinc   1075200 Oct 11 18:55 result.tar.gz
[2025-10-11 18:55:00] -rw-r--r-- 1 boinc boinc      8797 Oct 11 18:55 runtime_log.err
[2025-10-11 18:55:00] -rw------- 1 boinc boinc       662 Oct 11 18:55 VPdLDmhWcR8n9Rq4apOajLDm4fhM0noT9bVof3QYDm3pQMDmhrC3En.diag
[2025-10-11 18:55:00] -rw-r--r-- 1 boinc boinc     11516 Oct 11 18:55 stderr.txt
[2025-10-11 18:55:00] HITS file was successfully produced:
[2025-10-11 18:55:00] -rw------- 1 boinc boinc 191866012 Oct 11 18:53 shared/HITS.pool.root.1
[2025-10-11 18:55:00]  *** Contents of shared directory: ***
[2025-10-11 18:55:00] total 402884
[2025-10-11 18:55:00] -rw-r--r-- 2 boinc boinc 219007916 Oct 11 17:23 ATLAS.root_0
[2025-10-11 18:55:00] -rw-r--r-- 2 boinc boinc    569676 Oct 11 17:23 input.tar.gz
[2025-10-11 18:55:00] -rw-r--r-- 2 boinc boinc     15120 Oct 11 17:23 start_atlas.sh
[2025-10-11 18:55:00] -rw------- 1 boinc boinc 191866012 Oct 11 18:53 HITS.pool.root.1
[2025-10-11 18:55:00] -rw------- 1 boinc boinc   1075200 Oct 11 18:55 result.tar.gz
18:55:01 (2428017): run_atlas exited; CPU time 15580.782318
18:55:01 (2428017): called boinc_finish(0)

</stderr_txt>
]]>

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