Stderr output

<core_client_version>7.16.11</core_client_version>
<![CDATA[
<stderr_txt>
2025-10-11 09:50:38 (22592): vboxwrapper version 26210
2025-10-11 09:50:38 (22592): BOINC client version: 7.16.11
2025-10-11 09:50:38 (22592): Detected: VirtualBox VboxManage Interface (Version: 6.1.12)
2025-10-11 09:50:39 (22592): Successfully copied 'init_data.xml' to the shared directory.
2025-10-11 09:50:39 (22592): Create VM. (boinc_68e8ff031c1af259, slot#3)
2025-10-11 09:50:39 (22592): Setting Memory Size for VM. (4700MB)
2025-10-11 09:50:40 (22592): Setting CPU Count for VM. (7)
2025-10-11 09:50:40 (22592): Setting Chipset Options for VM.
2025-10-11 09:50:40 (22592): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-10-11 09:50:40 (22592): Setting Boot Options for VM.
2025-10-11 09:50:41 (22592): Setting Network Configuration for NAT. (Driver: virtio)
2025-10-11 09:50:41 (22592): Enabling VM Network Access.
2025-10-11 09:50:41 (22592): Disabling USB Support for VM.
2025-10-11 09:50:42 (22592): Disabling COM Port Support for VM.
2025-10-11 09:50:42 (22592): Disabling LPT Port Support for VM.
2025-10-11 09:50:42 (22592): Disabling Audio Support for VM.
2025-10-11 09:50:43 (22592): Disabling Clipboard Support for VM.
2025-10-11 09:50:43 (22592): Disabling Drag and Drop Support for VM.
2025-10-11 09:50:43 (22592): Adding storage controller(s) to VM.
2025-10-11 09:50:43 (22592): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-10-11 09:50:44 (22592): Adding VirtualBox Guest Additions to VM.
2025-10-11 09:50:45 (22592): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-10-11 09:50:45 (22592): forwarding host port 60191 to guest port 80
2025-10-11 09:50:45 (22592): Enabling remote desktop for VM.
2025-10-11 09:50:45 (22592): Required extension pack not installed, remote desktop not enabled.
2025-10-11 09:50:45 (22592): Enabling shared directory for VM.
2025-10-11 09:50:46 (22592): Starting VM using VBoxManage interface. (boinc_68e8ff031c1af259, slot#3)
2025-10-11 09:50:50 (22592): Successfully started VM. (PID = '8440')
2025-10-11 09:50:50 (22592): Reporting VM Process ID to BOINC.
2025-10-11 09:50:50 (22592): Guest Log: BIOS: VirtualBox 6.1.12
2025-10-11 09:50:50 (22592): Guest Log: CPUID EDX: 0x178bfbff
2025-10-11 09:50:50 (22592): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-10-11 09:50:50 (22592): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-10-11 09:50:50 (22592): VM state change detected. (old = 'poweredoff', new = 'running')
2025-10-11 09:50:50 (22592): Detected: Web Application Enabled (http://localhost:60191)
2025-10-11 09:50:50 (22592): Preference change detected
2025-10-11 09:50:50 (22592): Setting CPU throttle for VM. (40%)
2025-10-11 09:50:50 (22592): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-10-11 09:50:52 (22592): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-10-11 09:50:52 (22592): Guest Log: BIOS: Booting from Hard Disk...
2025-10-11 09:50:59 (22592): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-10-11 09:50:59 (22592): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-10-11 09:50:59 (22592): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-10-11 09:50:59 (22592): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-10-11 09:50:59 (22592): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-10-11 09:50:59 (22592): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-10-11 09:50:59 (22592): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-10-11 09:50:59 (22592): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-10-11 09:50:59 (22592): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-10-11 09:50:59 (22592): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-10-11 09:50:59 (22592): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-10-11 09:50:59 (22592): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-10-11 09:50:59 (22592): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-10-11 09:50:59 (22592): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-10-11 09:50:59 (22592): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-10-11 09:50:59 (22592): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-10-11 09:50:59 (22592): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-10-11 09:50:59 (22592): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-10-11 09:50:59 (22592): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-10-11 09:50:59 (22592): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-10-11 09:50:59 (22592): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-10-11 09:50:59 (22592): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-10-11 09:50:59 (22592): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-10-11 09:50:59 (22592): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-10-11 09:50:59 (22592): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-10-11 09:50:59 (22592): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-10-11 09:50:59 (22592): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-10-11 09:50:59 (22592): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-10-11 09:50:59 (22592): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-10-11 09:50:59 (22592): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-10-11 09:50:59 (22592): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-10-11 09:50:59 (22592): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-10-11 09:51:10 (22592): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-10-11 09:51:10 (22592): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0000000 (size 0x400000)
2025-10-11 09:51:20 (22592): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-10-11 09:51:20 (22592): Guest Log: 00:00:00.000116 main     Log opened 2025-10-11T09:51:18.084546000Z
2025-10-11 09:51:20 (22592): Guest Log: 00:00:00.000191 main     OS Product: Linux
2025-10-11 09:51:20 (22592): Guest Log: 00:00:00.000221 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-10-11 09:51:20 (22592): Guest Log: 00:00:00.000245 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-10-11 09:51:20 (22592): Guest Log: 00:00:00.000270 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-10-11 09:51:20 (22592): Guest Log: 00:00:00.000271 main     Process ID: 1351
2025-10-11 09:51:20 (22592): Guest Log: 00:00:00.000271 main     Package type: LINUX_64BITS_GENERIC
2025-10-11 09:51:20 (22592): Guest Log: 00:00:00.001379 main     5.2.32 r132073 started. Verbose level = 0
2025-10-11 09:51:20 (22592): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-10-11 09:51:20 (22592): Guest Log: [INFO] Mounting shared directory
2025-10-11 09:51:20 (22592): Guest Log: [INFO] Checking for init_data.xml
2025-10-11 09:51:28 (22592): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-10-11 09:51:28 (22592): Guest Log: [INFO] Detected branch: prod
2025-10-11 09:51:28 (22592): Guest Log: This is the prod version of the ATLAS job wrapper
2025-10-11 09:51:28 (22592): Guest Log: Copying input files
2025-10-11 09:51:30 (22592): Guest Log: 00:00:10.004171 timesync vgsvcTimeSyncWorker: Radical guest time change: -3 587 909 893 000ns (GuestNow=1 760 172 690 177 834 000 ns GuestLast=1 760 176 278 087 727 000 ns fSetTimeLastLoop=true )
2025-10-11 09:51:32 (22592): Guest Log: Copied input files into RunAtlas.
2025-10-11 09:51:33 (22592): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-10-11 09:51:33 (22592): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-10-11 09:51:33 (22592): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-10-11 09:51:33 (22592): Guest Log: Further information can be found at the LHC@home message board.
2025-10-11 09:51:43 (22592): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-10-11 09:51:43 (22592): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-10-11 09:51:43 (22592): Guest Log: 2.6.3.0 1630 0 30164 151577 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-10-11 09:51:45 (22592): Guest Log: copied the webapp to /var/www
2025-10-11 09:51:45 (22592): Guest Log: ATHENA_PROC_NUMBER=7
2025-10-11 09:51:45 (22592): Guest Log: ATHENA_CORE_NUMBER=7
2025-10-11 09:51:45 (22592): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-10-11 09:51:45 (22592): Guest Log:  *** Starting ATLAS job. (PandaID=6837874378 taskID=46676269) ***
2025-10-11 11:30:54 (22592): Status Report: Elapsed Time: '6000.000000'
2025-10-11 11:30:54 (22592): Status Report: CPU Time: '15850.875000'
2025-10-11 13:10:58 (22592): Status Report: Elapsed Time: '12000.000000'
2025-10-11 13:10:58 (22592): Status Report: CPU Time: '34554.312500'
2025-10-11 14:10:48 (22592): Guest Log:  *** Job finished ***
2025-10-11 14:10:48 (22592): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-10-11 14:10:48 (22592): Guest Log: 2025-10-11 13:10:40,760 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-10-11 14:10:48 (22592): Guest Log: 2025-10-11 13:10:40,760 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-10-11 14:10:48 (22592): Guest Log: 2025-10-11 13:10:41,795 | INFO     | [monitor] cgroup control has ended
2025-10-11 14:10:48 (22592): Guest Log: 2025-10-11 13:10:41,928 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139854658680640)>', '<ExcThread(monitor, started 139853329069824)>']
2025-10-11 14:10:48 (22592): Guest Log: 2025-10-11 13:10:42,763 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-10-11 14:10:48 (22592): Guest Log: 2025-10-11 13:10:42,763 | INFO     | [monitor] control thread has ended
2025-10-11 14:10:48 (22592): Guest Log: 2025-10-11 13:10:46,934 | INFO     | all workflow threads have been joined
2025-10-11 14:10:48 (22592): Guest Log: 2025-10-11 13:10:46,934 | INFO     | end of generic workflow (traces error code: 0)
2025-10-11 14:10:48 (22592): Guest Log: 2025-10-11 13:10:46,934 | INFO     | traces error code: 0
2025-10-11 14:10:48 (22592): Guest Log: 2025-10-11 13:10:46,934 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-10-11 14:10:48 (22592): Guest Log: 2025-10-11 13:10:47,149 [wrapper] ==== pilot stdout END ====
2025-10-11 14:10:48 (22592): Guest Log: 2025-10-11 13:10:47,154 [wrapper] ==== wrapper stdout RESUME ====
2025-10-11 14:10:48 (22592): Guest Log: 2025-10-11 13:10:47,159 [wrapper] pilotpid: 6042
2025-10-11 14:10:48 (22592): Guest Log: 2025-10-11 13:10:47,164 [wrapper] Pilot exit status: 0
2025-10-11 14:10:48 (22592): Guest Log: 2025-10-11 13:10:47,231 [wrapper] pandaids: 6837874378
2025-10-11 14:10:48 (22592): Guest Log: 2025-10-11 13:10:47,263 [wrapper] cleanup supervisor_pilot 10350 6043
2025-10-11 14:10:48 (22592): Guest Log: 2025-10-11 13:10:47,270 [wrapper] Test setup, not cleaning
2025-10-11 14:10:48 (22592): Guest Log: 2025-10-11 13:10:47,275 [wrapper] apfmon messages muted
2025-10-11 14:10:48 (22592): Guest Log: 2025-10-11 13:10:47,280 [wrapper] ==== wrapper stdout END ====
2025-10-11 14:10:48 (22592): Guest Log: 2025-10-11 13:10:47,285 [wrapper] ==== wrapper stderr END ====
2025-10-11 14:10:48 (22592): Guest Log:  *** Error codes and diagnostics ***
2025-10-11 14:10:48 (22592): Guest Log:     "exeErrorCode": 0,
2025-10-11 14:10:48 (22592): Guest Log:     "exeErrorDiag": "",
2025-10-11 14:10:48 (22592): Guest Log:     "pilotErrorCode": 0,
2025-10-11 14:10:48 (22592): Guest Log:     "pilotErrorDiag": "",
2025-10-11 14:10:48 (22592): Guest Log:  *** Listing of results directory ***
2025-10-11 14:10:48 (22592): Guest Log: total 195388
2025-10-11 14:10:48 (22592): Guest Log: -rw-r--r--. 1 atlas atlas    557409 Oct 10 22:56 pilot3.tar.gz
2025-10-11 14:10:48 (22592): Guest Log: -rwx------. 1 atlas atlas     36292 Oct 10 23:18 runpilot2-wrapper.sh
2025-10-11 14:10:48 (22592): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Oct 10 23:18 queuedata.json
2025-10-11 14:10:48 (22592): Guest Log: -rwxr-xr-x. 1 atlas atlas     12652 Oct 11 08:51 init_data.xml
2025-10-11 14:10:48 (22592): Guest Log: -rwxr-xr-x. 1 atlas atlas    569680 Oct 11 08:51 input.tar.gz
2025-10-11 14:10:48 (22592): Guest Log: -rwxr-xr-x. 1 atlas atlas     15120 Oct 11 08:51 start_atlas.sh
2025-10-11 14:10:48 (22592): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Oct 11 08:51 EVNT.46676267._001894.pool.root.1 -> /data/./ATLAS.root_0
2025-10-11 14:10:48 (22592): Guest Log: -rw-r--r--. 1 atlas atlas      2550 Oct 11 08:51 pandaJob.out
2025-10-11 14:10:48 (22592): Guest Log: -rw-------. 1 atlas atlas    975509 Oct 11 08:53 agis_schedconf.cvmfs.json
2025-10-11 14:10:48 (22592): Guest Log: drwx------. 5 atlas atlas      4096 Oct 11 08:53 pilot3
2025-10-11 14:10:48 (22592): Guest Log: -rw-------. 1 atlas atlas 192223207 Oct 11 13:08 HITS.46676269._046900.pool.root.1
2025-10-11 14:10:48 (22592): Guest Log: -rw-------. 1 atlas atlas      1044 Oct 11 13:09 memory_monitor_summary.json
2025-10-11 14:10:48 (22592): Guest Log: -rw-------. 1 atlas atlas   1560580 Oct 11 13:09 agis_ddmendpoints.agis.ALL.json
2025-10-11 14:10:48 (22592): Guest Log: -rw-------. 1 atlas atlas    419061 Oct 11 13:09 log.46676269._046900.job.log.tgz.1
2025-10-11 14:10:48 (22592): Guest Log: -rw-------. 1 atlas atlas      7825 Oct 11 13:10 heartbeat.json
2025-10-11 14:10:48 (22592): Guest Log: -rw-------. 1 atlas atlas        95 Oct 11 13:10 pilot_heartbeat.json
2025-10-11 14:10:48 (22592): Guest Log: -rw-------. 1 atlas atlas      4805 Oct 11 13:10 pilotlog.txt
2025-10-11 14:10:48 (22592): Guest Log: -rw-------. 1 atlas atlas   1588791 Oct 11 13:10 log.46676269._046900.job.log.1
2025-10-11 14:10:48 (22592): Guest Log: -rw-------. 1 atlas atlas       357 Oct 11 13:10 output.list
2025-10-11 14:10:48 (22592): Guest Log: -rw-r--r--. 1 atlas atlas       620 Oct 11 13:10 runtime_log
2025-10-11 14:10:48 (22592): Guest Log: -rw-------. 1 atlas atlas   2027520 Oct 11 13:10 result.tar.gz
2025-10-11 14:10:48 (22592): Guest Log: -rw-r--r--. 1 atlas atlas      8625 Oct 11 13:10 runtime_log.err
2025-10-11 14:10:48 (22592): Guest Log: -rw-------. 1 atlas atlas       654 Oct 11 13:10 BUELDmhYbR8n9Rq4apOajLDm4fhM0noT9bVof3QYDm5mQMDmnFylVn.diag
2025-10-11 14:10:48 (22592): Guest Log: Looking for outputfile HITS.46676269._046900.pool.root.1
2025-10-11 14:10:48 (22592): Guest Log: HITS file was successfully produced
2025-10-11 14:10:48 (22592): Guest Log: -rw-------. 1 atlas atlas 192223207 Oct 11 13:08 /home/atlas/RunAtlas/HITS.46676269._046900.pool.root.1
2025-10-11 14:10:50 (22592): Guest Log: Successfully finished the ATLAS job!
2025-10-11 14:10:50 (22592): Guest Log: Copying the results back to the shared directory!
2025-10-11 14:10:50 (22592): Guest Log:  *** Contents of shared directory: ***
2025-10-11 14:10:50 (22592): Guest Log: total 407036
2025-10-11 14:10:50 (22592): Guest Log: -rwxrwxrwx. 1 root root 221945825 Oct 11 08:50 ATLAS.root_0
2025-10-11 14:10:50 (22592): Guest Log: -rwxrwxrwx. 1 root root 192223207 Oct 11 13:10 HITS.pool.root.1
2025-10-11 14:10:50 (22592): Guest Log: -rwxrwxrwx. 1 root root     12652 Oct 11 08:50 init_data.xml
2025-10-11 14:10:50 (22592): Guest Log: -rwxrwxrwx. 1 root root    569680 Oct 11 05:11 input.tar.gz
2025-10-11 14:10:50 (22592): Guest Log: -rwxrwxrwx. 1 root root   2027520 Oct 11 13:10 result.tar.gz
2025-10-11 14:10:50 (22592): Guest Log: -rwxrwxrwx. 1 root root     15120 Oct 11 05:11 start_atlas.sh
2025-10-11 14:10:50 (22592): Guest Log:  *** Success! Shutting down the machine. ***
2025-10-11 14:10:50 (22592): VM Completion File Detected.
2025-10-11 14:10:50 (22592): Powering off VM.
2025-10-11 14:10:51 (22592): Successfully stopped VM.
2025-10-11 14:10:51 (22592): Deregistering VM. (boinc_68e8ff031c1af259, slot#3)
2025-10-11 14:10:51 (22592): Removing network bandwidth throttle group from VM.
2025-10-11 14:10:52 (22592): Removing VM from VirtualBox.
2025-10-11 14:10:57 (22592): called boinc_finish(0)

</stderr_txt>
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