Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
22:17:33 (3352280): wrapper (7.7.26015): starting
22:17:33 (3352280): wrapper: running run_atlas (--nthreads 12)
[2025-10-11 22:17:33] Arguments: --nthreads 12
[2025-10-11 22:17:33] Threads: 12
[2025-10-11 22:17:33] Checking for CVMFS
[2025-10-11 22:17:34] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 22:17:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 22:17:34] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 22:17:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 22:17:36] 2.13.2.0 3821245 128651 295980 151604 1 70 14666598 21042177 28941 16776704 0 80905447 99.359 138548903 30927 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-11 22:17:36] CVMFS is ok
[2025-10-11 22:17:36] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 22:17:36] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 22:17:36] Further information can be found at the LHC@home message board.
[2025-10-11 22:17:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 22:17:36] Checking for apptainer binary...
[2025-10-11 22:17:36] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 22:17:36] Running /usr/bin/apptainer --version
[2025-10-11 22:17:36] apptainer version 1.4.2-1.el9
[2025-10-11 22:17:36] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 22:17:37] c-6-1.aglt2.org
[2025-10-11 22:17:37] apptainer works
[2025-10-11 22:17:37] Set ATHENA_PROC_NUMBER=12
[2025-10-11 22:17:37] Set ATHENA_CORE_NUMBER=12
[2025-10-11 22:17:37] Starting ATLAS job with PandaID=6831880013
[2025-10-11 22:17:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
22:29:08 (3385217): wrapper (7.7.26015): starting
22:29:08 (3385217): wrapper: running run_atlas (--nthreads 12)
[2025-10-11 22:29:08] Arguments: --nthreads 12
[2025-10-11 22:29:08] Threads: 12
[2025-10-11 22:29:08] This job has been restarted, cleaning up previous attempt
[2025-10-11 22:29:08] Checking for CVMFS
[2025-10-11 22:29:09] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 22:29:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 22:29:09] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 22:29:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 22:29:10] 2.13.2.0 3821245 128663 298364 151604 2 248 14675192 21042177 28706 16776704 0 80949186 99.360 138548905 30927 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-11 22:29:10] CVMFS is ok
[2025-10-11 22:29:10] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 22:29:10] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 22:29:10] Further information can be found at the LHC@home message board.
[2025-10-11 22:29:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 22:29:10] Checking for apptainer binary...
[2025-10-11 22:29:10] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 22:29:10] Running /usr/bin/apptainer --version
[2025-10-11 22:29:11] apptainer version 1.4.2-1.el9
[2025-10-11 22:29:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 22:29:12] c-6-1.aglt2.org
[2025-10-11 22:29:12] apptainer works
[2025-10-11 22:29:12] Set ATHENA_PROC_NUMBER=12
[2025-10-11 22:29:12] Set ATHENA_CORE_NUMBER=12
[2025-10-11 22:29:12] Starting ATLAS job with PandaID=6831880013
[2025-10-11 22:29:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 12:28:11]  *** The last 200 lines of the pilot log: ***
[2025-10-12 12:28:11] 2025-10-12 16:27:36,910 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 12:28:11] 2025-10-12 16:27:36,926 | INFO     | fitting pss+swap vs Time
[2025-10-12 12:28:11] 2025-10-12 16:27:36,927 | INFO     | sum of square deviations: 172212421383.14807
[2025-10-12 12:28:11] 2025-10-12 16:27:36,959 | INFO     | monitor loop #1371: job 0:6831880013 is in state 'finished'
[2025-10-12 12:28:11] 2025-10-12 16:27:36,959 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 12:28:11] 2025-10-12 16:27:36,978 | INFO     | sum of deviations: -610789988477.9393
[2025-10-12 12:28:11] 2025-10-12 16:27:36,978 | INFO     | mean x: 1760261380.5206814
[2025-10-12 12:28:11] 2025-10-12 16:27:36,979 | INFO     | mean y: 2230542.819951338
[2025-10-12 12:28:11] 2025-10-12 16:27:36,979 | INFO     | -- intersect: 6245392445.377103
[2025-10-12 12:28:11] 2025-10-12 16:27:36,979 | INFO     | intersect: 6245392445.377103
[2025-10-12 12:28:11] 2025-10-12 16:27:36,980 | INFO     | chi2: 5.7435566413115255
[2025-10-12 12:28:11] 2025-10-12 16:27:36,985 | INFO     | sum of square deviations: 169088981495.40753
[2025-10-12 12:28:11] 2025-10-12 16:27:37,002 | INFO     | sum of deviations: -454593543890.54065
[2025-10-12 12:28:11] 2025-10-12 16:27:37,002 | INFO     | mean x: 1760261228.0269277
[2025-10-12 12:28:11] 2025-10-12 16:27:37,002 | INFO     | mean y: 2238151.6609547124
[2025-10-12 12:28:11] 2025-10-12 16:27:37,002 | INFO     | -- intersect: 4734677739.060147
[2025-10-12 12:28:11] 2025-10-12 16:27:37,002 | INFO     | intersect: 4734677739.060147
[2025-10-12 12:28:11] 2025-10-12 16:27:37,003 | INFO     | chi2: 3.379094765112833
[2025-10-12 12:28:11] 2025-10-12 16:27:37,004 | INFO     | current chi2=3.379094765112833 (change=41.167207426699534 %)
[2025-10-12 12:28:11] 2025-10-12 16:27:37,005 | INFO     | sum of square deviations: 166003542320.10202
[2025-10-12 12:28:11] 2025-10-12 16:27:37,021 | INFO     | sum of deviations: -420145396390.659
[2025-10-12 12:28:11] 2025-10-12 16:27:37,021 | INFO     | mean x: 1760261075.5332513
[2025-10-12 12:28:11] 2025-10-12 16:27:37,022 | INFO     | mean y: 2239853.116995074
[2025-10-12 12:28:11] 2025-10-12 16:27:37,022 | INFO     | -- intersect: 4457359165.600537
[2025-10-12 12:28:11] 2025-10-12 16:27:37,022 | INFO     | intersect: 4457359165.600537
[2025-10-12 12:28:11] 2025-10-12 16:27:37,023 | INFO     | chi2: 3.3279969182378433
[2025-10-12 12:28:11] 2025-10-12 16:27:37,023 | INFO     | current chi2=3.3279969182378433 (change=1.5121756099457424 %)
[2025-10-12 12:28:11] 2025-10-12 16:27:37,023 | INFO     | right removable region: 811
[2025-10-12 12:28:11] 2025-10-12 16:27:37,025 | INFO     | sum of square deviations: 169088469705.40753
[2025-10-12 12:28:11] 2025-10-12 16:27:37,040 | INFO     | sum of deviations: -762055352796.163
[2025-10-12 12:28:11] 2025-10-12 16:27:37,040 | INFO     | mean x: 1760261533.0269277
[2025-10-12 12:28:11] 2025-10-12 16:27:37,041 | INFO     | mean y: 2237914.643818849
[2025-10-12 12:28:11] 2025-10-12 16:27:37,041 | INFO     | -- intersect: 7935462018.578394
[2025-10-12 12:28:11] 2025-10-12 16:27:37,041 | INFO     | intersect: 7935462018.578394
[2025-10-12 12:28:11] 2025-10-12 16:27:37,042 | INFO     | chi2: 3.801498927673295
[2025-10-12 12:28:11] 2025-10-12 16:27:37,042 | INFO     | current chi2=3.801498927673295 (change=33.81280685332924 %)
[2025-10-12 12:28:11] 2025-10-12 16:27:37,043 | INFO     | sum of square deviations: 166002568334.16815
[2025-10-12 12:28:11] 2025-10-12 16:27:37,061 | INFO     | sum of deviations: -769175515677.8519
[2025-10-12 12:28:11] 2025-10-12 16:27:37,061 | INFO     | mean x: 1760261685.5320196
[2025-10-12 12:28:11] 2025-10-12 16:27:37,061 | INFO     | mean y: 2238260.013546798
[2025-10-12 12:28:11] 2025-10-12 16:27:37,061 | INFO     | -- intersect: 8158438512.11756
[2025-10-12 12:28:11] 2025-10-12 16:27:37,062 | INFO     | intersect: 8158438512.11756
[2025-10-12 12:28:11] 2025-10-12 16:27:37,063 | INFO     | chi2: 3.6922620770824794
[2025-10-12 12:28:11] 2025-10-12 16:27:37,063 | INFO     | current chi2=3.6922620770824794 (change=2.873520489394798 %)
[2025-10-12 12:28:11] 2025-10-12 16:27:37,063 | INFO     | left removable region: 20
[2025-10-12 12:28:11] 2025-10-12 16:27:37,064 | INFO     | sum of square deviations: 153452566359.7702
[2025-10-12 12:28:11] 2025-10-12 16:27:37,081 | INFO     | sum of deviations: -486887471160.5499
[2025-10-12 12:28:11] 2025-10-12 16:27:37,081 | INFO     | mean x: 1760261655.0530972
[2025-10-12 12:28:11] 2025-10-12 16:27:37,081 | INFO     | mean y: 2243694.346396966
[2025-10-12 12:28:11] 2025-10-12 16:27:37,081 | INFO     | -- intersect: 5587352931.296732
[2025-10-12 12:28:11] 2025-10-12 16:27:37,082 | INFO     | intersect: 5587352931.296732
[2025-10-12 12:28:11] 2025-10-12 16:27:37,083 | INFO     | chi2: 1.1158357721749652
[2025-10-12 12:28:11] 2025-10-12 16:27:37,083 | INFO     | -- intersect: 5587352931.296732
[2025-10-12 12:28:11] 2025-10-12 16:27:37,083 | INFO     | current memory leak: -3.17 B/s (using 791 data points, chi2=1.12)
[2025-10-12 12:28:11] 2025-10-12 16:27:37,084 | INFO     | could have reported an average CPU frequency of 2601 MHz (20 samples)
[2025-10-12 12:28:11] 2025-10-12 16:27:37,084 | INFO     | ..............................
[2025-10-12 12:28:11] 2025-10-12 16:27:37,084 | INFO     | . Timing measurements:
[2025-10-12 12:28:11] 2025-10-12 16:27:37,085 | INFO     | . get job = 0 s
[2025-10-12 12:28:11] 2025-10-12 16:27:37,085 | INFO     | . initial setup = 2 s
[2025-10-12 12:28:11] 2025-10-12 16:27:37,085 | INFO     | . payload setup = 37 s
[2025-10-12 12:28:11] 2025-10-12 16:27:37,085 | INFO     | . stage-in = 0 s
[2025-10-12 12:28:11] 2025-10-12 16:27:37,085 | INFO     | . payload execution = 50112 s
[2025-10-12 12:28:11] 2025-10-12 16:27:37,085 | INFO     | . stage-out = 4 s
[2025-10-12 12:28:11] 2025-10-12 16:27:37,085 | INFO     | . log creation = 0 s
[2025-10-12 12:28:11] 2025-10-12 16:27:37,085 | INFO     | ..............................
[2025-10-12 12:28:11] 2025-10-12 16:27:37,188 | INFO     | 
[2025-10-12 12:28:11] 2025-10-12 16:27:37,188 | INFO     | job summary report
[2025-10-12 12:28:11] 2025-10-12 16:27:37,188 | INFO     | --------------------------------------------------
[2025-10-12 12:28:11] 2025-10-12 16:27:37,188 | INFO     | PanDA job id: 6831880013
[2025-10-12 12:28:11] 2025-10-12 16:27:37,188 | INFO     | task id: 46376905
[2025-10-12 12:28:11] 2025-10-12 16:27:37,188 | INFO     | errors: (none)
[2025-10-12 12:28:11] 2025-10-12 16:27:37,189 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 12:28:11] 2025-10-12 16:27:37,189 | INFO     | pilot state: finished 
[2025-10-12 12:28:11] 2025-10-12 16:27:37,189 | INFO     | transexitcode: 0
[2025-10-12 12:28:11] 2025-10-12 16:27:37,189 | INFO     | exeerrorcode: 0
[2025-10-12 12:28:11] 2025-10-12 16:27:37,189 | INFO     | exeerrordiag: 
[2025-10-12 12:28:11] 2025-10-12 16:27:37,189 | INFO     | exitcode: 0
[2025-10-12 12:28:11] 2025-10-12 16:27:37,189 | INFO     | exitmsg: OK
[2025-10-12 12:28:11] 2025-10-12 16:27:37,189 | INFO     | cpuconsumptiontime: 44499 s
[2025-10-12 12:28:11] 2025-10-12 16:27:37,189 | INFO     | nevents: 400
[2025-10-12 12:28:11] 2025-10-12 16:27:37,190 | INFO     | neventsw: 0
[2025-10-12 12:28:11] 2025-10-12 16:27:37,190 | INFO     | pid: 3399540
[2025-10-12 12:28:11] 2025-10-12 16:27:37,190 | INFO     | pgrp: 3399540
[2025-10-12 12:28:11] 2025-10-12 16:27:37,190 | INFO     | corecount: 12
[2025-10-12 12:28:11] 2025-10-12 16:27:37,190 | INFO     | event service: False
[2025-10-12 12:28:11] 2025-10-12 16:27:37,190 | INFO     | sizes: {0: 2348639, 1: 2348667, 2: 2348838, 13: 2348866, 24: 2348922, 25: 2349212, 34: 2349368, 50154: 2386213, 50159: 2395211, 50162: 2395267, 50186: 2395291}
[2025-10-12 12:28:11] 2025-10-12 16:27:37,190 | INFO     | --------------------------------------------------
[2025-10-12 12:28:11] 2025-10-12 16:27:37,190 | INFO     | 
[2025-10-12 12:28:11] 2025-10-12 16:27:37,190 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-12 12:28:11] 2025-10-12 16:27:37,318 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 12:28:11] 2025-10-12 16:27:37,318 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 12:28:11] 2025-10-12 16:27:37,318 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 12:28:11] 2025-10-12 16:27:37,319 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 12:28:11] 2025-10-12 16:27:37,319 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 12:28:11] 2025-10-12 16:27:37,319 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 12:28:11] 2025-10-12 16:27:37,319 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 12:28:11] 2025-10-12 16:27:37,319 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 12:28:11] 2025-10-12 16:27:37,319 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 12:28:11] 2025-10-12 16:27:37,319 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 12:28:11] 2025-10-12 16:27:37,319 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 12:28:11] 2025-10-12 16:27:37,319 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 12:28:11] 2025-10-12 16:27:37,319 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 12:28:11] 2025-10-12 16:27:37,320 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 12:28:11] 2025-10-12 16:27:37,320 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 12:28:11] 2025-10-12 16:27:37,320 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 12:28:11] 2025-10-12 16:27:37,320 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 12:28:11] 2025-10-12 16:27:37,320 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 12:28:11] 2025-10-12 16:27:37,320 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 12:28:11] 2025-10-12 16:27:37,320 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 12:28:11] 2025-10-12 16:27:37,320 | INFO     | job 6831880013 has completed (purged errors)
[2025-10-12 12:28:11] 2025-10-12 16:27:37,321 | INFO     | overall cleanup function is called
[2025-10-12 12:28:11] 2025-10-12 16:27:38,330 | INFO     | --- collectZombieJob: --- 10, [3399540]
[2025-10-12 12:28:11] 2025-10-12 16:27:38,330 | INFO     | zombie collector waiting for pid 3399540
[2025-10-12 12:28:11] 2025-10-12 16:27:38,330 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 12:28:11] 2025-10-12 16:27:38,330 | INFO     | collected zombie processes
[2025-10-12 12:28:11] 2025-10-12 16:27:38,330 | INFO     | will attempt to kill all subprocesses of pid=3399540
[2025-10-12 12:28:11] 2025-10-12 16:27:39,135 | INFO     | process IDs to be killed: [3399540] (in reverse order)
[2025-10-12 12:28:11] 2025-10-12 16:27:39,458 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 12:28:11] 2025-10-12 16:27:39,458 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 12:28:11] 2025-10-12 16:27:39,526 | INFO     | did not find any defunct processes belonging to 3399540
[2025-10-12 12:28:11] 2025-10-12 16:27:39,548 | INFO     | did not find any defunct processes belonging to 3399540
[2025-10-12 12:28:11] 2025-10-12 16:27:39,548 | INFO     | ready for new job
[2025-10-12 12:28:11] 2025-10-12 16:27:39,548 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 12:28:11] 2025-10-12 16:27:39,579 | INFO     | ***************************************
[2025-10-12 12:28:11] 2025-10-12 16:27:39,579 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-12 12:28:11] 2025-10-12 16:27:39,579 | INFO     | ***************************************
[2025-10-12 12:28:11] 2025-10-12 16:27:39,579 | INFO     | 
[2025-10-12 12:28:11] 2025-10-12 16:27:39,595 | INFO     | architecture information:
[2025-10-12 12:28:11] 2025-10-12 16:27:39,604 | INFO     | executing command: cat /etc/os-release
[2025-10-12 12:28:11] 2025-10-12 16:27:39,636 | INFO     | cat /etc/os-release:
[2025-10-12 12:28:11] NAME="CentOS Linux"
[2025-10-12 12:28:11] VERSION="7 (Core)"
[2025-10-12 12:28:11] ID="centos"
[2025-10-12 12:28:11] ID_LIKE="rhel fedora"
[2025-10-12 12:28:11] VERSION_ID="7"
[2025-10-12 12:28:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 12:28:11] ANSI_COLOR="0;31"
[2025-10-12 12:28:11] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 12:28:11] HOME_URL="https://www.centos.org/"
[2025-10-12 12:28:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 12:28:11] 
[2025-10-12 12:28:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 12:28:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 12:28:11] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 12:28:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 12:28:11] 
[2025-10-12 12:28:11] 2025-10-12 16:27:39,636 | INFO     | ***************************************
[2025-10-12 12:28:11] 2025-10-12 16:27:40,139 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-12 12:28:11] 2025-10-12 16:27:40,220 | INFO     | sufficient remaining disk space (52534706176 B)
[2025-10-12 12:28:11] 2025-10-12 16:27:40,220 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 12:28:11] 2025-10-12 16:27:40,221 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 12:28:11] 2025-10-12 16:27:40,221 | INFO     | update_server=False
[2025-10-12 12:28:11] 2025-10-12 16:27:40,221 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 12:28:11] 2025-10-12 16:27:40,394 | INFO     | all payload control threads have been joined
[2025-10-12 12:28:11] 2025-10-12 16:27:40,471 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 12:28:11] 2025-10-12 16:27:40,471 | INFO     | aborting loop
[2025-10-12 12:28:11] 2025-10-12 16:27:40,869 | INFO     | all data control threads have been joined
[2025-10-12 12:28:11] 2025-10-12 16:27:41,227 | INFO     | [job] retrieve thread has finished
[2025-10-12 12:28:11] 2025-10-12 16:27:41,354 | INFO     | all job control threads have been joined
[2025-10-12 12:28:11] 2025-10-12 16:27:41,363 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 12:28:11] 2025-10-12 16:27:41,400 | INFO     | [payload] control thread has finished
[2025-10-12 12:28:11] 2025-10-12 16:27:41,431 | INFO     | [data] copytool_in thread has finished
[2025-10-12 12:28:11] 2025-10-12 16:27:41,477 | INFO     | [job] job monitor thread has finished
[2025-10-12 12:28:11] 2025-10-12 16:27:41,482 | INFO     | [job] validate thread has finished
[2025-10-12 12:28:11] 2025-10-12 16:27:41,512 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 12:28:11] 2025-10-12 16:27:41,585 | INFO     | [payload] validate_post thread has finished
[2025-10-12 12:28:11] 2025-10-12 16:27:41,875 | INFO     | [data] control thread has finished
[2025-10-12 12:28:11] 2025-10-12 16:27:41,904 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 12:28:11] 2025-10-12 16:27:42,000 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 12:28:11] 2025-10-12 16:27:42,036 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 12:28:11] 2025-10-12 16:27:42,204 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 12:28:11] 2025-10-12 16:27:42,329 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 12:28:11] 2025-10-12 16:27:42,361 | INFO     | [job] control thread has finished
[2025-10-12 12:28:11] 2025-10-12 16:27:42,749 | INFO     | [payload] failed_post thread has finished
[2025-10-12 12:28:11] 2025-10-12 16:27:43,210 | INFO     | [job] queue monitor thread has finished
[2025-10-12 12:28:11] 2025-10-12 16:27:43,370 | INFO     | [data] copytool_out thread has finished
[2025-10-12 12:28:11] 2025-10-12 16:27:46,045 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 12:28:11] 2025-10-12 16:27:47,597 | INFO     | [monitor] cgroup control has ended
[2025-10-12 12:28:11] 2025-10-12 16:27:49,672 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140167710164800)>', '<ExcThread(monitor, started 140167356589824)>']
[2025-10-12 12:28:11] 2025-10-12 16:27:54,698 | INFO     | all workflow threads have been joined
[2025-10-12 12:28:11] 2025-10-12 16:27:54,698 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 12:28:11] 2025-10-12 16:27:54,698 | INFO     | traces error code: 0
[2025-10-12 12:28:11] 2025-10-12 16:27:54,698 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 12:28:11] 2025-10-12 16:28:10,328 | INFO     | PID=3389934 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 12:28:11] 2025-10-12 16:28:10,328 | INFO     | .. there are 42 such processes running
[2025-10-12 12:28:11] 2025-10-12 16:28:10,329 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 12:28:11] 2025-10-12 16:28:10,329 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 12:28:11] 2025-10-12 16:28:10,329 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 12:28:11] 2025-10-12 16:28:10,330 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 12:28:11] 2025-10-12 16:28:10,330 | INFO     | [monitor] control thread has ended
[2025-10-12 12:28:11] 2025-10-12 16:28:10,700 [wrapper] ==== pilot stdout END ====
[2025-10-12 12:28:11] 2025-10-12 16:28:10,771 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 12:28:11] 2025-10-12 16:28:10,847 [wrapper] pilotpid: 3389934
[2025-10-12 12:28:11] 2025-10-12 16:28:10,911 [wrapper] Pilot exit status: 0
[2025-10-12 12:28:11] 2025-10-12 16:28:11,024 [wrapper] pandaids: 6831880013 6831880013
[2025-10-12 12:28:11] 2025-10-12 16:28:11,192 [wrapper] cleanup supervisor_pilot 1887517 3389935
[2025-10-12 12:28:11] 2025-10-12 16:28:11,197 [wrapper] Test setup, not cleaning
[2025-10-12 12:28:11] 2025-10-12 16:28:11,199 [wrapper] apfmon messages muted
[2025-10-12 12:28:11] 2025-10-12 16:28:11,202 [wrapper] ==== wrapper stdout END ====
[2025-10-12 12:28:11] 2025-10-12 16:28:11,212 [wrapper] ==== wrapper stderr END ====
[2025-10-12 12:28:11]  *** Error codes and diagnostics ***
[2025-10-12 12:28:11]     "exeErrorCode": 0,
[2025-10-12 12:28:11]     "exeErrorDiag": "",
[2025-10-12 12:28:11]     "pilotErrorCode": 0,
[2025-10-12 12:28:11]     "pilotErrorDiag": "",
[2025-10-12 12:28:11]  *** Listing of results directory ***
[2025-10-12 12:28:11] total 607676
[2025-10-12 12:28:11] drwx------. 4 boincer umatlas      4096 Jul 31 09:00 pilot3
[2025-10-12 12:28:11] -rw-r--r--. 1 boincer umatlas    552446 Oct  5 14:41 pilot3.tar.gz
[2025-10-12 12:28:11] -rw-r--r--. 1 boincer umatlas      5112 Oct  5 14:43 queuedata.json
[2025-10-12 12:28:11] -rwx------. 1 boincer umatlas     36292 Oct  5 14:43 runpilot2-wrapper.sh
[2025-10-12 12:28:11] -rw-r--r--. 1 boincer umatlas       100 Oct 11 22:17 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 12:28:11] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 11 22:17 run_atlas
[2025-10-12 12:28:11] -rw-r--r--. 1 boincer umatlas       105 Oct 11 22:17 job.xml
[2025-10-12 12:28:11] -rw-r--r--. 3 boincer umatlas 216608370 Oct 11 22:17 EVNT.46376901._003422.pool.root.1
[2025-10-12 12:28:11] -rw-r--r--. 3 boincer umatlas 216608370 Oct 11 22:17 ATLAS.root_0
[2025-10-12 12:28:11] -rw-r--r--. 2 boincer umatlas     15120 Oct 11 22:17 start_atlas.sh
[2025-10-12 12:28:11] drwxrwx--x. 2 boincer umatlas      4096 Oct 11 22:17 shared
[2025-10-12 12:28:11] -rw-r--r--. 2 boincer umatlas    565596 Oct 11 22:17 input.tar.gz
[2025-10-12 12:28:11] -rw-r--r--. 1 boincer umatlas         0 Oct 11 22:17 boinc_lockfile
[2025-10-12 12:28:11] -rw-r--r--. 1 boincer umatlas      2516 Oct 11 22:29 pandaJob.out
[2025-10-12 12:28:11] -rw-------. 1 boincer umatlas    975496 Oct 11 22:30 agis_schedconf.cvmfs.json
[2025-10-12 12:28:11] -rw-r--r--. 1 boincer umatlas      6658 Oct 12 12:22 init_data.xml
[2025-10-12 12:28:11] -rw-------. 1 boincer umatlas 174921450 Oct 12 12:23 HITS.46376905._092916.pool.root.1
[2025-10-12 12:28:11] -rw-r--r--. 1 boincer umatlas       531 Oct 12 12:24 boinc_task_state.xml
[2025-10-12 12:28:11] -rw-------. 1 boincer umatlas      1052 Oct 12 12:27 memory_monitor_summary.json
[2025-10-12 12:28:11] -rw-------. 1 boincer umatlas   1560580 Oct 12 12:27 agis_ddmendpoints.agis.ALL.json
[2025-10-12 12:28:11] -rw-------. 1 boincer umatlas    797469 Oct 12 12:27 log.46376905._092916.job.log.tgz.1
[2025-10-12 12:28:11] -rw-------. 1 boincer umatlas      7841 Oct 12 12:27 heartbeat.json
[2025-10-12 12:28:11] -rw-r--r--. 1 boincer umatlas      8192 Oct 12 12:28 boinc_mmap_file
[2025-10-12 12:28:11] -rw-r--r--. 1 boincer umatlas        28 Oct 12 12:28 wrapper_checkpoint.txt
[2025-10-12 12:28:11] -rw-------. 1 boincer umatlas        96 Oct 12 12:28 pilot_heartbeat.json
[2025-10-12 12:28:11] -rw-------. 1 boincer umatlas       823 Oct 12 12:28 pilotlog.txt
[2025-10-12 12:28:11] -rw-------. 1 boincer umatlas   4320298 Oct 12 12:28 log.46376905._092916.job.log.1
[2025-10-12 12:28:11] -rw-------. 1 boincer umatlas       357 Oct 12 12:28 output.list
[2025-10-12 12:28:11] -rw-r--r--. 1 boincer umatlas       620 Oct 12 12:28 runtime_log
[2025-10-12 12:28:11] -rw-------. 1 boincer umatlas   5140480 Oct 12 12:28 result.tar.gz
[2025-10-12 12:28:11] -rw-r--r--. 1 boincer umatlas      8776 Oct 12 12:28 runtime_log.err
[2025-10-12 12:28:11] -rw-------. 1 boincer umatlas       782 Oct 12 12:28 6trNDm4siP8n9Rq4apOajLDm4fhM0noT9bVof3QYDmBCHMDmosRUOo.diag
[2025-10-12 12:28:11] -rw-r--r--. 1 boincer umatlas     23244 Oct 12 12:28 stderr.txt
[2025-10-12 12:28:11] HITS file was successfully produced:
[2025-10-12 12:28:11] -rw-------. 1 boincer umatlas 174921450 Oct 12 12:23 shared/HITS.pool.root.1
[2025-10-12 12:28:11]  *** Contents of shared directory: ***
[2025-10-12 12:28:11] total 387952
[2025-10-12 12:28:11] -rw-r--r--. 3 boincer umatlas 216608370 Oct 11 22:17 ATLAS.root_0
[2025-10-12 12:28:11] -rw-r--r--. 2 boincer umatlas     15120 Oct 11 22:17 start_atlas.sh
[2025-10-12 12:28:11] -rw-r--r--. 2 boincer umatlas    565596 Oct 11 22:17 input.tar.gz
[2025-10-12 12:28:11] -rw-------. 1 boincer umatlas 174921450 Oct 12 12:23 HITS.pool.root.1
[2025-10-12 12:28:11] -rw-------. 1 boincer umatlas   5140480 Oct 12 12:28 result.tar.gz
12:28:12 (3385217): run_atlas exited; CPU time 45943.352845
12:28:12 (3385217): called boinc_finish(0)

</stderr_txt>
]]>

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