Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
15:50:44 (2401188): wrapper (7.7.26015): starting
15:50:44 (2401188): wrapper: running run_atlas (--nthreads 3)
[2025-10-11 15:50:44] Arguments: --nthreads 3
[2025-10-11 15:50:44] Threads: 3
[2025-10-11 15:50:44] Checking for CVMFS
[2025-10-11 15:50:44] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 15:50:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 15:50:44] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 15:50:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 15:50:45] 2.9.2.0 1544458 3020 70396 151585 2 57 30523426 36864001 0 130560 0 2238852 99.991 99968 1123 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-11 15:50:45] CVMFS is ok
[2025-10-11 15:50:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 15:50:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 15:50:45] Further information can be found at the LHC@home message board.
[2025-10-11 15:50:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 15:50:45] Checking for apptainer binary...
[2025-10-11 15:50:45] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 15:50:45] Running /usr/bin/apptainer --version
[2025-10-11 15:50:45] apptainer version 1.4.1-1.1
[2025-10-11 15:50:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 15:50:45] atlasA223a
[2025-10-11 15:50:45] apptainer works
[2025-10-11 15:50:45] Set ATHENA_PROC_NUMBER=3
[2025-10-11 15:50:45] Set ATHENA_CORE_NUMBER=3
[2025-10-11 15:50:45] Starting ATLAS job with PandaID=6837873685
[2025-10-11 15:50:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-11 17:23:11]  *** The last 200 lines of the pilot log: ***
[2025-10-11 17:23:11] 2025-10-11 15:22:21,533 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-11 17:23:11] 2025-10-11 15:22:21,533 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-11 17:23:11] 2025-10-11 15:22:21,533 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-11 17:23:11] 2025-10-11 15:22:21,533 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-11 17:23:11] 2025-10-11 15:22:21,533 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-11 17:23:11] 2025-10-11 15:22:21,533 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-11 17:23:11] 2025-10-11 15:22:21,533 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-11 17:23:11] 2025-10-11 15:22:21,533 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-11 17:23:11] 2025-10-11 15:22:21,533 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-11 17:23:11] 2025-10-11 15:22:21,534 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-11 17:23:11] 2025-10-11 15:22:21,534 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-11 17:23:11] 2025-10-11 15:22:21,534 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-11 17:23:11] 2025-10-11 15:22:21,534 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-11 17:23:11] 2025-10-11 15:22:21,534 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-11 17:23:11] 2025-10-11 15:22:21,534 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-11 17:23:11] 2025-10-11 15:22:21,534 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-11 17:23:11] 2025-10-11 15:22:21,534 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-11 17:23:11] 2025-10-11 15:22:21,534 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-11 17:23:11] 2025-10-11 15:22:21,534 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-11 17:23:11] 2025-10-11 15:22:21,534 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-11 17:23:11] 2025-10-11 15:22:21,534 | INFO     | job 6837873685 has completed (purged errors)
[2025-10-11 17:23:11] 2025-10-11 15:22:21,534 | INFO     | overall cleanup function is called
[2025-10-11 17:23:11] 2025-10-11 15:22:22,540 | INFO     | --- collectZombieJob: --- 10, [2411373]
[2025-10-11 17:23:11] 2025-10-11 15:22:22,541 | INFO     | zombie collector waiting for pid 2411373
[2025-10-11 17:23:11] 2025-10-11 15:22:22,542 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-11 17:23:11] 2025-10-11 15:22:22,542 | INFO     | collected zombie processes
[2025-10-11 17:23:11] 2025-10-11 15:22:22,542 | INFO     | will attempt to kill all subprocesses of pid=2411373
[2025-10-11 17:23:11] 2025-10-11 15:22:22,582 | INFO     | process IDs to be killed: [2411373] (in reverse order)
[2025-10-11 17:23:11] 2025-10-11 15:22:22,606 | WARNING  | found no corresponding commands to process id(s)
[2025-10-11 17:23:11] 2025-10-11 15:22:22,606 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-11 17:23:11] 2025-10-11 15:22:22,607 | INFO     | did not find any defunct processes belonging to 2411373
[2025-10-11 17:23:11] 2025-10-11 15:22:22,608 | INFO     | did not find any defunct processes belonging to 2411373
[2025-10-11 17:23:11] 2025-10-11 15:22:22,609 | INFO     | ready for new job
[2025-10-11 17:23:11] 2025-10-11 15:22:22,609 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-11 17:23:11] 2025-10-11 15:22:22,609 | INFO     | ***************************************
[2025-10-11 17:23:11] 2025-10-11 15:22:22,609 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-11 17:23:11] 2025-10-11 15:22:22,609 | INFO     | ***************************************
[2025-10-11 17:23:11] 2025-10-11 15:22:22,609 | INFO     | 
[2025-10-11 17:23:11] 2025-10-11 15:22:22,610 | INFO     | architecture information:
[2025-10-11 17:23:11] 2025-10-11 15:22:22,610 | INFO     | executing command: cat /etc/os-release
[2025-10-11 17:23:11] 2025-10-11 15:22:22,620 | INFO     | cat /etc/os-release:
[2025-10-11 17:23:11] NAME="CentOS Linux"
[2025-10-11 17:23:11] VERSION="7 (Core)"
[2025-10-11 17:23:11] ID="centos"
[2025-10-11 17:23:11] ID_LIKE="rhel fedora"
[2025-10-11 17:23:11] VERSION_ID="7"
[2025-10-11 17:23:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-11 17:23:11] ANSI_COLOR="0;31"
[2025-10-11 17:23:11] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-11 17:23:11] HOME_URL="https://www.centos.org/"
[2025-10-11 17:23:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-11 17:23:11] 
[2025-10-11 17:23:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-11 17:23:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-11 17:23:11] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-11 17:23:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-11 17:23:11] 
[2025-10-11 17:23:11] 2025-10-11 15:22:22,620 | INFO     | ***************************************
[2025-10-11 17:23:11] 2025-10-11 15:22:23,123 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-11 17:23:11] 2025-10-11 15:22:23,159 | INFO     | sufficient remaining disk space (329486696448 B)
[2025-10-11 17:23:11] 2025-10-11 15:22:23,160 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-11 17:23:11] 2025-10-11 15:22:23,160 | INFO     | current server update state: UPDATING_FINAL
[2025-10-11 17:23:11] 2025-10-11 15:22:23,160 | INFO     | update_server=False
[2025-10-11 17:23:11] 2025-10-11 15:22:23,160 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-11 17:23:11] 2025-10-11 15:22:23,161 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-11 17:23:11] 2025-10-11 15:22:23,161 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-11 17:23:11] 2025-10-11 15:22:23,162 | INFO     | aborting loop
[2025-10-11 17:23:11] 2025-10-11 15:22:23,219 | INFO     | all job control threads have been joined
[2025-10-11 17:23:11] 2025-10-11 15:22:24,039 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-11 17:23:11] 2025-10-11 15:22:24,136 | INFO     | all data control threads have been joined
[2025-10-11 17:23:11] 2025-10-11 15:22:24,167 | INFO     | [job] retrieve thread has finished
[2025-10-11 17:23:11] 2025-10-11 15:22:24,167 | INFO     | [job] queue monitor thread has finished
[2025-10-11 17:23:11] 2025-10-11 15:22:24,168 | INFO     | [job] job monitor thread has finished
[2025-10-11 17:23:11] 2025-10-11 15:22:24,225 | INFO     | [job] control thread has finished
[2025-10-11 17:23:11] 2025-10-11 15:22:24,305 | INFO     | all payload control threads have been joined
[2025-10-11 17:23:11] 2025-10-11 15:22:24,685 | INFO     | [payload] failed_post thread has finished
[2025-10-11 17:23:11] 2025-10-11 15:22:24,686 | INFO     | [payload] execute_payloads thread has finished
[2025-10-11 17:23:11] 2025-10-11 15:22:25,142 | INFO     | [data] control thread has finished
[2025-10-11 17:23:11] 2025-10-11 15:22:25,251 | INFO     | [job] create_data_payload thread has finished
[2025-10-11 17:23:11] 2025-10-11 15:22:25,273 | INFO     | [payload] validate_pre thread has finished
[2025-10-11 17:23:11] 2025-10-11 15:22:25,310 | INFO     | [payload] control thread has finished
[2025-10-11 17:23:11] 2025-10-11 15:22:25,337 | INFO     | [data] copytool_in thread has finished
[2025-10-11 17:23:11] 2025-10-11 15:22:25,346 | INFO     | [job] validate thread has finished
[2025-10-11 17:23:11] 2025-10-11 15:22:25,420 | INFO     | [payload] validate_post thread has finished
[2025-10-11 17:23:11] 2025-10-11 15:22:26,045 | INFO     | [data] copytool_out thread has finished
[2025-10-11 17:23:11] 2025-10-11 15:22:26,465 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-11 17:23:11] 2025-10-11 15:22:30,471 | INFO     | [data] queue_monitor thread has finished
[2025-10-11 17:23:11] 2025-10-11 15:22:33,513 | INFO     | job.realtimelogging is not enabled
[2025-10-11 17:23:11] 2025-10-11 15:22:34,519 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-11 17:23:11] 2025-10-11 15:22:53,534 | INFO     | PID=2404923 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-11 17:23:11] 2025-10-11 15:22:53,536 | INFO     | found 0 job(s) in 20 queues
[2025-10-11 17:23:11] 2025-10-11 15:22:53,536 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-11 17:23:11] 2025-10-11 15:22:53,536 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-11 17:23:11] 2025-10-11 15:23:05,531 | INFO     | [monitor] cgroup control has ended
[2025-10-11 17:23:11] 2025-10-11 15:23:06,359 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139684495521600)>', '<ExcThread(monitor, started 139683854010112)>']
[2025-10-11 17:23:11] 2025-10-11 15:23:06,606 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-11 17:23:11] 2025-10-11 15:23:06,606 | INFO     | [monitor] control thread has ended
[2025-10-11 17:23:11] 2025-10-11 15:23:11,385 | INFO     | all workflow threads have been joined
[2025-10-11 17:23:11] 2025-10-11 15:23:11,386 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-11 17:23:11] 2025-10-11 15:23:11,387 | INFO     | traces error code: 0
[2025-10-11 17:23:11] 2025-10-11 15:23:11,388 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-11 17:23:11] 2025-10-11 15:23:11,437 [wrapper] ==== pilot stdout END ====
[2025-10-11 17:23:11] 2025-10-11 15:23:11,440 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-11 17:23:11] 2025-10-11 15:23:11,443 [wrapper] pilotpid: 2404923
[2025-10-11 17:23:11] 2025-10-11 15:23:11,445 [wrapper] Pilot exit status: 0
[2025-10-11 17:23:11] 2025-10-11 15:23:11,453 [wrapper] pandaids: 6837873685
[2025-10-11 17:23:11] 2025-10-11 15:23:11,470 [wrapper] cleanup supervisor_pilot 2423496 2404924
[2025-10-11 17:23:11] 2025-10-11 15:23:11,473 [wrapper] Test setup, not cleaning
[2025-10-11 17:23:11] 2025-10-11 15:23:11,476 [wrapper] apfmon messages muted
[2025-10-11 17:23:11] 2025-10-11 15:23:11,479 [wrapper] ==== wrapper stdout END ====
[2025-10-11 17:23:11] 2025-10-11 15:23:11,482 [wrapper] ==== wrapper stderr END ====
[2025-10-11 17:23:11]  *** Error codes and diagnostics ***
[2025-10-11 17:23:11]     "exeErrorCode": 0,
[2025-10-11 17:23:11]     "exeErrorDiag": "",
[2025-10-11 17:23:11]     "pilotErrorCode": 0,
[2025-10-11 17:23:11]     "pilotErrorDiag": "",
[2025-10-11 17:23:11]  *** Listing of results directory ***
[2025-10-11 17:23:11] total 411872
[2025-10-11 17:23:11] -rw-r--r-- 1 boinc boinc    557409 Oct 11 00:56 pilot3.tar.gz
[2025-10-11 17:23:11] -rwx------ 1 boinc boinc     36292 Oct 11 00:58 runpilot2-wrapper.sh
[2025-10-11 17:23:11] -rw-r--r-- 1 boinc boinc      5112 Oct 11 00:58 queuedata.json
[2025-10-11 17:23:11] -rw-r--r-- 1 boinc boinc       100 Oct 11 15:50 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-11 17:23:11] -rwxr-xr-x 1 boinc boinc      7986 Oct 11 15:50 run_atlas
[2025-10-11 17:23:11] -rw-r--r-- 1 boinc boinc       105 Oct 11 15:50 job.xml
[2025-10-11 17:23:11] -rw-r--r-- 2 boinc boinc 221439667 Oct 11 15:50 EVNT.46676267._001880.pool.root.1
[2025-10-11 17:23:11] -rw-r--r-- 2 boinc boinc    569676 Oct 11 15:50 input.tar.gz
[2025-10-11 17:23:11] -rw-r--r-- 2 boinc boinc     15120 Oct 11 15:50 start_atlas.sh
[2025-10-11 17:23:11] drwxrwx--x 2 boinc boinc      4096 Oct 11 15:50 shared
[2025-10-11 17:23:11] -rw-r--r-- 1 boinc boinc         0 Oct 11 15:50 boinc_setup_complete
[2025-10-11 17:23:11] -rw-r--r-- 1 boinc boinc      6200 Oct 11 15:50 init_data.xml
[2025-10-11 17:23:11] -rw-r--r-- 1 boinc boinc         0 Oct 11 15:50 boinc_lockfile
[2025-10-11 17:23:11] -rw-r--r-- 1 boinc boinc      2547 Oct 11 15:50 pandaJob.out
[2025-10-11 17:23:11] -rw------- 1 boinc boinc    975520 Oct 11 15:50 agis_schedconf.cvmfs.json
[2025-10-11 17:23:11] -rw------- 1 boinc boinc   1560580 Oct 11 15:50 agis_ddmendpoints.agis.ALL.json
[2025-10-11 17:23:11] drwx------ 5 boinc boinc      4096 Oct 11 15:50 pilot3
[2025-10-11 17:23:11] -rw------- 1 boinc boinc 194323252 Oct 11 17:21 HITS.46676269._046537.pool.root.1
[2025-10-11 17:23:11] -rw-r--r-- 1 boinc boinc       530 Oct 11 17:21 boinc_task_state.xml
[2025-10-11 17:23:11] -rw------- 1 boinc boinc      1018 Oct 11 17:22 memory_monitor_summary.json
[2025-10-11 17:23:11] -rw------- 1 boinc boinc    248307 Oct 11 17:22 log.46676269._046537.job.log.tgz.1
[2025-10-11 17:23:11] -rw------- 1 boinc boinc      7775 Oct 11 17:22 heartbeat.json
[2025-10-11 17:23:11] -rw------- 1 boinc boinc        95 Oct 11 17:22 pilot_heartbeat.json
[2025-10-11 17:23:11] -rw-r--r-- 1 boinc boinc        27 Oct 11 17:22 wrapper_checkpoint.txt
[2025-10-11 17:23:11] -rw-r--r-- 1 boinc boinc      8192 Oct 11 17:22 boinc_mmap_file
[2025-10-11 17:23:11] -rw------- 1 boinc boinc      4824 Oct 11 17:23 pilotlog.txt
[2025-10-11 17:23:11] -rw------- 1 boinc boinc    801031 Oct 11 17:23 log.46676269._046537.job.log.1
[2025-10-11 17:23:11] -rw------- 1 boinc boinc       357 Oct 11 17:23 output.list
[2025-10-11 17:23:11] -rw-r--r-- 1 boinc boinc       620 Oct 11 17:23 runtime_log
[2025-10-11 17:23:11] -rw------- 1 boinc boinc   1064960 Oct 11 17:23 result.tar.gz
[2025-10-11 17:23:11] -rw-r--r-- 1 boinc boinc      8797 Oct 11 17:23 runtime_log.err
[2025-10-11 17:23:11] -rw------- 1 boinc boinc       662 Oct 11 17:23 VbJMDmVFbR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmjdeNDmYkFMCo.diag
[2025-10-11 17:23:11] -rw-r--r-- 1 boinc boinc     12928 Oct 11 17:23 stderr.txt
[2025-10-11 17:23:11] HITS file was successfully produced:
[2025-10-11 17:23:11] -rw------- 1 boinc boinc 194323252 Oct 11 17:21 shared/HITS.pool.root.1
[2025-10-11 17:23:11]  *** Contents of shared directory: ***
[2025-10-11 17:23:11] total 407648
[2025-10-11 17:23:11] -rw-r--r-- 2 boinc boinc 221439667 Oct 11 15:50 ATLAS.root_0
[2025-10-11 17:23:11] -rw-r--r-- 2 boinc boinc    569676 Oct 11 15:50 input.tar.gz
[2025-10-11 17:23:11] -rw-r--r-- 2 boinc boinc     15120 Oct 11 15:50 start_atlas.sh
[2025-10-11 17:23:11] -rw------- 1 boinc boinc 194323252 Oct 11 17:21 HITS.pool.root.1
[2025-10-11 17:23:11] -rw------- 1 boinc boinc   1064960 Oct 11 17:23 result.tar.gz
17:23:12 (2401188): run_atlas exited; CPU time 15724.496332
17:23:12 (2401188): called boinc_finish(0)

</stderr_txt>
]]>

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