Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
04:37:44 (467615): wrapper (7.7.26015): starting
04:37:44 (467615): wrapper: running run_atlas (--nthreads 12)
[2025-10-11 04:37:44] Arguments: --nthreads 12
[2025-10-11 04:37:44] Threads: 12
[2025-10-11 04:37:44] Checking for CVMFS
[2025-10-11 04:37:44] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 04:37:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 04:37:44] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 04:37:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 04:37:44] 2.11.0.0 3299214 1151 85500 151572 1 188 5043583 6144001 14705 130560 0 22729167 100.000 44517 214 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2025-10-11 04:37:44] CVMFS is ok
[2025-10-11 04:37:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 04:37:44] Checking for apptainer binary...
[2025-10-11 04:37:44] apptainer is not installed, using version from CVMFS
[2025-10-11 04:37:44] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 04:37:45] radiat0r
[2025-10-11 04:37:45] apptainer works
[2025-10-11 04:37:45] Set ATHENA_PROC_NUMBER=12
[2025-10-11 04:37:45] Set ATHENA_CORE_NUMBER=12
[2025-10-11 04:37:45] Starting ATLAS job with PandaID=6837707430
[2025-10-11 04:37:45] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-11 05:33:20]  *** The last 200 lines of the pilot log: ***
[2025-10-11 05:33:20]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f2/23/log.46676269._043680.job.log.tgz.1
[2025-10-11 05:33:20]  workdir=None
[2025-10-11 05:33:20] ]
[2025-10-11 05:33:20] 2025-10-11 05:32:34,738 | INFO     | transferring file log.46676269._043680.job.log.tgz.1 from /var/lib/boinc/slots/6/PanDA_Pilot-6837707430/log.46676269._043680.job.log.tgz.1 to /var/lib/boinc/slots/
[2025-10-11 05:33:20] 2025-10-11 05:32:34,739 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/6/PanDA_Pilot-6837707430/log.46676269._043680.job.log.tgz.1 /var/lib/boinc/slots/6/log.46676269._043680.job
[2025-10-11 05:33:20] 2025-10-11 05:32:34,767 | INFO     | adding to output.list: log.46676269._043680.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f2/23/log.46676269._043680.job.log.tg
[2025-10-11 05:33:20] 2025-10-11 05:32:34,768 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-11 05:33:20] 2025-10-11 05:32:34,768 | INFO     | summary of transferred files:
[2025-10-11 05:33:20] 2025-10-11 05:32:34,768 | INFO     |  -- lfn=log.46676269._043680.job.log.tgz.1, status_code=0, status=transferred
[2025-10-11 05:33:20] 2025-10-11 05:32:34,769 | INFO     | stage-out finished correctly
[2025-10-11 05:33:20] 2025-10-11 05:32:36,263 | INFO     | time since job start (3274s) is within the limit (172800.0s)
[2025-10-11 05:33:20] 2025-10-11 05:32:37,747 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-11 05:33:20] 2025-10-11 05:32:37,956 | WARNING  | process 480506 can no longer be monitored (due to stat problems) - aborting
[2025-10-11 05:33:20] 2025-10-11 05:32:37,957 | INFO     | using path: /var/lib/boinc/slots/6/PanDA_Pilot-6837707430/memory_monitor_summary.json (trf name=prmon)
[2025-10-11 05:33:20] 2025-10-11 05:32:38,267 | INFO     | time since job start (3276s) is within the limit (172800.0s)
[2025-10-11 05:33:20] 2025-10-11 05:32:38,752 | INFO     | number of running child processes to parent process 480506: 1
[2025-10-11 05:33:20] 2025-10-11 05:32:38,752 | INFO     | maximum number of monitored processes: 6
[2025-10-11 05:33:20] 2025-10-11 05:32:40,271 | INFO     | time since job start (3278s) is within the limit (172800.0s)
[2025-10-11 05:33:20] 2025-10-11 05:32:40,619 | INFO     | job 6837707430 has state=finished
[2025-10-11 05:33:20] 2025-10-11 05:32:40,619 | INFO     | preparing for final server update for job 6837707430 in state='finished'
[2025-10-11 05:33:20] 2025-10-11 05:32:40,620 | INFO     | this job has now completed (state=finished)
[2025-10-11 05:33:20] 2025-10-11 05:32:40,620 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-11 05:33:20] 2025-10-11 05:32:40,620 | INFO     | log transfer has been attempted: DONE
[2025-10-11 05:33:20] 2025-10-11 05:32:40,620 | INFO     | job 6837707430 has finished - writing final server update
[2025-10-11 05:33:20] 2025-10-11 05:32:40,621 | INFO     | total number of processed events: 400 (read)
[2025-10-11 05:33:20] 2025-10-11 05:32:40,623 | INFO     | executing command: lscpu
[2025-10-11 05:33:20] 2025-10-11 05:32:40,818 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-11 05:33:20] 2025-10-11 05:32:41,255 | INFO     | monitor loop #228: job 0:6837707430 is in state 'finished'
[2025-10-11 05:33:20] 2025-10-11 05:32:41,255 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 05:33:20] 2025-10-11 05:32:42,275 | INFO     | time since job start (3280s) is within the limit (172800.0s)
[2025-10-11 05:33:20] 2025-10-11 05:32:43,758 | INFO     | monitor loop #229: job 0:6837707430 is in state 'finished'
[2025-10-11 05:33:20] 2025-10-11 05:32:43,759 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 05:33:20] 2025-10-11 05:32:44,279 | INFO     | time since job start (3282s) is within the limit (172800.0s)
[2025-10-11 05:33:20] 2025-10-11 05:32:46,262 | INFO     | monitor loop #230: job 0:6837707430 is in state 'finished'
[2025-10-11 05:33:20] 2025-10-11 05:32:46,263 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 05:33:20] 2025-10-11 05:32:46,283 | INFO     | time since job start (3284s) is within the limit (172800.0s)
[2025-10-11 05:33:20] 2025-10-11 05:32:47,312 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-11 05:33:20] 2025-10-11 05:32:47,374 | INFO     | found 128 cores (64 cores per socket, 2 sockets) HT, CPU MHz: 2356.918687500002
[2025-10-11 05:33:20] 2025-10-11 05:32:47,447 | INFO     | using path: /var/lib/boinc/slots/6/PanDA_Pilot-6837707430/memory_monitor_summary.json (trf name=prmon)
[2025-10-11 05:33:20] 2025-10-11 05:32:47,448 | INFO     | extracted standard info from prmon json
[2025-10-11 05:33:20] 2025-10-11 05:32:47,448 | INFO     | extracted standard memory fields from prmon json
[2025-10-11 05:33:20] 2025-10-11 05:32:47,449 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-11 05:33:20] 2025-10-11 05:32:47,449 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-11 05:33:20] 2025-10-11 05:32:47,449 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-11 05:33:20] 2025-10-11 05:32:47,451 | INFO     | fitting pss+swap vs Time
[2025-10-11 05:33:20] 2025-10-11 05:32:47,451 | INFO     | sum of square deviations: 32179208.0
[2025-10-11 05:33:20] 2025-10-11 05:32:47,451 | INFO     | sum of deviations: 965390087.0
[2025-10-11 05:33:20] 2025-10-11 05:32:47,452 | INFO     | mean x: 1760159224.0
[2025-10-11 05:33:20] 2025-10-11 05:32:47,452 | INFO     | mean y: 2657393.276595745
[2025-10-11 05:33:20] 2025-10-11 05:32:47,452 | INFO     | -- intersect: -52802876738.924934
[2025-10-11 05:33:20] 2025-10-11 05:32:47,452 | INFO     | intersect: -52802876738.924934
[2025-10-11 05:33:20] 2025-10-11 05:32:47,452 | INFO     | chi2: 0.03676335203244533
[2025-10-11 05:33:20] 2025-10-11 05:32:47,452 | INFO     | -- intersect: -52802876738.924934
[2025-10-11 05:33:20] 2025-10-11 05:32:47,452 | INFO     | current memory leak: 30.00 B/s (using 47 data points, chi2=0.04)
[2025-10-11 05:33:20] 2025-10-11 05:32:47,453 | INFO     | could have reported an average CPU frequency of 2329 MHz (5 samples)
[2025-10-11 05:33:20] 2025-10-11 05:32:47,453 | INFO     | ..............................
[2025-10-11 05:33:20] 2025-10-11 05:32:47,453 | INFO     | . Timing measurements:
[2025-10-11 05:33:20] 2025-10-11 05:32:47,453 | INFO     | . get job = 0 s
[2025-10-11 05:33:20] 2025-10-11 05:32:47,453 | INFO     | . initial setup = 3 s
[2025-10-11 05:33:20] 2025-10-11 05:32:47,453 | INFO     | . payload setup = 8 s
[2025-10-11 05:33:20] 2025-10-11 05:32:47,453 | INFO     | . stage-in = 0 s
[2025-10-11 05:33:20] 2025-10-11 05:32:47,453 | INFO     | . payload execution = 3240 s
[2025-10-11 05:33:20] 2025-10-11 05:32:47,453 | INFO     | . stage-out = 0 s
[2025-10-11 05:33:20] 2025-10-11 05:32:47,454 | INFO     | . log creation = 0 s
[2025-10-11 05:33:20] 2025-10-11 05:32:47,454 | INFO     | ..............................
[2025-10-11 05:33:20] 2025-10-11 05:32:47,968 | INFO     | 
[2025-10-11 05:33:20] 2025-10-11 05:32:47,968 | INFO     | job summary report
[2025-10-11 05:33:20] 2025-10-11 05:32:47,968 | INFO     | --------------------------------------------------
[2025-10-11 05:33:20] 2025-10-11 05:32:47,968 | INFO     | PanDA job id: 6837707430
[2025-10-11 05:33:20] 2025-10-11 05:32:47,969 | INFO     | task id: 46676269
[2025-10-11 05:33:20] 2025-10-11 05:32:47,969 | INFO     | errors: (none)
[2025-10-11 05:33:20] 2025-10-11 05:32:47,969 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-11 05:33:20] 2025-10-11 05:32:47,969 | INFO     | pilot state: finished 
[2025-10-11 05:33:20] 2025-10-11 05:32:47,969 | INFO     | transexitcode: 0
[2025-10-11 05:33:20] 2025-10-11 05:32:47,969 | INFO     | exeerrorcode: 0
[2025-10-11 05:33:20] 2025-10-11 05:32:47,969 | INFO     | exeerrordiag: 
[2025-10-11 05:33:20] 2025-10-11 05:32:47,969 | INFO     | exitcode: 0
[2025-10-11 05:33:20] 2025-10-11 05:32:47,969 | INFO     | exitmsg: OK
[2025-10-11 05:33:20] 2025-10-11 05:32:47,969 | INFO     | cpuconsumptiontime: 33921 s
[2025-10-11 05:33:20] 2025-10-11 05:32:47,969 | INFO     | nevents: 400
[2025-10-11 05:33:20] 2025-10-11 05:32:47,969 | INFO     | neventsw: 0
[2025-10-11 05:33:20] 2025-10-11 05:32:47,969 | INFO     | pid: 480506
[2025-10-11 05:33:20] 2025-10-11 05:32:47,969 | INFO     | pgrp: 480506
[2025-10-11 05:33:20] 2025-10-11 05:32:47,970 | INFO     | corecount: 12
[2025-10-11 05:33:20] 2025-10-11 05:32:47,970 | INFO     | event service: False
[2025-10-11 05:33:20] 2025-10-11 05:32:47,970 | INFO     | sizes: {0: 2348857, 7: 2349119, 11: 2349147, 3253: 2374744, 3254: 2383742, 3257: 2383798, 3267: 2384152}
[2025-10-11 05:33:20] 2025-10-11 05:32:47,970 | INFO     | --------------------------------------------------
[2025-10-11 05:33:20] 2025-10-11 05:32:47,970 | INFO     | 
[2025-10-11 05:33:20] 2025-10-11 05:32:47,970 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2025-10-11 05:33:20] 2025-10-11 05:32:48,001 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-11 05:33:20] 2025-10-11 05:32:48,002 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-11 05:33:20] 2025-10-11 05:32:48,002 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-11 05:33:20] 2025-10-11 05:32:48,002 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-11 05:33:20] 2025-10-11 05:32:48,002 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-11 05:33:20] 2025-10-11 05:32:48,002 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-11 05:33:20] 2025-10-11 05:32:48,002 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-11 05:33:20] 2025-10-11 05:32:48,003 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-11 05:33:20] 2025-10-11 05:32:48,003 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-11 05:33:20] 2025-10-11 05:32:48,003 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-11 05:33:20] 2025-10-11 05:32:48,003 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-11 05:33:20] 2025-10-11 05:32:48,003 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-11 05:33:20] 2025-10-11 05:32:48,003 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-11 05:33:20] 2025-10-11 05:32:48,003 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-11 05:33:20] 2025-10-11 05:32:48,003 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-11 05:33:20] 2025-10-11 05:32:48,003 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-11 05:33:20] 2025-10-11 05:32:48,003 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-11 05:33:20] 2025-10-11 05:32:48,004 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-11 05:33:20] 2025-10-11 05:32:48,004 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-11 05:33:20] 2025-10-11 05:32:48,004 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-11 05:33:20] 2025-10-11 05:32:48,004 | INFO     | job 6837707430 has completed (purged errors)
[2025-10-11 05:33:20] 2025-10-11 05:32:48,004 | INFO     | overall cleanup function is called
[2025-10-11 05:33:20] 2025-10-11 05:32:49,011 | INFO     | --- collectZombieJob: --- 10, [480506]
[2025-10-11 05:33:20] 2025-10-11 05:32:49,011 | INFO     | zombie collector waiting for pid 480506
[2025-10-11 05:33:20] 2025-10-11 05:32:49,012 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-11 05:33:20] 2025-10-11 05:32:49,012 | INFO     | collected zombie processes
[2025-10-11 05:33:20] 2025-10-11 05:32:49,012 | INFO     | will attempt to kill all subprocesses of pid=480506
[2025-10-11 05:33:20] 2025-10-11 05:32:49,838 | INFO     | process IDs to be killed: [480506] (in reverse order)
[2025-10-11 05:33:20] 2025-10-11 05:32:50,111 | WARNING  | found no corresponding commands to process id(s)
[2025-10-11 05:33:20] 2025-10-11 05:32:50,112 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-11 05:33:20] 2025-10-11 05:32:50,140 | INFO     | did not find any defunct processes belonging to 480506
[2025-10-11 05:33:20] 2025-10-11 05:32:50,167 | INFO     | did not find any defunct processes belonging to 480506
[2025-10-11 05:33:20] 2025-10-11 05:32:50,167 | INFO     | ready for new job
[2025-10-11 05:33:20] 2025-10-11 05:32:50,167 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-11 05:33:20] 2025-10-11 05:32:50,170 | INFO     | ***************************************
[2025-10-11 05:33:20] 2025-10-11 05:32:50,170 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-11 05:33:20] 2025-10-11 05:32:50,170 | INFO     | ***************************************
[2025-10-11 05:33:20] 2025-10-11 05:32:50,170 | INFO     | 
[2025-10-11 05:33:20] 2025-10-11 05:32:50,209 | INFO     | architecture information:
[2025-10-11 05:33:20] 2025-10-11 05:32:50,210 | INFO     | executing command: cat /etc/os-release
[2025-10-11 05:33:20] 2025-10-11 05:32:50,235 | INFO     | cat /etc/os-release:
[2025-10-11 05:33:20] NAME="CentOS Linux"
[2025-10-11 05:33:20] VERSION="7 (Core)"
[2025-10-11 05:33:20] ID="centos"
[2025-10-11 05:33:20] ID_LIKE="rhel fedora"
[2025-10-11 05:33:20] VERSION_ID="7"
[2025-10-11 05:33:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-11 05:33:20] ANSI_COLOR="0;31"
[2025-10-11 05:33:20] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-11 05:33:20] HOME_URL="https://www.centos.org/"
[2025-10-11 05:33:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-11 05:33:20] 
[2025-10-11 05:33:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-11 05:33:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-11 05:33:20] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-11 05:33:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-11 05:33:20] 
[2025-10-11 05:33:20] 2025-10-11 05:32:50,236 | INFO     | ***************************************
[2025-10-11 05:33:20] 2025-10-11 05:32:50,739 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2025-10-11 05:33:20] 2025-10-11 05:32:50,769 | INFO     | sufficient remaining disk space (1726025302016 B)
[2025-10-11 05:33:20] 2025-10-11 05:32:50,769 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-11 05:33:20] 2025-10-11 05:32:50,769 | INFO     | current server update state: UPDATING_FINAL
[2025-10-11 05:33:20] 2025-10-11 05:32:50,770 | INFO     | update_server=False
[2025-10-11 05:33:20] 2025-10-11 05:32:50,770 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-11 05:33:20] 2025-10-11 05:32:50,770 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-11 05:33:20] 2025-10-11 05:32:50,775 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-11 05:33:20] 2025-10-11 05:32:50,775 | INFO     | aborting loop
[2025-10-11 05:33:20] 2025-10-11 05:32:51,229 | INFO     | all job control threads have been joined
[2025-10-11 05:33:20] 2025-10-11 05:32:51,522 | INFO     | all data control threads have been joined
[2025-10-11 05:33:20] 2025-10-11 05:32:51,709 | INFO     | all payload control threads have been joined
[2025-10-11 05:33:20] 2025-10-11 05:32:51,775 | INFO     | [job] retrieve thread has finished
[2025-10-11 05:33:20] 2025-10-11 05:32:51,778 | INFO     | [job] job monitor thread has finished
[2025-10-11 05:33:20] 2025-10-11 05:32:51,858 | INFO     | [payload] failed_post thread has finished
[2025-10-11 05:33:20] 2025-10-11 05:32:52,120 | INFO     | [job] validate thread has finished
[2025-10-11 05:33:20] 2025-10-11 05:32:52,184 | INFO     | [data] copytool_in thread has finished
[2025-10-11 05:33:20] 2025-10-11 05:32:52,234 | INFO     | [job] control thread has finished
[2025-10-11 05:33:20] 2025-10-11 05:32:52,238 | INFO     | [job] create_data_payload thread has finished
[2025-10-11 05:33:20] 2025-10-11 05:32:52,409 | INFO     | [payload] validate_post thread has finished
[2025-10-11 05:33:20] 2025-10-11 05:32:52,490 | INFO     | [payload] validate_pre thread has finished
[2025-10-11 05:33:20] 2025-10-11 05:32:52,504 | INFO     | [payload] execute_payloads thread has finished
[2025-10-11 05:33:20] 2025-10-11 05:32:52,526 | INFO     | [data] control thread has finished
[2025-10-11 05:33:20] 2025-10-11 05:32:52,571 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-11 05:33:20] 2025-10-11 05:32:52,714 | INFO     | [payload] control thread has finished
[2025-10-11 05:33:20] 2025-10-11 05:32:52,781 | INFO     | [data] copytool_out thread has finished
[2025-10-11 05:33:20] 2025-10-11 05:32:52,866 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-11 05:33:20] 2025-10-11 05:32:53,073 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-11 05:33:20] 2025-10-11 05:32:53,574 | INFO     | [job] queue monitor thread has finished
[2025-10-11 05:33:20] 2025-10-11 05:32:56,875 | INFO     | [data] queue_monitor thread has finished
[2025-10-11 05:33:20] 2025-10-11 05:33:06,646 | INFO     | [monitor] cgroup control has ended
[2025-10-11 05:33:20] 2025-10-11 05:33:07,842 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140576998029120)>', '<ExcThread(monitor, started 140576401901312)>']
[2025-10-11 05:33:20] 2025-10-11 05:33:12,859 | INFO     | all workflow threads have been joined
[2025-10-11 05:33:20] 2025-10-11 05:33:12,859 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-11 05:33:20] 2025-10-11 05:33:12,860 | INFO     | traces error code: 0
[2025-10-11 05:33:20] 2025-10-11 05:33:12,860 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-11 05:33:20] 2025-10-11 05:33:20,316 | INFO     | PID=472332 has CPU usage=10.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-11 05:33:20] 2025-10-11 05:33:20,317 | INFO     | .. there are 17 such processes running
[2025-10-11 05:33:20] 2025-10-11 05:33:20,318 | INFO     | found 0 job(s) in 20 queues
[2025-10-11 05:33:20] 2025-10-11 05:33:20,319 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-11 05:33:20] 2025-10-11 05:33:20,319 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-11 05:33:20] 2025-10-11 05:33:20,319 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-11 05:33:20] 2025-10-11 05:33:20,319 | INFO     | [monitor] control thread has ended
[2025-10-11 05:33:20] 2025-10-11 05:33:20,500 [wrapper] ==== pilot stdout END ====
[2025-10-11 05:33:20] 2025-10-11 05:33:20,504 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-11 05:33:20] 2025-10-11 05:33:20,510 [wrapper] pilotpid: 472332
[2025-10-11 05:33:20] 2025-10-11 05:33:20,514 [wrapper] Pilot exit status: 0
[2025-10-11 05:33:20] 2025-10-11 05:33:20,528 [wrapper] pandaids: 6837707430
[2025-10-11 05:33:20] 2025-10-11 05:33:20,703 [wrapper] cleanup supervisor_pilot  815896 472333
[2025-10-11 05:33:20] 2025-10-11 05:33:20,707 [wrapper] Test setup, not cleaning
[2025-10-11 05:33:20] 2025-10-11 05:33:20,711 [wrapper] apfmon messages muted
[2025-10-11 05:33:20] 2025-10-11 05:33:20,715 [wrapper] ==== wrapper stdout END ====
[2025-10-11 05:33:20] 2025-10-11 05:33:20,719 [wrapper] ==== wrapper stderr END ====
[2025-10-11 05:33:20]  *** Error codes and diagnostics ***
[2025-10-11 05:33:20]     "exeErrorCode": 0,
[2025-10-11 05:33:20]     "exeErrorDiag": "",
[2025-10-11 05:33:20]     "pilotErrorCode": 0,
[2025-10-11 05:33:20]     "pilotErrorDiag": "",
[2025-10-11 05:33:20]  *** Listing of results directory ***
[2025-10-11 05:33:20] total 413216
[2025-10-11 05:33:20] -rw-r--r-- 1 boinc boinc    557409 Oct 10 19:04 pilot3.tar.gz
[2025-10-11 05:33:20] -rw-r--r-- 1 boinc boinc      5112 Oct 10 19:12 queuedata.json
[2025-10-11 05:33:20] -rwx------ 1 boinc boinc     36292 Oct 10 19:13 runpilot2-wrapper.sh
[2025-10-11 05:33:20] -rw-r--r-- 1 boinc boinc       100 Oct 11 04:37 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-11 05:33:20] -rwxr-xr-x 1 boinc boinc      7986 Oct 11 04:37 run_atlas
[2025-10-11 05:33:20] -rw-r--r-- 1 boinc boinc       105 Oct 11 04:37 job.xml
[2025-10-11 05:33:20] -rw-r--r-- 2 boinc boinc 222999879 Oct 11 04:37 EVNT.46676267._001768.pool.root.1
[2025-10-11 05:33:20] -rw-r--r-- 2 boinc boinc     15120 Oct 11 04:37 start_atlas.sh
[2025-10-11 05:33:20] drwxrwx--x 2 boinc boinc      4096 Oct 11 04:37 shared
[2025-10-11 05:33:20] -rw-r--r-- 2 boinc boinc    569682 Oct 11 04:37 input.tar.gz
[2025-10-11 05:33:20] -rw-r--r-- 1 boinc boinc      9395 Oct 11 04:37 init_data.xml
[2025-10-11 05:33:20] -rw-r--r-- 1 boinc boinc         0 Oct 11 04:37 boinc_setup_complete
[2025-10-11 05:33:20] -rw-r--r-- 1 boinc boinc         0 Oct 11 04:37 boinc_lockfile
[2025-10-11 05:33:20] -rw-r--r-- 1 boinc boinc      2550 Oct 11 04:37 pandaJob.out
[2025-10-11 05:33:20] -rw------- 1 boinc boinc    975517 Oct 11 04:37 agis_schedconf.cvmfs.json
[2025-10-11 05:33:20] -rw------- 1 boinc boinc   1560580 Oct 11 04:38 agis_ddmendpoints.agis.ALL.json
[2025-10-11 05:33:20] drwx------ 5 boinc boinc      4096 Oct 11 04:38 pilot3
[2025-10-11 05:33:20] -rw------- 1 boinc boinc 194517291 Oct 11 05:31 HITS.46676269._043680.pool.root.1
[2025-10-11 05:33:20] -rw-r--r-- 1 boinc boinc       529 Oct 11 05:32 boinc_task_state.xml
[2025-10-11 05:33:20] -rw------- 1 boinc boinc      1028 Oct 11 05:32 memory_monitor_summary.json
[2025-10-11 05:33:20] -rw------- 1 boinc boinc    373021 Oct 11 05:32 log.46676269._043680.job.log.tgz.1
[2025-10-11 05:33:20] -rw------- 1 boinc boinc      7743 Oct 11 05:32 heartbeat.json
[2025-10-11 05:33:20] -rw-r--r-- 1 boinc boinc      8192 Oct 11 05:33 boinc_mmap_file
[2025-10-11 05:33:20] -rw-r--r-- 1 boinc boinc        27 Oct 11 05:33 wrapper_checkpoint.txt
[2025-10-11 05:33:20] -rw------- 1 boinc boinc        95 Oct 11 05:33 pilot_heartbeat.json
[2025-10-11 05:33:20] -rw------- 1 boinc boinc       823 Oct 11 05:33 pilotlog.txt
[2025-10-11 05:33:20] -rw------- 1 boinc boinc    483094 Oct 11 05:33 log.46676269._043680.job.log.1
[2025-10-11 05:33:20] -rw------- 1 boinc boinc       357 Oct 11 05:33 output.list
[2025-10-11 05:33:20] -rw-r--r-- 1 boinc boinc       620 Oct 11 05:33 runtime_log
[2025-10-11 05:33:20] -rw------- 1 boinc boinc    870400 Oct 11 05:33 result.tar.gz
[2025-10-11 05:33:20] -rw------- 1 boinc boinc       643 Oct 11 05:33 wWYLDmwjXR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmHCeNDmKvfLqn.diag
[2025-10-11 05:33:20] -rw-r--r-- 1 boinc boinc      8658 Oct 11 05:33 runtime_log.err
[2025-10-11 05:33:20] -rw-r--r-- 1 boinc boinc     22005 Oct 11 05:33 stderr.txt
[2025-10-11 05:33:20] HITS file was successfully produced:
[2025-10-11 05:33:20] -rw------- 1 boinc boinc 194517291 Oct 11 05:31 shared/HITS.pool.root.1
[2025-10-11 05:33:20]  *** Contents of shared directory: ***
[2025-10-11 05:33:20] total 409172
[2025-10-11 05:33:20] -rw-r--r-- 2 boinc boinc 222999879 Oct 11 04:37 ATLAS.root_0
[2025-10-11 05:33:20] -rw-r--r-- 2 boinc boinc     15120 Oct 11 04:37 start_atlas.sh
[2025-10-11 05:33:20] -rw-r--r-- 2 boinc boinc    569682 Oct 11 04:37 input.tar.gz
[2025-10-11 05:33:20] -rw------- 1 boinc boinc 194517291 Oct 11 05:31 HITS.pool.root.1
[2025-10-11 05:33:20] -rw------- 1 boinc boinc    870400 Oct 11 05:33 result.tar.gz
05:33:22 (467615): run_atlas exited; CPU time 34116.754137
05:33:22 (467615): called boinc_finish(0)

</stderr_txt>
]]>

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