Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:05:01 (2052362): wrapper (7.7.26015): starting
00:05:01 (2052362): wrapper: running run_atlas (--nthreads 9)
[2025-10-11 00:05:01] Arguments: --nthreads 9
[2025-10-11 00:05:01] Threads: 9
[2025-10-11 00:05:01] Checking for CVMFS
[2025-10-11 00:05:03] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 00:05:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 00:05:03] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 00:05:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 00:05:06] 2.13.2.0 239285 127319 215504 151571 3 85 18231221 32935937 29752 16776704 0 86925276 99.658 81315140 30349 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-11 00:05:06] CVMFS is ok
[2025-10-11 00:05:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 00:05:06] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 00:05:06] Further information can be found at the LHC@home message board.
[2025-10-11 00:05:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 00:05:06] Checking for apptainer binary...
[2025-10-11 00:05:06] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 00:05:06] Running /usr/bin/apptainer --version
[2025-10-11 00:05:06] apptainer version 1.4.3-1.el9
[2025-10-11 00:05:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 00:05:07] c-6-6.aglt2.org
[2025-10-11 00:05:07] apptainer works
[2025-10-11 00:05:07] Set ATHENA_PROC_NUMBER=9
[2025-10-11 00:05:07] Set ATHENA_CORE_NUMBER=9
[2025-10-11 00:05:07] Starting ATLAS job with PandaID=6837932740
[2025-10-11 00:05:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
01:30:27 (2490215): wrapper (7.7.26015): starting
01:30:27 (2490215): wrapper: running run_atlas (--nthreads 8)
[2025-10-11 01:30:27] Arguments: --nthreads 8
[2025-10-11 01:30:27] Threads: 8
[2025-10-11 01:30:27] This job has been restarted, cleaning up previous attempt
[2025-10-11 01:30:27] Checking for CVMFS
[2025-10-11 01:30:27] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 01:30:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 01:30:27] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 01:30:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 01:30:27] 2.13.2.0 239285 127404 217472 151573 2 161 18753458 32935936 30103 16776704 0 87319860 99.658 81379590 30353 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-11 01:30:27] CVMFS is ok
[2025-10-11 01:30:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 01:30:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 01:30:27] Further information can be found at the LHC@home message board.
[2025-10-11 01:30:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 01:30:27] Checking for apptainer binary...
[2025-10-11 01:30:27] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 01:30:27] Running /usr/bin/apptainer --version
[2025-10-11 01:30:28] apptainer version 1.4.3-1.el9
[2025-10-11 01:30:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 01:30:28] c-6-6.aglt2.org
[2025-10-11 01:30:28] apptainer works
[2025-10-11 01:30:28] Set ATHENA_PROC_NUMBER=8
[2025-10-11 01:30:28] Set ATHENA_CORE_NUMBER=8
[2025-10-11 01:30:28] Starting ATLAS job with PandaID=6837932740
[2025-10-11 01:30:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-11 11:09:16]  *** The last 200 lines of the pilot log: ***
[2025-10-11 11:09:16] 2025-10-11 14:30:45,552 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2600.147899999999
[2025-10-11 11:09:16] 2025-10-11 14:30:45,577 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6837932740/memory_monitor_summary.json (trf name=prmon)
[2025-10-11 11:09:16] 2025-10-11 14:30:45,577 | INFO     | extracted standard info from prmon json
[2025-10-11 11:09:16] 2025-10-11 14:30:45,578 | INFO     | extracted standard memory fields from prmon json
[2025-10-11 11:09:16] 2025-10-11 14:30:45,578 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-11 11:09:16] 2025-10-11 14:30:45,578 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-11 11:09:16] 2025-10-11 14:30:45,578 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-11 11:09:16] 2025-10-11 14:30:45,649 | INFO     | fitting pss+swap vs Time
[2025-10-11 11:09:16] 2025-10-11 14:30:45,650 | INFO     | sum of square deviations: 45905095747.5351
[2025-10-11 11:09:16] 2025-10-11 14:30:45,657 | INFO     | sum of deviations: 92563838933.35158
[2025-10-11 11:09:16] 2025-10-11 14:30:45,658 | INFO     | mean x: 1760176839.3119092
[2025-10-11 11:09:16] 2025-10-11 14:30:45,658 | INFO     | mean y: 2116293.325141777
[2025-10-11 11:09:16] 2025-10-11 14:30:45,658 | INFO     | -- intersect: -3547135108.8360653
[2025-10-11 11:09:16] 2025-10-11 14:30:45,658 | INFO     | intersect: -3547135108.8360653
[2025-10-11 11:09:16] 2025-10-11 14:30:45,659 | INFO     | chi2: 3.1645776829003545
[2025-10-11 11:09:16] 2025-10-11 14:30:45,660 | INFO     | sum of square deviations: 44615801453.043846
[2025-10-11 11:09:16] 2025-10-11 14:30:45,668 | INFO     | sum of deviations: 124881895247.26509
[2025-10-11 11:09:16] 2025-10-11 14:30:45,668 | INFO     | mean x: 1760176686.8148854
[2025-10-11 11:09:16] 2025-10-11 14:30:45,668 | INFO     | mean y: 2120092.8377862596
[2025-10-11 11:09:16] 2025-10-11 14:30:45,668 | INFO     | -- intersect: -4924703890.159344
[2025-10-11 11:09:16] 2025-10-11 14:30:45,668 | INFO     | intersect: -4924703890.159344
[2025-10-11 11:09:16] 2025-10-11 14:30:45,669 | INFO     | chi2: 2.4929883167701656
[2025-10-11 11:09:16] 2025-10-11 14:30:45,669 | INFO     | current chi2=2.4929883167701656 (change=21.22208501181975 %)
[2025-10-11 11:09:16] 2025-10-11 14:30:45,669 | INFO     | right removable region: 523
[2025-10-11 11:09:16] 2025-10-11 14:30:45,670 | INFO     | sum of square deviations: 44615538963.84737
[2025-10-11 11:09:16] 2025-10-11 14:30:45,678 | INFO     | sum of deviations: -5845963049.503822
[2025-10-11 11:09:16] 2025-10-11 14:30:45,678 | INFO     | mean x: 1760176991.8244274
[2025-10-11 11:09:16] 2025-10-11 14:30:45,679 | INFO     | mean y: 2127907.570610687
[2025-10-11 11:09:16] 2025-10-11 14:30:45,679 | INFO     | -- intersect: 232763464.01049763
[2025-10-11 11:09:16] 2025-10-11 14:30:45,679 | INFO     | intersect: 232763464.01049763
[2025-10-11 11:09:16] 2025-10-11 14:30:45,680 | INFO     | chi2: 1.184649275896441
[2025-10-11 11:09:16] 2025-10-11 14:30:45,680 | INFO     | current chi2=1.184649275896441 (change=62.56532799628724 %)
[2025-10-11 11:09:16] 2025-10-11 14:30:45,681 | INFO     | sum of square deviations: 43350386451.66473
[2025-10-11 11:09:16] 2025-10-11 14:30:45,688 | INFO     | sum of deviations: -34895957378.404625
[2025-10-11 11:09:16] 2025-10-11 14:30:45,689 | INFO     | mean x: 1760177144.3352602
[2025-10-11 11:09:16] 2025-10-11 14:30:45,689 | INFO     | mean y: 2131404.7379576107
[2025-10-11 11:09:16] 2025-10-11 14:30:45,689 | INFO     | -- intersect: 1419029191.2352326
[2025-10-11 11:09:16] 2025-10-11 14:30:45,689 | INFO     | intersect: 1419029191.2352326
[2025-10-11 11:09:16] 2025-10-11 14:30:45,690 | INFO     | chi2: 1.0197858879625121
[2025-10-11 11:09:16] 2025-10-11 14:30:45,690 | INFO     | current chi2=1.0197858879625121 (change=13.916641092712817 %)
[2025-10-11 11:09:16] 2025-10-11 14:30:45,690 | INFO     | left removable region: 20
[2025-10-11 11:09:16] 2025-10-11 14:30:45,691 | INFO     | sum of square deviations: 39463661030.21865
[2025-10-11 11:09:16] 2025-10-11 14:30:45,699 | INFO     | sum of deviations: 10319868651.12725
[2025-10-11 11:09:16] 2025-10-11 14:30:45,699 | INFO     | mean x: 1760177266.335984
[2025-10-11 11:09:16] 2025-10-11 14:30:45,699 | INFO     | mean y: 2134099.9045725646
[2025-10-11 11:09:16] 2025-10-11 14:30:45,699 | INFO     | -- intersect: -458157665.154381
[2025-10-11 11:09:16] 2025-10-11 14:30:45,699 | INFO     | intersect: -458157665.154381
[2025-10-11 11:09:16] 2025-10-11 14:30:45,700 | INFO     | chi2: 0.2891034427029684
[2025-10-11 11:09:16] 2025-10-11 14:30:45,700 | INFO     | -- intersect: -458157665.154381
[2025-10-11 11:09:16] 2025-10-11 14:30:45,700 | INFO     | current memory leak: 0.26 B/s (using 503 data points, chi2=0.29)
[2025-10-11 11:09:16] 2025-10-11 14:30:45,701 | INFO     | could have reported an average CPU frequency of 2600 MHz (21 samples)
[2025-10-11 11:09:16] 2025-10-11 14:30:45,701 | INFO     | ..............................
[2025-10-11 11:09:16] 2025-10-11 14:30:45,702 | INFO     | . Timing measurements:
[2025-10-11 11:09:16] 2025-10-11 14:30:45,702 | INFO     | . get job = 0 s
[2025-10-11 11:09:16] 2025-10-11 14:30:45,702 | INFO     | . initial setup = 1 s
[2025-10-11 11:09:16] 2025-10-11 14:30:45,702 | INFO     | . payload setup = 19 s
[2025-10-11 11:09:16] 2025-10-11 14:30:45,702 | INFO     | . stage-in = 0 s
[2025-10-11 11:09:16] 2025-10-11 14:30:45,702 | INFO     | . payload execution = 32284 s
[2025-10-11 11:09:16] 2025-10-11 14:30:45,702 | INFO     | . stage-out = 9 s
[2025-10-11 11:09:16] 2025-10-11 14:30:45,702 | INFO     | . log creation = 1 s
[2025-10-11 11:09:16] 2025-10-11 14:30:45,702 | INFO     | ..............................
[2025-10-11 11:09:16] 2025-10-11 14:30:46,308 | INFO     | 
[2025-10-11 11:09:16] 2025-10-11 14:30:46,313 | INFO     | job summary report
[2025-10-11 11:09:16] 2025-10-11 14:30:46,313 | INFO     | --------------------------------------------------
[2025-10-11 11:09:16] 2025-10-11 14:30:46,313 | INFO     | PanDA job id: 6837932740
[2025-10-11 11:09:16] 2025-10-11 14:30:46,313 | INFO     | task id: 46676269
[2025-10-11 11:09:16] 2025-10-11 14:30:46,313 | INFO     | errors: (none)
[2025-10-11 11:09:16] 2025-10-11 14:30:46,313 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-11 11:09:16] 2025-10-11 14:30:46,313 | INFO     | pilot state: finished 
[2025-10-11 11:09:16] 2025-10-11 14:30:46,314 | INFO     | transexitcode: 0
[2025-10-11 11:09:16] 2025-10-11 14:30:46,314 | INFO     | exeerrorcode: 0
[2025-10-11 11:09:16] 2025-10-11 14:30:46,314 | INFO     | exeerrordiag: 
[2025-10-11 11:09:16] 2025-10-11 14:30:46,314 | INFO     | exitcode: 0
[2025-10-11 11:09:16] 2025-10-11 14:30:46,314 | INFO     | exitmsg: OK
[2025-10-11 11:09:16] 2025-10-11 14:30:46,314 | INFO     | cpuconsumptiontime: 50305 s
[2025-10-11 11:09:16] 2025-10-11 14:30:46,314 | INFO     | nevents: 400
[2025-10-11 11:09:16] 2025-10-11 14:30:46,314 | INFO     | neventsw: 0
[2025-10-11 11:09:16] 2025-10-11 14:30:46,314 | INFO     | pid: 2512924
[2025-10-11 11:09:16] 2025-10-11 14:30:46,315 | INFO     | pgrp: 2512924
[2025-10-11 11:09:16] 2025-10-11 14:30:46,315 | INFO     | corecount: 8
[2025-10-11 11:09:16] 2025-10-11 14:30:46,315 | INFO     | event service: False
[2025-10-11 11:09:16] 2025-10-11 14:30:46,315 | INFO     | sizes: {0: 2348028, 1: 2348713, 2: 2348912, 13: 2348912, 17: 2349230, 23: 2349258, 32309: 2387455, 32321: 2396453, 32322: 2396509, 32358: 2396703}
[2025-10-11 11:09:16] 2025-10-11 14:30:46,315 | INFO     | --------------------------------------------------
[2025-10-11 11:09:16] 2025-10-11 14:30:46,315 | INFO     | 
[2025-10-11 11:09:16] 2025-10-11 14:30:46,315 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-10-11 11:09:16] 2025-10-11 14:30:46,335 | INFO     | time since job start (32391s) is within the limit (172800.0s)
[2025-10-11 11:09:16] 2025-10-11 14:30:46,508 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-11 11:09:16] 2025-10-11 14:30:46,508 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-11 11:09:16] 2025-10-11 14:30:46,508 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-11 11:09:16] 2025-10-11 14:30:46,508 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-11 11:09:16] 2025-10-11 14:30:46,509 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-11 11:09:16] 2025-10-11 14:30:46,509 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-11 11:09:16] 2025-10-11 14:30:46,509 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-11 11:09:16] 2025-10-11 14:30:46,509 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-11 11:09:16] 2025-10-11 14:30:46,509 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-11 11:09:16] 2025-10-11 14:30:46,509 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-11 11:09:16] 2025-10-11 14:30:46,509 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-11 11:09:16] 2025-10-11 14:30:46,509 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-11 11:09:16] 2025-10-11 14:30:46,509 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-11 11:09:16] 2025-10-11 14:30:46,510 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-11 11:09:16] 2025-10-11 14:30:46,510 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-11 11:09:16] 2025-10-11 14:30:46,510 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-11 11:09:16] 2025-10-11 14:30:46,510 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-11 11:09:16] 2025-10-11 14:30:46,510 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-11 11:09:16] 2025-10-11 14:30:46,510 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-11 11:09:16] 2025-10-11 14:30:46,510 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-11 11:09:16] 2025-10-11 14:30:46,510 | INFO     | job 6837932740 has completed (purged errors)
[2025-10-11 11:09:16] 2025-10-11 14:30:46,511 | INFO     | overall cleanup function is called
[2025-10-11 11:09:16] 2025-10-11 14:30:47,519 | INFO     | --- collectZombieJob: --- 10, [2512924]
[2025-10-11 11:09:16] 2025-10-11 14:30:47,520 | INFO     | zombie collector waiting for pid 2512924
[2025-10-11 11:09:16] 2025-10-11 14:30:47,535 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-11 11:09:16] 2025-10-11 14:30:47,535 | INFO     | collected zombie processes
[2025-10-11 11:09:16] 2025-10-11 14:30:47,535 | INFO     | will attempt to kill all subprocesses of pid=2512924
[2025-10-11 11:09:16] 2025-10-11 14:30:50,214 | INFO     | process IDs to be killed: [2512924] (in reverse order)
[2025-10-11 11:09:16] 2025-10-11 14:30:50,576 | WARNING  | found no corresponding commands to process id(s)
[2025-10-11 11:09:16] 2025-10-11 14:30:50,577 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-11 11:09:16] 2025-10-11 14:30:50,694 | INFO     | did not find any defunct processes belonging to 2512924
[2025-10-11 11:09:16] 2025-10-11 14:30:50,837 | INFO     | did not find any defunct processes belonging to 2512924
[2025-10-11 11:09:16] 2025-10-11 14:30:50,838 | INFO     | ready for new job
[2025-10-11 11:09:16] 2025-10-11 14:30:50,838 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-11 11:09:16] 2025-10-11 14:30:50,842 | INFO     | ***************************************
[2025-10-11 11:09:16] 2025-10-11 14:30:50,842 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-11 11:09:16] 2025-10-11 14:30:50,842 | INFO     | ***************************************
[2025-10-11 11:09:16] 2025-10-11 14:30:50,842 | INFO     | 
[2025-10-11 11:09:16] 2025-10-11 14:30:50,885 | INFO     | architecture information:
[2025-10-11 11:09:16] 2025-10-11 14:30:50,919 | INFO     | executing command: cat /etc/os-release
[2025-10-11 11:09:16] 2025-10-11 14:30:51,094 | INFO     | cat /etc/os-release:
[2025-10-11 11:09:16] NAME="CentOS Linux"
[2025-10-11 11:09:16] VERSION="7 (Core)"
[2025-10-11 11:09:16] ID="centos"
[2025-10-11 11:09:16] ID_LIKE="rhel fedora"
[2025-10-11 11:09:16] VERSION_ID="7"
[2025-10-11 11:09:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-11 11:09:16] ANSI_COLOR="0;31"
[2025-10-11 11:09:16] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-11 11:09:16] HOME_URL="https://www.centos.org/"
[2025-10-11 11:09:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-11 11:09:16] 
[2025-10-11 11:09:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-11 11:09:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-11 11:09:16] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-11 11:09:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-11 11:09:16] 
[2025-10-11 11:09:16] 2025-10-11 14:30:51,094 | INFO     | ***************************************
[2025-10-11 11:09:16] 2025-10-11 14:30:51,608 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-10-11 11:09:16] 2025-10-11 14:30:51,848 | INFO     | sufficient remaining disk space (75673632768 B)
[2025-10-11 11:09:16] 2025-10-11 14:30:51,848 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-11 11:09:16] 2025-10-11 14:30:51,848 | INFO     | current server update state: UPDATING_FINAL
[2025-10-11 11:09:16] 2025-10-11 14:30:51,848 | INFO     | update_server=False
[2025-10-11 11:09:16] 2025-10-11 14:30:51,849 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-11 11:09:16] 2025-10-11 14:30:51,871 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-11 11:09:16] 2025-10-11 14:30:52,191 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-11 11:09:16] 2025-10-11 14:30:52,192 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-11 11:09:16] 2025-10-11 14:30:52,192 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-11 11:09:16] 2025-10-11 14:30:52,192 | INFO     | will abort loop
[2025-10-11 11:09:16] 2025-10-11 14:30:52,694 | INFO     | all job control threads have been joined
[2025-10-11 11:09:16] 2025-10-11 14:30:52,799 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-11 11:09:16] 2025-10-11 14:30:52,828 | INFO     | all data control threads have been joined
[2025-10-11 11:09:16] 2025-10-11 14:30:52,855 | INFO     | [job] retrieve thread has finished
[2025-10-11 11:09:16] 2025-10-11 14:30:52,877 | INFO     | [job] queue monitor thread has finished
[2025-10-11 11:09:16] 2025-10-11 14:30:52,889 | INFO     | all payload control threads have been joined
[2025-10-11 11:09:16] 2025-10-11 14:30:53,059 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-11 11:09:16] 2025-10-11 14:30:53,198 | INFO     | [job] job monitor thread has finished
[2025-10-11 11:09:16] 2025-10-11 14:30:53,696 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-11 11:09:16] 2025-10-11 14:30:53,706 | INFO     | [job] control thread has finished
[2025-10-11 11:09:16] 2025-10-11 14:30:53,715 | INFO     | [payload] execute_payloads thread has finished
[2025-10-11 11:09:16] 2025-10-11 14:30:53,835 | INFO     | [data] control thread has finished
[2025-10-11 11:09:16] 2025-10-11 14:30:53,885 | INFO     | [job] validate thread has finished
[2025-10-11 11:09:16] 2025-10-11 14:30:53,896 | INFO     | [payload] control thread has finished
[2025-10-11 11:09:16] 2025-10-11 14:30:53,913 | INFO     | [payload] validate_pre thread has finished
[2025-10-11 11:09:16] 2025-10-11 14:30:53,922 | INFO     | [payload] validate_post thread has finished
[2025-10-11 11:09:16] 2025-10-11 14:30:53,926 | INFO     | [data] copytool_in thread has finished
[2025-10-11 11:09:16] 2025-10-11 14:30:53,932 | INFO     | [payload] failed_post thread has finished
[2025-10-11 11:09:16] 2025-10-11 14:30:54,075 | INFO     | [job] create_data_payload thread has finished
[2025-10-11 11:09:16] 2025-10-11 14:30:54,807 | INFO     | [data] copytool_out thread has finished
[2025-10-11 11:09:16] 2025-10-11 14:30:57,123 | INFO     | [data] queue_monitor thread has finished
[2025-10-11 11:09:16] 2025-10-11 14:30:58,835 | INFO     | [monitor] cgroup control has ended
[2025-10-11 11:09:16] 2025-10-11 14:31:00,640 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140582279116608)>', '<ExcThread(monitor, started 140581653178112)>']
[2025-10-11 11:09:16] 2025-10-11 14:31:02,102 [wrapper] supervise_pilot (15 min periods counter: 37)
[2025-10-11 11:09:16] 2025-10-11 14:31:05,666 | INFO     | all workflow threads have been joined
[2025-10-11 11:09:16] 2025-10-11 14:31:05,667 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-11 11:09:16] 2025-10-11 14:31:05,667 | INFO     | traces error code: 0
[2025-10-11 11:09:16] 2025-10-11 14:31:05,667 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-11 11:09:16] 2025-10-11 14:31:21,727 | INFO     | PID=2497758 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-11 11:09:16] 2025-10-11 14:31:21,731 | INFO     | .. there are 41 such processes running
[2025-10-11 11:09:16] 2025-10-11 14:31:21,738 | INFO     | found 0 job(s) in 20 queues
[2025-10-11 11:09:16] 2025-10-11 14:31:21,738 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-11 11:09:16] 2025-10-11 14:31:21,738 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-11 11:09:16] 2025-10-11 14:31:21,738 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-11 11:09:16] 2025-10-11 14:31:21,738 | INFO     | [monitor] control thread has ended
[2025-10-11 11:09:16] 2025-10-11 14:31:22,695 [wrapper] ==== pilot stdout END ====
[2025-10-11 11:09:16] 2025-10-11 14:31:22,809 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-11 11:09:16] 2025-10-11 14:31:22,895 [wrapper] pilotpid: 2497758
[2025-10-11 11:09:16] 2025-10-11 14:31:22,933 [wrapper] Pilot exit status: 0
[2025-10-11 11:09:16] 2025-10-11 14:31:23,176 [wrapper] pandaids: 6837932740 6837932740
[2025-10-11 11:09:16] 2025-10-11 14:31:23,869 [wrapper] cleanup supervisor_pilot   52894 2497759
[2025-10-11 11:09:16] 2025-10-11 14:31:23,948 [wrapper] Test setup, not cleaning
[2025-10-11 11:09:16] 2025-10-11 14:31:23,966 [wrapper] apfmon messages muted
[2025-10-11 11:09:16] 2025-10-11 14:31:24,010 [wrapper] ==== wrapper stdout END ====
[2025-10-11 11:09:16] 2025-10-11 14:31:24,035 [wrapper] ==== wrapper stderr END ====
[2025-10-11 11:09:16]  *** Error codes and diagnostics ***
[2025-10-11 11:09:16]     "exeErrorCode": 0,
[2025-10-11 11:09:16]     "exeErrorDiag": "",
[2025-10-11 11:09:16]     "pilotErrorCode": 0,
[2025-10-11 11:09:16]     "pilotErrorDiag": "",
[2025-10-11 11:09:16]  *** Listing of results directory ***
[2025-10-11 11:09:16] total 628316
[2025-10-11 11:09:16] drwx------. 5 boincer umatlas      4096 Oct  7 03:00 pilot3
[2025-10-11 11:09:16] -rw-r--r--. 1 boincer umatlas    557409 Oct 10 21:35 pilot3.tar.gz
[2025-10-11 11:09:16] -rwx------. 1 boincer umatlas     36292 Oct 10 22:01 runpilot2-wrapper.sh
[2025-10-11 11:09:16] -rw-r--r--. 1 boincer umatlas      5112 Oct 10 22:01 queuedata.json
[2025-10-11 11:09:16] -rw-r--r--. 1 boincer umatlas       100 Oct 11 00:05 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-11 11:09:16] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 11 00:05 run_atlas
[2025-10-11 11:09:16] -rw-r--r--. 1 boincer umatlas       105 Oct 11 00:05 job.xml
[2025-10-11 11:09:16] -rw-r--r--. 3 boincer umatlas 219687356 Oct 11 00:05 EVNT.46676267._001979.pool.root.1
[2025-10-11 11:09:16] -rw-r--r--. 3 boincer umatlas 219687356 Oct 11 00:05 ATLAS.root_0
[2025-10-11 11:09:16] -rw-r--r--. 2 boincer umatlas     15120 Oct 11 00:05 start_atlas.sh
[2025-10-11 11:09:16] drwxrwx--x. 2 boincer umatlas      4096 Oct 11 00:05 shared
[2025-10-11 11:09:16] -rw-r--r--. 2 boincer umatlas    569680 Oct 11 00:05 input.tar.gz
[2025-10-11 11:09:16] -rw-r--r--. 1 boincer umatlas         0 Oct 11 00:05 boinc_lockfile
[2025-10-11 11:09:16] -rw-r--r--. 1 boincer umatlas      2549 Oct 11 01:30 pandaJob.out
[2025-10-11 11:09:16] -rw-------. 1 boincer umatlas    975533 Oct 11 01:30 agis_schedconf.cvmfs.json
[2025-10-11 11:09:16] -rw-------. 1 boincer umatlas 191884439 Oct 11 10:28 HITS.46676269._049086.pool.root.1
[2025-10-11 11:09:16] -rw-r--r--. 1 boincer umatlas       531 Oct 11 10:28 boinc_task_state.xml
[2025-10-11 11:09:16] -rw-------. 1 boincer umatlas      1052 Oct 11 10:29 memory_monitor_summary.json
[2025-10-11 11:09:16] -rw-------. 1 boincer umatlas   1560580 Oct 11 10:30 agis_ddmendpoints.agis.ALL.json
[2025-10-11 11:09:16] -rw-------. 1 boincer umatlas    662574 Oct 11 10:30 log.46676269._049086.job.log.tgz.1
[2025-10-11 11:09:16] -rw-------. 1 boincer umatlas      7844 Oct 11 10:30 heartbeat.json
[2025-10-11 11:09:16] -rw-------. 1 boincer umatlas        96 Oct 11 10:31 pilot_heartbeat.json
[2025-10-11 11:09:16] -rw-------. 1 boincer umatlas       823 Oct 11 10:31 pilotlog.txt
[2025-10-11 11:09:16] -rw-------. 1 boincer umatlas   3457779 Oct 11 10:31 log.46676269._049086.job.log.1
[2025-10-11 11:09:16] -rw-------. 1 boincer umatlas       357 Oct 11 10:31 output.list
[2025-10-11 11:09:16] -rw-r--r--. 1 boincer umatlas       620 Oct 11 10:31 runtime_log
[2025-10-11 11:09:16] -rw-------. 1 boincer umatlas   4136960 Oct 11 10:31 result.tar.gz
[2025-10-11 11:09:16] -rw-r--r--. 1 boincer umatlas      8774 Oct 11 10:31 runtime_log.err
[2025-10-11 11:09:16] -rw-------. 1 boincer umatlas       783 Oct 11 10:31 g1rNDmj6dR8n9Rq4apOajLDm4fhM0noT9bVof3QYDmoxQMDmLnPNUn.diag
[2025-10-11 11:09:16] -rw-r--r--. 1 boincer umatlas      6659 Oct 11 11:02 init_data.xml
[2025-10-11 11:09:16] -rw-r--r--. 1 boincer umatlas        28 Oct 11 11:09 wrapper_checkpoint.txt
[2025-10-11 11:09:16] -rw-r--r--. 1 boincer umatlas      8192 Oct 11 11:09 boinc_mmap_file
[2025-10-11 11:09:16] -rw-r--r--. 1 boincer umatlas     23371 Oct 11 11:09 stderr.txt
[2025-10-11 11:09:16] HITS file was successfully produced:
[2025-10-11 11:09:16] -rw-------. 1 boincer umatlas 191884439 Oct 11 10:28 shared/HITS.pool.root.1
[2025-10-11 11:09:16]  *** Contents of shared directory: ***
[2025-10-11 11:09:16] total 406548
[2025-10-11 11:09:16] -rw-r--r--. 3 boincer umatlas 219687356 Oct 11 00:05 ATLAS.root_0
[2025-10-11 11:09:16] -rw-r--r--. 2 boincer umatlas     15120 Oct 11 00:05 start_atlas.sh
[2025-10-11 11:09:16] -rw-r--r--. 2 boincer umatlas    569680 Oct 11 00:05 input.tar.gz
[2025-10-11 11:09:16] -rw-------. 1 boincer umatlas 191884439 Oct 11 10:28 HITS.pool.root.1
[2025-10-11 11:09:16] -rw-------. 1 boincer umatlas   4136960 Oct 11 10:31 result.tar.gz
11:09:18 (2490215): run_atlas exited; CPU time 51588.956954
11:09:18 (2490215): called boinc_finish(0)

</stderr_txt>
]]>

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