Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
07:31:46 (1548003): wrapper (7.7.26015): starting
07:31:46 (1548003): wrapper: running run_atlas (--nthreads 8)
[2025-10-11 07:31:46] Arguments: --nthreads 8
[2025-10-11 07:31:46] Threads: 8
[2025-10-11 07:31:46] Checking for CVMFS
[2025-10-11 07:31:47] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 07:31:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 07:31:47] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 07:31:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 07:31:49] 2.13.2.0 3361836 2697 145628 151583 1 293 26122666 32935936 31214 16776704 0 6999512 99.806 3894779 31933 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-11 07:31:49] CVMFS is ok
[2025-10-11 07:31:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 07:31:49] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 07:31:49] Further information can be found at the LHC@home message board.
[2025-10-11 07:31:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 07:31:49] Checking for apptainer binary...
[2025-10-11 07:31:49] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 07:31:49] Running /usr/bin/apptainer --version
[2025-10-11 07:31:49] apptainer version 1.4.3-1.el9
[2025-10-11 07:31:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 07:31:50] c-8-14.aglt2.org
[2025-10-11 07:31:50] apptainer works
[2025-10-11 07:31:50] Set ATHENA_PROC_NUMBER=8
[2025-10-11 07:31:50] Set ATHENA_CORE_NUMBER=8
[2025-10-11 07:31:50] Starting ATLAS job with PandaID=6837873598
[2025-10-11 07:31:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
15:12:57 (2895570): wrapper (7.7.26015): starting
15:12:57 (2895570): wrapper: running run_atlas (--nthreads 8)
[2025-10-11 15:12:57] Arguments: --nthreads 8
[2025-10-11 15:12:57] Threads: 8
[2025-10-11 15:12:57] This job has been restarted, cleaning up previous attempt
[2025-10-11 15:12:57] Checking for CVMFS
[2025-10-11 15:12:58] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 15:12:58] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 15:12:58] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 15:12:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 15:12:58] 2.13.2.0 3361836 3158 159216 151593 0 495 30870466 32935937 31241 16776704 0 8207910 99.815 4507395 31500 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-11 15:12:58] CVMFS is ok
[2025-10-11 15:12:58] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 15:12:58] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 15:12:58] Further information can be found at the LHC@home message board.
[2025-10-11 15:12:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 15:12:58] Checking for apptainer binary...
[2025-10-11 15:12:58] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 15:12:58] Running /usr/bin/apptainer --version
[2025-10-11 15:12:58] apptainer version 1.4.3-1.el9
[2025-10-11 15:12:58] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 15:12:59] c-8-14.aglt2.org
[2025-10-11 15:12:59] apptainer works
[2025-10-11 15:12:59] Set ATHENA_PROC_NUMBER=8
[2025-10-11 15:12:59] Set ATHENA_CORE_NUMBER=8
[2025-10-11 15:12:59] Starting ATLAS job with PandaID=6837873598
[2025-10-11 15:12:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 03:18:59]  *** The last 200 lines of the pilot log: ***
[2025-10-12 03:18:59] 2025-10-12 07:18:19,689 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2600.1620749999984
[2025-10-12 03:18:59] 2025-10-12 07:18:19,696 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6837873598/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 03:18:59] 2025-10-12 07:18:19,697 | INFO     | extracted standard info from prmon json
[2025-10-12 03:18:59] 2025-10-12 07:18:19,697 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 03:18:59] 2025-10-12 07:18:19,697 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 03:18:59] 2025-10-12 07:18:19,704 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 03:18:59] 2025-10-12 07:18:19,704 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 03:18:59] 2025-10-12 07:18:19,717 | INFO     | fitting pss+swap vs Time
[2025-10-12 03:18:59] 2025-10-12 07:18:19,718 | INFO     | sum of square deviations: 111460027720.644
[2025-10-12 03:18:59] 2025-10-12 07:18:19,731 | INFO     | sum of deviations: -63183945909.73979
[2025-10-12 03:18:59] 2025-10-12 07:18:19,731 | INFO     | mean x: 1760231731.6722925
[2025-10-12 03:18:59] 2025-10-12 07:18:19,731 | INFO     | mean y: 2125641.018284107
[2025-10-12 03:18:59] 2025-10-12 07:18:19,732 | INFO     | -- intersect: 999957678.1799839
[2025-10-12 03:18:59] 2025-10-12 07:18:19,732 | INFO     | intersect: 999957678.1799839
[2025-10-12 03:18:59] 2025-10-12 07:18:19,733 | INFO     | chi2: 3.479823130142899
[2025-10-12 03:18:59] 2025-10-12 07:18:19,734 | INFO     | sum of square deviations: 109125063090.27754
[2025-10-12 03:18:59] 2025-10-12 07:18:19,745 | INFO     | sum of deviations: -8687118336.08503
[2025-10-12 03:18:59] 2025-10-12 07:18:19,746 | INFO     | mean x: 1760231579.1671388
[2025-10-12 03:18:59] 2025-10-12 07:18:19,746 | INFO     | mean y: 2129186.254957507
[2025-10-12 03:18:59] 2025-10-12 07:18:19,746 | INFO     | -- intersect: 142255932.5230303
[2025-10-12 03:18:59] 2025-10-12 07:18:19,746 | INFO     | intersect: 142255932.5230303
[2025-10-12 03:18:59] 2025-10-12 07:18:19,747 | INFO     | chi2: 2.7669506477675734
[2025-10-12 03:18:59] 2025-10-12 07:18:19,747 | INFO     | current chi2=2.7669506477675734 (change=20.48588263582383 %)
[2025-10-12 03:18:59] 2025-10-12 07:18:19,747 | INFO     | right removable region: 705
[2025-10-12 03:18:59] 2025-10-12 07:18:19,748 | INFO     | sum of square deviations: 109125075360.86806
[2025-10-12 03:18:59] 2025-10-12 07:18:19,760 | INFO     | sum of deviations: -186524470045.45605
[2025-10-12 03:18:59] 2025-10-12 07:18:19,760 | INFO     | mean x: 1760231884.177054
[2025-10-12 03:18:59] 2025-10-12 07:18:19,761 | INFO     | mean y: 2133682.107648725
[2025-10-12 03:18:59] 2025-10-12 07:18:19,761 | INFO     | -- intersect: 3010849307.4347353
[2025-10-12 03:18:59] 2025-10-12 07:18:19,761 | INFO     | intersect: 3010849307.4347353
[2025-10-12 03:18:59] 2025-10-12 07:18:19,762 | INFO     | chi2: 1.655019060384602
[2025-10-12 03:18:59] 2025-10-12 07:18:19,762 | INFO     | current chi2=1.655019060384602 (change=52.43956377987985 %)
[2025-10-12 03:18:59] 2025-10-12 07:18:19,763 | INFO     | sum of square deviations: 106823003648.42232
[2025-10-12 03:18:59] 2025-10-12 07:18:19,778 | INFO     | sum of deviations: -218334454471.26233
[2025-10-12 03:18:59] 2025-10-12 07:18:19,779 | INFO     | mean x: 1760232036.6804564
[2025-10-12 03:18:59] 2025-10-12 07:18:19,779 | INFO     | mean y: 2135787.820256776
[2025-10-12 03:18:59] 2025-10-12 07:18:19,779 | INFO     | -- intersect: 3599856207.06951
[2025-10-12 03:18:59] 2025-10-12 07:18:19,779 | INFO     | intersect: 3599856207.06951
[2025-10-12 03:18:59] 2025-10-12 07:18:19,780 | INFO     | chi2: 1.523764931427631
[2025-10-12 03:18:59] 2025-10-12 07:18:19,780 | INFO     | current chi2=1.523764931427631 (change=7.930671742624497 %)
[2025-10-12 03:18:59] 2025-10-12 07:18:19,780 | INFO     | left removable region: 20
[2025-10-12 03:18:59] 2025-10-12 07:18:19,781 | INFO     | sum of square deviations: 99674549042.75064
[2025-10-12 03:18:59] 2025-10-12 07:18:19,826 | INFO     | sum of deviations: -144651991759.4279
[2025-10-12 03:18:59] 2025-10-12 07:18:19,827 | INFO     | mean x: 1760232158.6729927
[2025-10-12 03:18:59] 2025-10-12 07:18:19,827 | INFO     | mean y: 2138155.2525547445
[2025-10-12 03:18:59] 2025-10-12 07:18:19,827 | INFO     | -- intersect: 2556662757.1330023
[2025-10-12 03:18:59] 2025-10-12 07:18:19,827 | INFO     | intersect: 2556662757.1330023
[2025-10-12 03:18:59] 2025-10-12 07:18:19,828 | INFO     | chi2: 0.7590983993508682
[2025-10-12 03:18:59] 2025-10-12 07:18:19,829 | INFO     | -- intersect: 2556662757.1330023
[2025-10-12 03:18:59] 2025-10-12 07:18:19,829 | INFO     | current memory leak: -1.45 B/s (using 685 data points, chi2=0.76)
[2025-10-12 03:18:59] 2025-10-12 07:18:19,830 | INFO     | could have reported an average CPU frequency of 2601 MHz (27 samples)
[2025-10-12 03:18:59] 2025-10-12 07:18:19,830 | INFO     | ..............................
[2025-10-12 03:18:59] 2025-10-12 07:18:19,830 | INFO     | . Timing measurements:
[2025-10-12 03:18:59] 2025-10-12 07:18:19,830 | INFO     | . get job = 0 s
[2025-10-12 03:18:59] 2025-10-12 07:18:19,830 | INFO     | . initial setup = 2 s
[2025-10-12 03:18:59] 2025-10-12 07:18:19,831 | INFO     | . payload setup = 17 s
[2025-10-12 03:18:59] 2025-10-12 07:18:19,831 | INFO     | . stage-in = 0 s
[2025-10-12 03:18:59] 2025-10-12 07:18:19,831 | INFO     | . payload execution = 43385 s
[2025-10-12 03:18:59] 2025-10-12 07:18:19,834 | INFO     | . stage-out = 12 s
[2025-10-12 03:18:59] 2025-10-12 07:18:19,834 | INFO     | . log creation = 3 s
[2025-10-12 03:18:59] 2025-10-12 07:18:19,834 | INFO     | ..............................
[2025-10-12 03:18:59] 2025-10-12 07:18:19,849 | INFO     | monitor loop #2447: job 0:6837873598 is in state 'finished'
[2025-10-12 03:18:59] 2025-10-12 07:18:19,849 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 03:18:59] 2025-10-12 07:18:20,331 | INFO     | time since job start (43493s) is within the limit (172800.0s)
[2025-10-12 03:18:59] 2025-10-12 07:18:20,723 | INFO     | 
[2025-10-12 03:18:59] 2025-10-12 07:18:20,724 | INFO     | job summary report
[2025-10-12 03:18:59] 2025-10-12 07:18:20,724 | INFO     | --------------------------------------------------
[2025-10-12 03:18:59] 2025-10-12 07:18:20,724 | INFO     | PanDA job id: 6837873598
[2025-10-12 03:18:59] 2025-10-12 07:18:20,724 | INFO     | task id: 46676269
[2025-10-12 03:18:59] 2025-10-12 07:18:20,724 | INFO     | errors: (none)
[2025-10-12 03:18:59] 2025-10-12 07:18:20,724 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 03:18:59] 2025-10-12 07:18:20,724 | INFO     | pilot state: finished 
[2025-10-12 03:18:59] 2025-10-12 07:18:20,724 | INFO     | transexitcode: 0
[2025-10-12 03:18:59] 2025-10-12 07:18:20,725 | INFO     | exeerrorcode: 0
[2025-10-12 03:18:59] 2025-10-12 07:18:20,725 | INFO     | exeerrordiag: 
[2025-10-12 03:18:59] 2025-10-12 07:18:20,725 | INFO     | exitcode: 0
[2025-10-12 03:18:59] 2025-10-12 07:18:20,725 | INFO     | exitmsg: OK
[2025-10-12 03:18:59] 2025-10-12 07:18:20,725 | INFO     | cpuconsumptiontime: 50599 s
[2025-10-12 03:18:59] 2025-10-12 07:18:20,725 | INFO     | nevents: 400
[2025-10-12 03:18:59] 2025-10-12 07:18:20,725 | INFO     | neventsw: 0
[2025-10-12 03:18:59] 2025-10-12 07:18:20,725 | INFO     | pid: 2923432
[2025-10-12 03:18:59] 2025-10-12 07:18:20,725 | INFO     | pgrp: 2923432
[2025-10-12 03:18:59] 2025-10-12 07:18:20,725 | INFO     | corecount: 8
[2025-10-12 03:18:59] 2025-10-12 07:18:20,725 | INFO     | event service: False
[2025-10-12 03:18:59] 2025-10-12 07:18:20,726 | INFO     | sizes: {0: 2348856, 1: 2348856, 12: 2349174, 22: 2349174, 43408: 2393216, 43421: 2402214, 43424: 2402398, 43460: 2402592}
[2025-10-12 03:18:59] 2025-10-12 07:18:20,726 | INFO     | --------------------------------------------------
[2025-10-12 03:18:59] 2025-10-12 07:18:20,726 | INFO     | 
[2025-10-12 03:18:59] 2025-10-12 07:18:20,726 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-12 03:18:59] 2025-10-12 07:18:20,811 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 03:18:59] 2025-10-12 07:18:20,811 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 03:18:59] 2025-10-12 07:18:20,811 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 03:18:59] 2025-10-12 07:18:20,812 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 03:18:59] 2025-10-12 07:18:20,812 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 03:18:59] 2025-10-12 07:18:20,812 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 03:18:59] 2025-10-12 07:18:20,812 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 03:18:59] 2025-10-12 07:18:20,812 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 03:18:59] 2025-10-12 07:18:20,812 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 03:18:59] 2025-10-12 07:18:20,812 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 03:18:59] 2025-10-12 07:18:20,812 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 03:18:59] 2025-10-12 07:18:20,812 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 03:18:59] 2025-10-12 07:18:20,813 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 03:18:59] 2025-10-12 07:18:20,813 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 03:18:59] 2025-10-12 07:18:20,813 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 03:18:59] 2025-10-12 07:18:20,813 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 03:18:59] 2025-10-12 07:18:20,813 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 03:18:59] 2025-10-12 07:18:20,813 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 03:18:59] 2025-10-12 07:18:20,813 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 03:18:59] 2025-10-12 07:18:20,813 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 03:18:59] 2025-10-12 07:18:20,814 | INFO     | job 6837873598 has completed (purged errors)
[2025-10-12 03:18:59] 2025-10-12 07:18:20,814 | INFO     | overall cleanup function is called
[2025-10-12 03:18:59] 2025-10-12 07:18:21,827 | INFO     | --- collectZombieJob: --- 10, [2923432]
[2025-10-12 03:18:59] 2025-10-12 07:18:21,827 | INFO     | zombie collector waiting for pid 2923432
[2025-10-12 03:18:59] 2025-10-12 07:18:21,827 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 03:18:59] 2025-10-12 07:18:21,827 | INFO     | collected zombie processes
[2025-10-12 03:18:59] 2025-10-12 07:18:21,827 | INFO     | will attempt to kill all subprocesses of pid=2923432
[2025-10-12 03:18:59] 2025-10-12 07:18:23,726 | INFO     | process IDs to be killed: [2923432] (in reverse order)
[2025-10-12 03:18:59] 2025-10-12 07:18:23,961 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 03:18:59] 2025-10-12 07:18:23,961 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 03:18:59] 2025-10-12 07:18:24,098 | INFO     | did not find any defunct processes belonging to 2923432
[2025-10-12 03:18:59] 2025-10-12 07:18:24,142 | INFO     | did not find any defunct processes belonging to 2923432
[2025-10-12 03:18:59] 2025-10-12 07:18:24,142 | INFO     | ready for new job
[2025-10-12 03:18:59] 2025-10-12 07:18:24,142 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 03:18:59] 2025-10-12 07:18:24,155 | INFO     | ***************************************
[2025-10-12 03:18:59] 2025-10-12 07:18:24,155 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 03:18:59] 2025-10-12 07:18:24,155 | INFO     | ***************************************
[2025-10-12 03:18:59] 2025-10-12 07:18:24,155 | INFO     | 
[2025-10-12 03:18:59] 2025-10-12 07:18:24,170 | INFO     | architecture information:
[2025-10-12 03:18:59] 2025-10-12 07:18:24,180 | INFO     | executing command: cat /etc/os-release
[2025-10-12 03:18:59] 2025-10-12 07:18:24,277 | INFO     | cat /etc/os-release:
[2025-10-12 03:18:59] NAME="CentOS Linux"
[2025-10-12 03:18:59] VERSION="7 (Core)"
[2025-10-12 03:18:59] ID="centos"
[2025-10-12 03:18:59] ID_LIKE="rhel fedora"
[2025-10-12 03:18:59] VERSION_ID="7"
[2025-10-12 03:18:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 03:18:59] ANSI_COLOR="0;31"
[2025-10-12 03:18:59] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 03:18:59] HOME_URL="https://www.centos.org/"
[2025-10-12 03:18:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 03:18:59] 
[2025-10-12 03:18:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 03:18:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 03:18:59] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 03:18:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 03:18:59] 
[2025-10-12 03:18:59] 2025-10-12 07:18:24,278 | INFO     | ***************************************
[2025-10-12 03:18:59] 2025-10-12 07:18:24,798 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-12 03:18:59] 2025-10-12 07:18:24,960 | INFO     | sufficient remaining disk space (75108450304 B)
[2025-10-12 03:18:59] 2025-10-12 07:18:24,960 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 03:18:59] 2025-10-12 07:18:24,961 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 03:18:59] 2025-10-12 07:18:24,961 | INFO     | update_server=False
[2025-10-12 03:18:59] 2025-10-12 07:18:24,961 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 03:18:59] 2025-10-12 07:18:25,171 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 03:18:59] 2025-10-12 07:18:25,227 | INFO     | all data control threads have been joined
[2025-10-12 03:18:59] 2025-10-12 07:18:25,773 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 03:18:59] 2025-10-12 07:18:25,934 | INFO     | all job control threads have been joined
[2025-10-12 03:18:59] 2025-10-12 07:18:25,954 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 03:18:59] 2025-10-12 07:18:25,954 | INFO     | aborting loop
[2025-10-12 03:18:59] 2025-10-12 07:18:25,975 | INFO     | [job] retrieve thread has finished
[2025-10-12 03:18:59] 2025-10-12 07:18:26,235 | INFO     | [data] control thread has finished
[2025-10-12 03:18:59] 2025-10-12 07:18:26,255 | INFO     | [payload] validate_post thread has finished
[2025-10-12 03:18:59] 2025-10-12 07:18:26,393 | INFO     | [data] copytool_in thread has finished
[2025-10-12 03:18:59] 2025-10-12 07:18:26,534 | INFO     | all payload control threads have been joined
[2025-10-12 03:18:59] 2025-10-12 07:18:26,781 | INFO     | [job] queue monitor thread has finished
[2025-10-12 03:18:59] 2025-10-12 07:18:26,939 | INFO     | [job] control thread has finished
[2025-10-12 03:18:59] 2025-10-12 07:18:26,974 | INFO     | [job] job monitor thread has finished
[2025-10-12 03:18:59] 2025-10-12 07:18:27,182 | INFO     | [data] copytool_out thread has finished
[2025-10-12 03:18:59] 2025-10-12 07:18:27,227 | INFO     | [payload] failed_post thread has finished
[2025-10-12 03:18:59] 2025-10-12 07:18:27,308 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 03:18:59] 2025-10-12 07:18:27,327 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 03:18:59] 2025-10-12 07:18:27,327 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 03:18:59] 2025-10-12 07:18:27,328 | INFO     | [job] validate thread has finished
[2025-10-12 03:18:59] 2025-10-12 07:18:27,333 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 03:18:59] 2025-10-12 07:18:27,390 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 03:18:59] 2025-10-12 07:18:27,540 | INFO     | [payload] control thread has finished
[2025-10-12 03:18:59] 2025-10-12 07:18:31,439 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 03:18:59] 2025-10-12 07:18:48,575 | INFO     | [monitor] cgroup control has ended
[2025-10-12 03:18:59] 2025-10-12 07:18:49,985 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140637714597696)>', '<ExcThread(monitor, started 140637227710208)>']
[2025-10-12 03:18:59] 2025-10-12 07:18:55,060 | INFO     | all workflow threads have been joined
[2025-10-12 03:18:59] 2025-10-12 07:18:55,060 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 03:18:59] 2025-10-12 07:18:55,060 | INFO     | traces error code: 0
[2025-10-12 03:18:59] 2025-10-12 07:18:55,061 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 03:18:59] 2025-10-12 07:18:57,744 | INFO     | PID=2908446 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 03:18:59] 2025-10-12 07:18:57,745 | INFO     | .. there are 38 such processes running
[2025-10-12 03:18:59] 2025-10-12 07:18:57,745 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 03:18:59] 2025-10-12 07:18:57,746 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 03:18:59] 2025-10-12 07:18:57,746 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 03:18:59] 2025-10-12 07:18:57,746 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 03:18:59] 2025-10-12 07:18:57,746 | CRITICAL | thread 'MainThread' is not alive
[2025-10-12 03:18:59] 2025-10-12 07:18:57,746 | INFO     | [monitor] control thread has ended
[2025-10-12 03:18:59] 2025-10-12 07:18:58,030 [wrapper] ==== pilot stdout END ====
[2025-10-12 03:18:59] 2025-10-12 07:18:58,057 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 03:18:59] 2025-10-12 07:18:58,087 [wrapper] pilotpid: 2908446
[2025-10-12 03:18:59] 2025-10-12 07:18:58,118 [wrapper] Pilot exit status: 0
[2025-10-12 03:18:59] 2025-10-12 07:18:58,139 [wrapper] pandaids: 6837873598 6837873598
[2025-10-12 03:18:59] 2025-10-12 07:18:58,224 [wrapper] cleanup supervisor_pilot  819952 2908447
[2025-10-12 03:18:59] 2025-10-12 07:18:58,227 [wrapper] Test setup, not cleaning
[2025-10-12 03:18:59] 2025-10-12 07:18:58,231 [wrapper] apfmon messages muted
[2025-10-12 03:18:59] 2025-10-12 07:18:58,238 [wrapper] ==== wrapper stdout END ====
[2025-10-12 03:18:59] 2025-10-12 07:18:58,279 [wrapper] ==== wrapper stderr END ====
[2025-10-12 03:18:59]  *** Error codes and diagnostics ***
[2025-10-12 03:18:59]     "exeErrorCode": 0,
[2025-10-12 03:18:59]     "exeErrorDiag": "",
[2025-10-12 03:18:59]     "pilotErrorCode": 0,
[2025-10-12 03:18:59]     "pilotErrorDiag": "",
[2025-10-12 03:18:59]  *** Listing of results directory ***
[2025-10-12 03:18:59] total 632944
[2025-10-12 03:18:59] drwx------. 5 boincer umatlas      4096 Oct  7 03:00 pilot3
[2025-10-12 03:18:59] -rw-r--r--. 1 boincer umatlas    557409 Oct 10 18:34 pilot3.tar.gz
[2025-10-12 03:18:59] -rwx------. 1 boincer umatlas     36292 Oct 10 18:45 runpilot2-wrapper.sh
[2025-10-12 03:18:59] -rw-r--r--. 1 boincer umatlas      5112 Oct 10 18:45 queuedata.json
[2025-10-12 03:18:59] -rw-r--r--. 1 boincer umatlas       100 Oct 11 07:31 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 03:18:59] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 11 07:31 run_atlas
[2025-10-12 03:18:59] -rw-r--r--. 1 boincer umatlas       105 Oct 11 07:31 job.xml
[2025-10-12 03:18:59] -rw-r--r--. 3 boincer umatlas 220038001 Oct 11 07:31 EVNT.46676267._001876.pool.root.1
[2025-10-12 03:18:59] -rw-r--r--. 3 boincer umatlas 220038001 Oct 11 07:31 ATLAS.root_0
[2025-10-12 03:18:59] drwxrwx--x. 2 boincer umatlas      4096 Oct 11 07:31 shared
[2025-10-12 03:18:59] -rw-r--r--. 2 boincer umatlas    569676 Oct 11 07:31 input.tar.gz
[2025-10-12 03:18:59] -rw-r--r--. 2 boincer umatlas     15120 Oct 11 07:31 start_atlas.sh
[2025-10-12 03:18:59] -rw-r--r--. 1 boincer umatlas         0 Oct 11 07:31 boinc_lockfile
[2025-10-12 03:18:59] -rw-r--r--. 1 boincer umatlas      2549 Oct 11 15:12 pandaJob.out
[2025-10-12 03:18:59] -rw-------. 1 boincer umatlas    975520 Oct 11 15:13 agis_schedconf.cvmfs.json
[2025-10-12 03:18:59] -rw-r--r--. 1 boincer umatlas      6661 Oct 12 03:09 init_data.xml
[2025-10-12 03:18:59] -rw-------. 1 boincer umatlas 192163289 Oct 12 03:16 HITS.46676269._046450.pool.root.1
[2025-10-12 03:18:59] -rw-r--r--. 1 boincer umatlas       532 Oct 12 03:16 boinc_task_state.xml
[2025-10-12 03:18:59] -rw-------. 1 boincer umatlas      1052 Oct 12 03:17 memory_monitor_summary.json
[2025-10-12 03:18:59] -rw-------. 1 boincer umatlas   1560580 Oct 12 03:17 agis_ddmendpoints.agis.ALL.json
[2025-10-12 03:18:59] -rw-------. 1 boincer umatlas    818759 Oct 12 03:17 log.46676269._046450.job.log.tgz.1
[2025-10-12 03:18:59] -rw-------. 1 boincer umatlas        96 Oct 12 03:18 pilot_heartbeat.json
[2025-10-12 03:18:59] -rw-------. 1 boincer umatlas      7846 Oct 12 03:18 heartbeat.json
[2025-10-12 03:18:59] -rw-r--r--. 1 boincer umatlas      8192 Oct 12 03:18 boinc_mmap_file
[2025-10-12 03:18:59] -rw-r--r--. 1 boincer umatlas        29 Oct 12 03:18 wrapper_checkpoint.txt
[2025-10-12 03:18:59] -rw-------. 1 boincer umatlas       893 Oct 12 03:18 pilotlog.txt
[2025-10-12 03:18:59] -rw-------. 1 boincer umatlas   5174316 Oct 12 03:18 log.46676269._046450.job.log.1
[2025-10-12 03:18:59] -rw-------. 1 boincer umatlas       357 Oct 12 03:18 output.list
[2025-10-12 03:18:59] -rw-r--r--. 1 boincer umatlas       620 Oct 12 03:18 runtime_log
[2025-10-12 03:18:59] -rw-------. 1 boincer umatlas   6010880 Oct 12 03:18 result.tar.gz
[2025-10-12 03:18:59] -rw-r--r--. 1 boincer umatlas      8779 Oct 12 03:18 runtime_log.err
[2025-10-12 03:18:59] -rw-------. 1 boincer umatlas       785 Oct 12 03:18 fhvMDmD3aR8n9Rq4apOajLDm4fhM0noT9bVof3QYDmCkQMDmUIM6Ym.diag
[2025-10-12 03:18:59] -rw-r--r--. 1 boincer umatlas     23356 Oct 12 03:18 stderr.txt
[2025-10-12 03:18:59] HITS file was successfully produced:
[2025-10-12 03:18:59] -rw-------. 1 boincer umatlas 192163289 Oct 12 03:16 shared/HITS.pool.root.1
[2025-10-12 03:18:59]  *** Contents of shared directory: ***
[2025-10-12 03:18:59] total 409000
[2025-10-12 03:18:59] -rw-r--r--. 3 boincer umatlas 220038001 Oct 11 07:31 ATLAS.root_0
[2025-10-12 03:18:59] -rw-r--r--. 2 boincer umatlas    569676 Oct 11 07:31 input.tar.gz
[2025-10-12 03:18:59] -rw-r--r--. 2 boincer umatlas     15120 Oct 11 07:31 start_atlas.sh
[2025-10-12 03:18:59] -rw-------. 1 boincer umatlas 192163289 Oct 12 03:16 HITS.pool.root.1
[2025-10-12 03:18:59] -rw-------. 1 boincer umatlas   6010880 Oct 12 03:18 result.tar.gz
03:19:00 (2895570): run_atlas exited; CPU time 52440.324630
03:19:00 (2895570): called boinc_finish(0)

</stderr_txt>
]]>

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