Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:04:44 (687679): wrapper (7.7.26015): starting
00:04:44 (687679): wrapper: running run_atlas (--nthreads 9)
[2025-10-12 00:04:44] Arguments: --nthreads 9
[2025-10-12 00:04:44] Threads: 9
[2025-10-12 00:04:44] Checking for CVMFS
[2025-10-12 00:04:45] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 00:04:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 00:04:46] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 00:04:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 00:04:48] 2.13.2.0 1270615 128757 623440 151606 0 258 13092788 21042177 33223 16776704 0 85237531 99.365 131614686 29249 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-12 00:04:48] CVMFS is ok
[2025-10-12 00:04:48] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 00:04:48] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 00:04:48] Further information can be found at the LHC@home message board.
[2025-10-12 00:04:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 00:04:48] Checking for apptainer binary...
[2025-10-12 00:04:48] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 00:04:48] Running /usr/bin/apptainer --version
[2025-10-12 00:04:49] apptainer version 1.4.3-1.el9
[2025-10-12 00:04:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 00:04:50] c-16-12.aglt2.org
[2025-10-12 00:04:50] apptainer works
[2025-10-12 00:05:11] Set ATHENA_PROC_NUMBER=9
[2025-10-12 00:05:11] Set ATHENA_CORE_NUMBER=9
[2025-10-12 00:05:11] Starting ATLAS job with PandaID=6837932474
[2025-10-12 00:05:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 16:33:31]  *** The last 200 lines of the pilot log: ***
[2025-10-12 16:33:31] 2025-10-12 20:32:30,781 | INFO     | fitting pss+swap vs Time
[2025-10-12 16:33:31] 2025-10-12 20:32:30,783 | INFO     | sum of square deviations: 278625123602.8186
[2025-10-12 16:33:31] 2025-10-12 20:32:30,811 | INFO     | sum of deviations: 888890671695.814
[2025-10-12 16:33:31] 2025-10-12 20:32:30,812 | INFO     | mean x: 1760271698.3056996
[2025-10-12 16:33:31] 2025-10-12 20:32:30,812 | INFO     | mean y: 2058919.5430051812
[2025-10-12 16:33:31] 2025-10-12 20:32:30,812 | INFO     | -- intersect: -5613691275.706997
[2025-10-12 16:33:31] 2025-10-12 20:32:30,812 | INFO     | intersect: -5613691275.706997
[2025-10-12 16:33:31] 2025-10-12 20:32:30,814 | INFO     | chi2: 6.84164227108709
[2025-10-12 16:33:31] 2025-10-12 20:32:30,816 | INFO     | sum of square deviations: 274316552684.25
[2025-10-12 16:33:31] 2025-10-12 20:32:30,844 | INFO     | sum of deviations: 992222403424.6235
[2025-10-12 16:33:31] 2025-10-12 20:32:30,844 | INFO     | mean x: 1760271545.8125
[2025-10-12 16:33:31] 2025-10-12 20:32:30,844 | INFO     | mean y: 2062571.93125
[2025-10-12 16:33:31] 2025-10-12 20:32:30,844 | INFO     | -- intersect: -6364964305.504195
[2025-10-12 16:33:31] 2025-10-12 20:32:30,845 | INFO     | intersect: -6364964305.504195
[2025-10-12 16:33:31] 2025-10-12 20:32:30,846 | INFO     | chi2: 5.89084685046169
[2025-10-12 16:33:31] 2025-10-12 20:32:30,846 | INFO     | current chi2=5.89084685046169 (change=13.897181158440263 %)
[2025-10-12 16:33:31] 2025-10-12 20:32:30,846 | INFO     | right removable region: 959
[2025-10-12 16:33:31] 2025-10-12 20:32:30,848 | INFO     | sum of square deviations: 274315784084.25
[2025-10-12 16:33:31] 2025-10-12 20:32:30,875 | INFO     | sum of deviations: 660825523672.6882
[2025-10-12 16:33:31] 2025-10-12 20:32:30,876 | INFO     | mean x: 1760271850.8125
[2025-10-12 16:33:31] 2025-10-12 20:32:30,876 | INFO     | mean y: 2066986.159375
[2025-10-12 16:33:31] 2025-10-12 20:32:30,876 | INFO     | -- intersect: -4238420200.907489
[2025-10-12 16:33:31] 2025-10-12 20:32:30,876 | INFO     | intersect: -4238420200.907489
[2025-10-12 16:33:31] 2025-10-12 20:32:30,878 | INFO     | chi2: 3.8848267862620576
[2025-10-12 16:33:31] 2025-10-12 20:32:30,878 | INFO     | current chi2=3.8848267862620576 (change=43.21792002076155 %)
[2025-10-12 16:33:31] 2025-10-12 20:32:30,879 | INFO     | sum of square deviations: 270051623724.25565
[2025-10-12 16:33:31] 2025-10-12 20:32:30,907 | INFO     | sum of deviations: 523473967490.6224
[2025-10-12 16:33:31] 2025-10-12 20:32:30,907 | INFO     | mean x: 1760272003.3099477
[2025-10-12 16:33:31] 2025-10-12 20:32:30,907 | INFO     | mean y: 2071896.639790576
[2025-10-12 16:33:31] 2025-10-12 20:32:30,908 | INFO     | -- intersect: -3410077812.840221
[2025-10-12 16:33:31] 2025-10-12 20:32:30,908 | INFO     | intersect: -3410077812.840221
[2025-10-12 16:33:31] 2025-10-12 20:32:30,909 | INFO     | chi2: 2.896371027636061
[2025-10-12 16:33:31] 2025-10-12 20:32:30,909 | INFO     | current chi2=2.896371027636061 (change=25.44401109777868 %)
[2025-10-12 16:33:31] 2025-10-12 20:32:30,911 | INFO     | sum of square deviations: 265831591654.64996
[2025-10-12 16:33:31] 2025-10-12 20:32:30,937 | INFO     | sum of deviations: 415234486800.7008
[2025-10-12 16:33:31] 2025-10-12 20:32:30,938 | INFO     | mean x: 1760272155.8126316
[2025-10-12 16:33:31] 2025-10-12 20:32:30,938 | INFO     | mean y: 2075808.3915789474
[2025-10-12 16:33:31] 2025-10-12 20:32:30,938 | INFO     | -- intersect: -2747505987.732899
[2025-10-12 16:33:31] 2025-10-12 20:32:30,938 | INFO     | intersect: -2747505987.732899
[2025-10-12 16:33:31] 2025-10-12 20:32:30,940 | INFO     | chi2: 2.304158334696899
[2025-10-12 16:33:31] 2025-10-12 20:32:30,940 | INFO     | current chi2=2.304158334696899 (change=20.446713742420975 %)
[2025-10-12 16:33:31] 2025-10-12 20:32:30,940 | INFO     | left removable region: 30
[2025-10-12 16:33:31] 2025-10-12 20:32:30,942 | INFO     | sum of square deviations: 248588639956.58963
[2025-10-12 16:33:31] 2025-10-12 20:32:30,967 | INFO     | sum of deviations: 421029289585.3421
[2025-10-12 16:33:31] 2025-10-12 20:32:30,967 | INFO     | mean x: 1760272430.315393
[2025-10-12 16:33:31] 2025-10-12 20:32:30,967 | INFO     | mean y: 2084278.5005382132
[2025-10-12 16:33:31] 2025-10-12 20:32:30,968 | INFO     | -- intersect: -2979251678.531828
[2025-10-12 16:33:31] 2025-10-12 20:32:30,968 | INFO     | intersect: -2979251678.531828
[2025-10-12 16:33:31] 2025-10-12 20:32:30,969 | INFO     | chi2: 0.9995316747908495
[2025-10-12 16:33:31] 2025-10-12 20:32:30,969 | INFO     | -- intersect: -2979251678.531828
[2025-10-12 16:33:31] 2025-10-12 20:32:30,970 | INFO     | current memory leak: 1.69 B/s (using 929 data points, chi2=1.00)
[2025-10-12 16:33:31] 2025-10-12 20:32:30,971 | INFO     | could have reported an average CPU frequency of 2900 MHz (23 samples)
[2025-10-12 16:33:31] 2025-10-12 20:32:30,971 | INFO     | ..............................
[2025-10-12 16:33:31] 2025-10-12 20:32:30,971 | INFO     | . Timing measurements:
[2025-10-12 16:33:31] 2025-10-12 20:32:30,971 | INFO     | . get job = 1 s
[2025-10-12 16:33:31] 2025-10-12 20:32:30,972 | INFO     | . initial setup = 13 s
[2025-10-12 16:33:31] 2025-10-12 20:32:30,972 | INFO     | . payload setup = 69 s
[2025-10-12 16:33:31] 2025-10-12 20:32:30,972 | INFO     | . stage-in = 1 s
[2025-10-12 16:33:31] 2025-10-12 20:32:30,972 | INFO     | . payload execution = 58900 s
[2025-10-12 16:33:31] 2025-10-12 20:32:30,972 | INFO     | . stage-out = 2 s
[2025-10-12 16:33:31] 2025-10-12 20:32:30,972 | INFO     | . log creation = 0 s
[2025-10-12 16:33:31] 2025-10-12 20:32:30,973 | INFO     | ..............................
[2025-10-12 16:33:31] 2025-10-12 20:32:31,116 | INFO     | 
[2025-10-12 16:33:31] 2025-10-12 20:32:31,116 | INFO     | job summary report
[2025-10-12 16:33:31] 2025-10-12 20:32:31,116 | INFO     | --------------------------------------------------
[2025-10-12 16:33:31] 2025-10-12 20:32:31,116 | INFO     | PanDA job id: 6837932474
[2025-10-12 16:33:31] 2025-10-12 20:32:31,117 | INFO     | task id: 46676269
[2025-10-12 16:33:31] 2025-10-12 20:32:31,117 | INFO     | errors: (none)
[2025-10-12 16:33:31] 2025-10-12 20:32:31,117 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 16:33:31] 2025-10-12 20:32:31,117 | INFO     | pilot state: finished 
[2025-10-12 16:33:31] 2025-10-12 20:32:31,117 | INFO     | transexitcode: 0
[2025-10-12 16:33:31] 2025-10-12 20:32:31,117 | INFO     | exeerrorcode: 0
[2025-10-12 16:33:31] 2025-10-12 20:32:31,117 | INFO     | exeerrordiag: 
[2025-10-12 16:33:31] 2025-10-12 20:32:31,118 | INFO     | exitcode: 0
[2025-10-12 16:33:31] 2025-10-12 20:32:31,118 | INFO     | exitmsg: OK
[2025-10-12 16:33:31] 2025-10-12 20:32:31,118 | INFO     | cpuconsumptiontime: 75731 s
[2025-10-12 16:33:31] 2025-10-12 20:32:31,118 | INFO     | nevents: 400
[2025-10-12 16:33:31] 2025-10-12 20:32:31,118 | INFO     | neventsw: 0
[2025-10-12 16:33:31] 2025-10-12 20:32:31,118 | INFO     | pid: 718294
[2025-10-12 16:33:31] 2025-10-12 20:32:31,119 | INFO     | pgrp: 718294
[2025-10-12 16:33:31] 2025-10-12 20:32:31,119 | INFO     | corecount: 9
[2025-10-12 16:33:31] 2025-10-12 20:32:31,119 | INFO     | event service: False
[2025-10-12 16:33:31] 2025-10-12 20:32:31,119 | INFO     | sizes: {0: 2348628, 1: 2348712, 2: 2348883, 4: 2348911, 16: 2348939, 27: 2348967, 39: 2349123, 51: 2349151, 57: 2349441, 63: 2349469, 58974: 2388400, 58978: 239739
[2025-10-12 16:33:31] 2025-10-12 20:32:31,119 | INFO     | --------------------------------------------------
[2025-10-12 16:33:31] 2025-10-12 20:32:31,119 | INFO     | 
[2025-10-12 16:33:31] 2025-10-12 20:32:31,120 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-10-12 16:33:31] 2025-10-12 20:32:31,151 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 16:33:31] 2025-10-12 20:32:31,151 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 16:33:31] 2025-10-12 20:32:31,151 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 16:33:31] 2025-10-12 20:32:31,151 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 16:33:31] 2025-10-12 20:32:31,152 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 16:33:31] 2025-10-12 20:32:31,152 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 16:33:31] 2025-10-12 20:32:31,153 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 16:33:31] 2025-10-12 20:32:31,153 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 16:33:31] 2025-10-12 20:32:31,153 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 16:33:31] 2025-10-12 20:32:31,153 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 16:33:31] 2025-10-12 20:32:31,153 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 16:33:31] 2025-10-12 20:32:31,153 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 16:33:31] 2025-10-12 20:32:31,154 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 16:33:31] 2025-10-12 20:32:31,154 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 16:33:31] 2025-10-12 20:32:31,154 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 16:33:31] 2025-10-12 20:32:31,154 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 16:33:31] 2025-10-12 20:32:31,154 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 16:33:31] 2025-10-12 20:32:31,154 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 16:33:31] 2025-10-12 20:32:31,154 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 16:33:31] 2025-10-12 20:32:31,155 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 16:33:31] 2025-10-12 20:32:31,155 | INFO     | job 6837932474 has completed (purged errors)
[2025-10-12 16:33:31] 2025-10-12 20:32:31,155 | INFO     | overall cleanup function is called
[2025-10-12 16:33:31] 2025-10-12 20:32:32,165 | INFO     | --- collectZombieJob: --- 10, [718294]
[2025-10-12 16:33:31] 2025-10-12 20:32:32,165 | INFO     | zombie collector waiting for pid 718294
[2025-10-12 16:33:31] 2025-10-12 20:32:32,165 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 16:33:31] 2025-10-12 20:32:32,165 | INFO     | collected zombie processes
[2025-10-12 16:33:31] 2025-10-12 20:32:32,165 | INFO     | will attempt to kill all subprocesses of pid=718294
[2025-10-12 16:33:31] 2025-10-12 20:32:32,763 | INFO     | process IDs to be killed: [718294] (in reverse order)
[2025-10-12 16:33:31] 2025-10-12 20:32:32,998 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 16:33:31] 2025-10-12 20:32:32,999 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 16:33:31] 2025-10-12 20:32:33,052 | INFO     | did not find any defunct processes belonging to 718294
[2025-10-12 16:33:31] 2025-10-12 20:32:33,156 | INFO     | did not find any defunct processes belonging to 718294
[2025-10-12 16:33:31] 2025-10-12 20:32:33,156 | INFO     | ready for new job
[2025-10-12 16:33:31] 2025-10-12 20:32:33,157 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 16:33:31] 2025-10-12 20:32:33,208 | INFO     | ***************************************
[2025-10-12 16:33:31] 2025-10-12 20:32:33,208 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 16:33:31] 2025-10-12 20:32:33,208 | INFO     | ***************************************
[2025-10-12 16:33:31] 2025-10-12 20:32:33,208 | INFO     | 
[2025-10-12 16:33:31] 2025-10-12 20:32:33,225 | INFO     | architecture information:
[2025-10-12 16:33:31] 2025-10-12 20:32:33,225 | INFO     | executing command: cat /etc/os-release
[2025-10-12 16:33:31] 2025-10-12 20:32:33,243 | INFO     | cat /etc/os-release:
[2025-10-12 16:33:31] NAME="CentOS Linux"
[2025-10-12 16:33:31] VERSION="7 (Core)"
[2025-10-12 16:33:31] ID="centos"
[2025-10-12 16:33:31] ID_LIKE="rhel fedora"
[2025-10-12 16:33:31] VERSION_ID="7"
[2025-10-12 16:33:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 16:33:31] ANSI_COLOR="0;31"
[2025-10-12 16:33:31] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 16:33:31] HOME_URL="https://www.centos.org/"
[2025-10-12 16:33:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 16:33:31] 
[2025-10-12 16:33:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 16:33:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 16:33:31] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 16:33:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 16:33:31] 
[2025-10-12 16:33:31] 2025-10-12 20:32:33,243 | INFO     | ***************************************
[2025-10-12 16:33:31] 2025-10-12 20:32:33,745 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-10-12 16:33:31] 2025-10-12 20:32:33,766 | INFO     | sufficient remaining disk space (52960428032 B)
[2025-10-12 16:33:31] 2025-10-12 20:32:33,767 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 16:33:31] 2025-10-12 20:32:33,767 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 16:33:31] 2025-10-12 20:32:33,767 | INFO     | update_server=False
[2025-10-12 16:33:31] 2025-10-12 20:32:33,767 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 16:33:31] 2025-10-12 20:32:33,814 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 16:33:31] 2025-10-12 20:32:33,946 | INFO     | all data control threads have been joined
[2025-10-12 16:33:31] 2025-10-12 20:32:33,964 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-12 16:33:31] 2025-10-12 20:32:33,965 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-12 16:33:31] 2025-10-12 20:32:33,965 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 16:33:31] 2025-10-12 20:32:33,965 | INFO     | will abort loop
[2025-10-12 16:33:31] 2025-10-12 20:32:34,218 | INFO     | all payload control threads have been joined
[2025-10-12 16:33:31] 2025-10-12 20:32:34,651 | INFO     | all job control threads have been joined
[2025-10-12 16:33:31] 2025-10-12 20:32:34,774 | INFO     | [job] retrieve thread has finished
[2025-10-12 16:33:31] 2025-10-12 20:32:34,822 | INFO     | [payload] failed_post thread has finished
[2025-10-12 16:33:31] 2025-10-12 20:32:34,952 | INFO     | [data] control thread has finished
[2025-10-12 16:33:31] 2025-10-12 20:32:34,971 | INFO     | [job] job monitor thread has finished
[2025-10-12 16:33:31] 2025-10-12 20:32:35,213 | INFO     | [data] copytool_in thread has finished
[2025-10-12 16:33:31] 2025-10-12 20:32:35,223 | INFO     | [payload] control thread has finished
[2025-10-12 16:33:31] 2025-10-12 20:32:35,336 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 16:33:31] 2025-10-12 20:32:35,367 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 16:33:31] 2025-10-12 20:32:35,382 | INFO     | [payload] validate_post thread has finished
[2025-10-12 16:33:31] 2025-10-12 20:32:35,552 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 16:33:31] 2025-10-12 20:32:35,660 | INFO     | [job] control thread has finished
[2025-10-12 16:33:31] 2025-10-12 20:32:35,828 | INFO     | [data] copytool_out thread has finished
[2025-10-12 16:33:31] 2025-10-12 20:32:35,968 | INFO     | [job] validate thread has finished
[2025-10-12 16:33:31] 2025-10-12 20:32:36,129 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 16:33:31] 2025-10-12 20:32:36,831 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 16:33:31] 2025-10-12 20:32:37,134 | INFO     | [job] queue monitor thread has finished
[2025-10-12 16:33:31] 2025-10-12 20:32:40,841 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 16:33:31] 2025-10-12 20:32:44,109 | INFO     | job.realtimelogging is not enabled
[2025-10-12 16:33:31] 2025-10-12 20:32:45,124 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 16:33:31] 2025-10-12 20:33:04,204 | INFO     | PID=696760 has CPU usage=4.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-12 16:33:31] 2025-10-12 20:33:04,205 | INFO     | .. there are 29 such processes running
[2025-10-12 16:33:31] 2025-10-12 20:33:04,205 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 16:33:31] 2025-10-12 20:33:04,205 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 16:33:31] 2025-10-12 20:33:04,205 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 16:33:31] 2025-10-12 20:33:25,387 | INFO     | [monitor] cgroup control has ended
[2025-10-12 16:33:31] 2025-10-12 20:33:25,797 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139879500031808)>', '<ExcThread(monitor, started 139879006586624)>']
[2025-10-12 16:33:31] 2025-10-12 20:33:26,340 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 16:33:31] 2025-10-12 20:33:26,340 | INFO     | [monitor] control thread has ended
[2025-10-12 16:33:31] 2025-10-12 20:33:30,824 | INFO     | all workflow threads have been joined
[2025-10-12 16:33:31] 2025-10-12 20:33:30,824 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 16:33:31] 2025-10-12 20:33:30,825 | INFO     | traces error code: 0
[2025-10-12 16:33:31] 2025-10-12 20:33:30,828 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 16:33:31] 2025-10-12 20:33:31,056 [wrapper] ==== pilot stdout END ====
[2025-10-12 16:33:31] 2025-10-12 20:33:31,059 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 16:33:31] 2025-10-12 20:33:31,061 [wrapper] pilotpid: 696760
[2025-10-12 16:33:31] 2025-10-12 20:33:31,064 [wrapper] Pilot exit status: 0
[2025-10-12 16:33:31] 2025-10-12 20:33:31,076 [wrapper] pandaids: 6837932474
[2025-10-12 16:33:31] 2025-10-12 20:33:31,158 [wrapper] cleanup supervisor_pilot 3441904 696761
[2025-10-12 16:33:31] 2025-10-12 20:33:31,163 [wrapper] Test setup, not cleaning
[2025-10-12 16:33:31] 2025-10-12 20:33:31,166 [wrapper] apfmon messages muted
[2025-10-12 16:33:31] 2025-10-12 20:33:31,169 [wrapper] ==== wrapper stdout END ====
[2025-10-12 16:33:31] 2025-10-12 20:33:31,177 [wrapper] ==== wrapper stderr END ====
[2025-10-12 16:33:31]  *** Error codes and diagnostics ***
[2025-10-12 16:33:31]     "exeErrorCode": 0,
[2025-10-12 16:33:31]     "exeErrorDiag": "",
[2025-10-12 16:33:31]     "pilotErrorCode": 0,
[2025-10-12 16:33:31]     "pilotErrorDiag": "",
[2025-10-12 16:33:31]  *** Listing of results directory ***
[2025-10-12 16:33:31] total 410112
[2025-10-12 16:33:31] -rw-r--r--. 1 boincer umatlas    557409 Oct 10 21:35 pilot3.tar.gz
[2025-10-12 16:33:31] -rw-r--r--. 1 boincer umatlas      5112 Oct 10 21:59 queuedata.json
[2025-10-12 16:33:31] -rwx------. 1 boincer umatlas     36292 Oct 10 21:59 runpilot2-wrapper.sh
[2025-10-12 16:33:31] -rw-r--r--. 1 boincer umatlas       100 Oct 12 00:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 16:33:31] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 12 00:04 run_atlas
[2025-10-12 16:33:31] -rw-r--r--. 1 boincer umatlas       105 Oct 12 00:04 job.xml
[2025-10-12 16:33:31] -rw-r--r--. 2 boincer umatlas 218823209 Oct 12 00:04 EVNT.46676267._001976.pool.root.1
[2025-10-12 16:33:31] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 00:04 start_atlas.sh
[2025-10-12 16:33:31] drwxrwx--x. 2 boincer umatlas      4096 Oct 12 00:04 shared
[2025-10-12 16:33:31] -rw-r--r--. 2 boincer umatlas    569679 Oct 12 00:04 input.tar.gz
[2025-10-12 16:33:31] -rw-r--r--. 1 boincer umatlas         0 Oct 12 00:04 boinc_lockfile
[2025-10-12 16:33:31] -rw-r--r--. 1 boincer umatlas      2549 Oct 12 00:04 pandaJob.out
[2025-10-12 16:33:31] -rw-------. 1 boincer umatlas    975512 Oct 12 00:07 agis_schedconf.cvmfs.json
[2025-10-12 16:33:31] drwx------. 5 boincer umatlas      4096 Oct 12 00:07 pilot3
[2025-10-12 16:33:31] -rw-r--r--. 1 boincer umatlas      6523 Oct 12 16:29 init_data.xml
[2025-10-12 16:33:31] -rw-------. 1 boincer umatlas 186102421 Oct 12 16:31 HITS.46676269._048992.pool.root.1
[2025-10-12 16:33:31] -rw-r--r--. 1 boincer umatlas       531 Oct 12 16:31 boinc_task_state.xml
[2025-10-12 16:33:31] -rw-------. 1 boincer umatlas      1037 Oct 12 16:32 memory_monitor_summary.json
[2025-10-12 16:33:31] -rw-------. 1 boincer umatlas   1560580 Oct 12 16:32 agis_ddmendpoints.agis.ALL.json
[2025-10-12 16:33:31] -rw-------. 1 boincer umatlas    816800 Oct 12 16:32 log.46676269._048992.job.log.tgz.1
[2025-10-12 16:33:31] -rw-------. 1 boincer umatlas        95 Oct 12 16:32 pilot_heartbeat.json
[2025-10-12 16:33:31] -rw-------. 1 boincer umatlas      7819 Oct 12 16:32 heartbeat.json
[2025-10-12 16:33:31] -rw-r--r--. 1 boincer umatlas      8192 Oct 12 16:32 boinc_mmap_file
[2025-10-12 16:33:31] -rw-r--r--. 1 boincer umatlas        28 Oct 12 16:32 wrapper_checkpoint.txt
[2025-10-12 16:33:31] -rw-------. 1 boincer umatlas      5081 Oct 12 16:33 pilotlog.txt
[2025-10-12 16:33:31] -rw-------. 1 boincer umatlas   4743750 Oct 12 16:33 log.46676269._048992.job.log.1
[2025-10-12 16:33:31] -rw-------. 1 boincer umatlas       357 Oct 12 16:33 output.list
[2025-10-12 16:33:31] -rw-r--r--. 1 boincer umatlas       620 Oct 12 16:33 runtime_log
[2025-10-12 16:33:31] -rw-------. 1 boincer umatlas   5580800 Oct 12 16:33 result.tar.gz
[2025-10-12 16:33:31] -rw-------. 1 boincer umatlas       658 Oct 12 16:33 T0tKDmd4dR8n9Rq4apOajLDm4fhM0noT9bVof3QYDmOxQMDmrk1KMo.diag
[2025-10-12 16:33:31] -rw-r--r--. 1 boincer umatlas      8699 Oct 12 16:33 runtime_log.err
[2025-10-12 16:33:31] -rw-r--r--. 1 boincer umatlas     21012 Oct 12 16:33 stderr.txt
[2025-10-12 16:33:31] HITS file was successfully produced:
[2025-10-12 16:33:31] -rw-------. 1 boincer umatlas 186102421 Oct 12 16:31 shared/HITS.pool.root.1
[2025-10-12 16:33:31]  *** Contents of shared directory: ***
[2025-10-12 16:33:31] total 401472
[2025-10-12 16:33:31] -rw-r--r--. 2 boincer umatlas 218823209 Oct 12 00:04 ATLAS.root_0
[2025-10-12 16:33:31] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 00:04 start_atlas.sh
[2025-10-12 16:33:31] -rw-r--r--. 2 boincer umatlas    569679 Oct 12 00:04 input.tar.gz
[2025-10-12 16:33:31] -rw-------. 1 boincer umatlas 186102421 Oct 12 16:31 HITS.pool.root.1
[2025-10-12 16:33:31] -rw-------. 1 boincer umatlas   5580800 Oct 12 16:33 result.tar.gz
16:33:32 (687679): run_atlas exited; CPU time 77691.535472
16:33:32 (687679): called boinc_finish(0)

</stderr_txt>
]]>

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