Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
04:35:56 (443850): wrapper (7.7.26015): starting
04:35:56 (443850): wrapper: running run_atlas (--nthreads 12)
[2025-10-11 04:35:56] Arguments: --nthreads 12
[2025-10-11 04:35:56] Threads: 12
[2025-10-11 04:35:56] Checking for CVMFS
[2025-10-11 04:35:56] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 04:35:56] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 04:35:56] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 04:35:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 04:35:57] 2.11.0.0 3299214 1149 85268 151572 2 188 5043583 6144001 14680 130560 0 22673789 100.000 44517 214 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2025-10-11 04:35:57] CVMFS is ok
[2025-10-11 04:35:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 04:35:57] Checking for apptainer binary...
[2025-10-11 04:35:57] apptainer is not installed, using version from CVMFS
[2025-10-11 04:35:57] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 04:35:57] radiat0r
[2025-10-11 04:35:57] apptainer works
[2025-10-11 04:35:57] Set ATHENA_PROC_NUMBER=12
[2025-10-11 04:35:57] Set ATHENA_CORE_NUMBER=12
[2025-10-11 04:35:57] Starting ATLAS job with PandaID=6837706448
[2025-10-11 04:35:57] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/19 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-11 05:29:22]  *** The last 200 lines of the pilot log: ***
[2025-10-11 05:29:22]  status_code=0
[2025-10-11 05:29:22]  storage_token=
[2025-10-11 05:29:22]  surl=/var/lib/boinc/slots/19/PanDA_Pilot-6837706448/log.46676269._042879.job.log.tgz.1
[2025-10-11 05:29:22]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/67/c9/log.46676269._042879.job.log.tgz.1
[2025-10-11 05:29:22]  workdir=None
[2025-10-11 05:29:22] ]
[2025-10-11 05:29:22] 2025-10-11 05:28:26,177 | INFO     | transferring file log.46676269._042879.job.log.tgz.1 from /var/lib/boinc/slots/19/PanDA_Pilot-6837706448/log.46676269._042879.job.log.tgz.1 to /var/lib/boinc/slots
[2025-10-11 05:29:22] 2025-10-11 05:28:26,177 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/19/PanDA_Pilot-6837706448/log.46676269._042879.job.log.tgz.1 /var/lib/boinc/slots/19/log.46676269._042879.j
[2025-10-11 05:29:22] 2025-10-11 05:28:26,206 | INFO     | adding to output.list: log.46676269._042879.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/67/c9/log.46676269._042879.job.log.tg
[2025-10-11 05:29:22] 2025-10-11 05:28:26,207 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-11 05:29:22] 2025-10-11 05:28:26,207 | INFO     | summary of transferred files:
[2025-10-11 05:29:22] 2025-10-11 05:28:26,207 | INFO     |  -- lfn=log.46676269._042879.job.log.tgz.1, status_code=0, status=transferred
[2025-10-11 05:29:22] 2025-10-11 05:28:26,208 | INFO     | stage-out finished correctly
[2025-10-11 05:29:22] 2025-10-11 05:28:27,187 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-11 05:29:22] 2025-10-11 05:28:27,367 | INFO     | time since job start (3136s) is within the limit (172800.0s)
[2025-10-11 05:29:22] 2025-10-11 05:28:27,870 | INFO     | monitor loop #219: job 0:6837706448 is in state 'finished'
[2025-10-11 05:29:22] 2025-10-11 05:28:27,870 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 05:29:22] 2025-10-11 05:28:29,309 | INFO     | job 6837706448 has state=finished
[2025-10-11 05:29:22] 2025-10-11 05:28:29,309 | INFO     | preparing for final server update for job 6837706448 in state='finished'
[2025-10-11 05:29:22] 2025-10-11 05:28:29,310 | INFO     | this job has now completed (state=finished)
[2025-10-11 05:29:22] 2025-10-11 05:28:29,310 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-11 05:29:22] 2025-10-11 05:28:29,311 | INFO     | log transfer has been attempted: DONE
[2025-10-11 05:29:22] 2025-10-11 05:28:29,311 | INFO     | job 6837706448 has finished - writing final server update
[2025-10-11 05:29:22] 2025-10-11 05:28:29,311 | INFO     | total number of processed events: 400 (read)
[2025-10-11 05:29:22] 2025-10-11 05:28:29,312 | INFO     | executing command: lscpu
[2025-10-11 05:29:22] 2025-10-11 05:28:29,373 | INFO     | time since job start (3138s) is within the limit (172800.0s)
[2025-10-11 05:29:22] 2025-10-11 05:28:29,466 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-11 05:29:22] 2025-10-11 05:28:30,374 | INFO     | monitor loop #220: job 0:6837706448 is in state 'finished'
[2025-10-11 05:29:22] 2025-10-11 05:28:30,374 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 05:29:22] 2025-10-11 05:28:31,379 | INFO     | time since job start (3140s) is within the limit (172800.0s)
[2025-10-11 05:29:22] 2025-10-11 05:28:32,877 | INFO     | monitor loop #221: job 0:6837706448 is in state 'finished'
[2025-10-11 05:29:22] 2025-10-11 05:28:32,877 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 05:29:22] 2025-10-11 05:28:33,384 | INFO     | time since job start (3142s) is within the limit (172800.0s)
[2025-10-11 05:29:22] 2025-10-11 05:28:35,378 | INFO     | monitor loop #222: job 0:6837706448 is in state 'finished'
[2025-10-11 05:29:22] 2025-10-11 05:28:35,379 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 05:29:22] 2025-10-11 05:28:35,388 | INFO     | time since job start (3144s) is within the limit (172800.0s)
[2025-10-11 05:29:22] 2025-10-11 05:28:36,020 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-11 05:29:22] 2025-10-11 05:28:36,082 | INFO     | found 128 cores (64 cores per socket, 2 sockets) HT, CPU MHz: 2333.0913125
[2025-10-11 05:29:22] 2025-10-11 05:28:36,171 | INFO     | using path: /var/lib/boinc/slots/19/PanDA_Pilot-6837706448/memory_monitor_summary.json (trf name=prmon)
[2025-10-11 05:29:22] 2025-10-11 05:28:36,172 | INFO     | extracted standard info from prmon json
[2025-10-11 05:29:22] 2025-10-11 05:28:36,172 | INFO     | extracted standard memory fields from prmon json
[2025-10-11 05:29:22] 2025-10-11 05:28:36,172 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-11 05:29:22] 2025-10-11 05:28:36,173 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-11 05:29:22] 2025-10-11 05:28:36,173 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-11 05:29:22] 2025-10-11 05:28:36,175 | INFO     | fitting pss+swap vs Time
[2025-10-11 05:29:22] 2025-10-11 05:28:36,175 | INFO     | sum of square deviations: 26400495.0
[2025-10-11 05:29:22] 2025-10-11 05:28:36,176 | INFO     | sum of deviations: 225125776.50000003
[2025-10-11 05:29:22] 2025-10-11 05:28:36,176 | INFO     | mean x: 1760159020.5
[2025-10-11 05:29:22] 2025-10-11 05:28:36,176 | INFO     | mean y: 2676280.8863636362
[2025-10-11 05:29:22] 2025-10-11 05:28:36,176 | INFO     | -- intersect: -15006783437.71141
[2025-10-11 05:29:22] 2025-10-11 05:28:36,176 | INFO     | intersect: -15006783437.71141
[2025-10-11 05:29:22] 2025-10-11 05:28:36,176 | INFO     | chi2: 0.001721466930785982
[2025-10-11 05:29:22] 2025-10-11 05:28:36,176 | INFO     | -- intersect: -15006783437.71141
[2025-10-11 05:29:22] 2025-10-11 05:28:36,177 | INFO     | current memory leak: 8.53 B/s (using 44 data points, chi2=0.00)
[2025-10-11 05:29:22] 2025-10-11 05:28:36,177 | INFO     | could have reported an average CPU frequency of 2336 MHz (5 samples)
[2025-10-11 05:29:22] 2025-10-11 05:28:36,177 | INFO     | ..............................
[2025-10-11 05:29:22] 2025-10-11 05:28:36,177 | INFO     | . Timing measurements:
[2025-10-11 05:29:22] 2025-10-11 05:28:36,177 | INFO     | . get job = 0 s
[2025-10-11 05:29:22] 2025-10-11 05:28:36,177 | INFO     | . initial setup = 1 s
[2025-10-11 05:29:22] 2025-10-11 05:28:36,177 | INFO     | . payload setup = 7 s
[2025-10-11 05:29:22] 2025-10-11 05:28:36,178 | INFO     | . stage-in = 0 s
[2025-10-11 05:29:22] 2025-10-11 05:28:36,178 | INFO     | . payload execution = 3104 s
[2025-10-11 05:29:22] 2025-10-11 05:28:36,178 | INFO     | . stage-out = 0 s
[2025-10-11 05:29:22] 2025-10-11 05:28:36,178 | INFO     | . log creation = 0 s
[2025-10-11 05:29:22] 2025-10-11 05:28:36,178 | INFO     | ..............................
[2025-10-11 05:29:22] 2025-10-11 05:28:36,275 | INFO     | 
[2025-10-11 05:29:22] 2025-10-11 05:28:36,276 | INFO     | job summary report
[2025-10-11 05:29:22] 2025-10-11 05:28:36,276 | INFO     | --------------------------------------------------
[2025-10-11 05:29:22] 2025-10-11 05:28:36,276 | INFO     | PanDA job id: 6837706448
[2025-10-11 05:29:22] 2025-10-11 05:28:36,276 | INFO     | task id: 46676269
[2025-10-11 05:29:22] 2025-10-11 05:28:36,276 | INFO     | errors: (none)
[2025-10-11 05:29:22] 2025-10-11 05:28:36,276 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-11 05:29:22] 2025-10-11 05:28:36,276 | INFO     | pilot state: finished 
[2025-10-11 05:29:22] 2025-10-11 05:28:36,277 | INFO     | transexitcode: 0
[2025-10-11 05:29:22] 2025-10-11 05:28:36,277 | INFO     | exeerrorcode: 0
[2025-10-11 05:29:22] 2025-10-11 05:28:36,277 | INFO     | exeerrordiag: 
[2025-10-11 05:29:22] 2025-10-11 05:28:36,277 | INFO     | exitcode: 0
[2025-10-11 05:29:22] 2025-10-11 05:28:36,277 | INFO     | exitmsg: OK
[2025-10-11 05:29:22] 2025-10-11 05:28:36,277 | INFO     | cpuconsumptiontime: 32355 s
[2025-10-11 05:29:22] 2025-10-11 05:28:36,277 | INFO     | nevents: 400
[2025-10-11 05:29:22] 2025-10-11 05:28:36,277 | INFO     | neventsw: 0
[2025-10-11 05:29:22] 2025-10-11 05:28:36,277 | INFO     | pid: 456785
[2025-10-11 05:29:22] 2025-10-11 05:28:36,277 | INFO     | pgrp: 456785
[2025-10-11 05:29:22] 2025-10-11 05:28:36,277 | INFO     | corecount: 12
[2025-10-11 05:29:22] 2025-10-11 05:28:36,277 | INFO     | event service: False
[2025-10-11 05:29:22] 2025-10-11 05:28:36,278 | INFO     | sizes: {0: 2348858, 7: 2349120, 11: 2349148, 3115: 2374834, 3117: 2383834, 3118: 2383890, 3127: 2384244}
[2025-10-11 05:29:22] 2025-10-11 05:28:36,278 | INFO     | --------------------------------------------------
[2025-10-11 05:29:22] 2025-10-11 05:28:36,278 | INFO     | 
[2025-10-11 05:29:22] 2025-10-11 05:28:36,278 | INFO     | executing command: ls -lF /var/lib/boinc/slots/19
[2025-10-11 05:29:22] 2025-10-11 05:28:36,308 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-11 05:29:22] 2025-10-11 05:28:36,309 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-11 05:29:22] 2025-10-11 05:28:36,309 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-11 05:29:22] 2025-10-11 05:28:36,309 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-11 05:29:22] 2025-10-11 05:28:36,309 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-11 05:29:22] 2025-10-11 05:28:36,309 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-11 05:29:22] 2025-10-11 05:28:36,309 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-11 05:29:22] 2025-10-11 05:28:36,309 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-11 05:29:22] 2025-10-11 05:28:36,309 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-11 05:29:22] 2025-10-11 05:28:36,309 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-11 05:29:22] 2025-10-11 05:28:36,309 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-11 05:29:22] 2025-10-11 05:28:36,309 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-11 05:29:22] 2025-10-11 05:28:36,310 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-11 05:29:22] 2025-10-11 05:28:36,310 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-11 05:29:22] 2025-10-11 05:28:36,310 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-11 05:29:22] 2025-10-11 05:28:36,310 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-11 05:29:22] 2025-10-11 05:28:36,310 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-11 05:29:22] 2025-10-11 05:28:36,310 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-11 05:29:22] 2025-10-11 05:28:36,310 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-11 05:29:22] 2025-10-11 05:28:36,310 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-11 05:29:22] 2025-10-11 05:28:36,310 | INFO     | job 6837706448 has completed (purged errors)
[2025-10-11 05:29:22] 2025-10-11 05:28:36,311 | INFO     | overall cleanup function is called
[2025-10-11 05:29:22] 2025-10-11 05:28:37,320 | INFO     | --- collectZombieJob: --- 10, [456785]
[2025-10-11 05:29:22] 2025-10-11 05:28:37,320 | INFO     | zombie collector waiting for pid 456785
[2025-10-11 05:29:22] 2025-10-11 05:28:37,320 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-11 05:29:22] 2025-10-11 05:28:37,320 | INFO     | collected zombie processes
[2025-10-11 05:29:22] 2025-10-11 05:28:37,321 | INFO     | will attempt to kill all subprocesses of pid=456785
[2025-10-11 05:29:22] 2025-10-11 05:28:38,190 | INFO     | process IDs to be killed: [456785] (in reverse order)
[2025-10-11 05:29:22] 2025-10-11 05:28:38,464 | WARNING  | found no corresponding commands to process id(s)
[2025-10-11 05:29:22] 2025-10-11 05:28:38,464 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-11 05:29:22] 2025-10-11 05:28:38,492 | INFO     | did not find any defunct processes belonging to 456785
[2025-10-11 05:29:22] 2025-10-11 05:28:38,517 | INFO     | did not find any defunct processes belonging to 456785
[2025-10-11 05:29:22] 2025-10-11 05:28:38,518 | INFO     | ready for new job
[2025-10-11 05:29:22] 2025-10-11 05:28:38,518 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-11 05:29:22] 2025-10-11 05:28:38,522 | INFO     | ***************************************
[2025-10-11 05:29:22] 2025-10-11 05:28:38,522 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-11 05:29:22] 2025-10-11 05:28:38,522 | INFO     | ***************************************
[2025-10-11 05:29:22] 2025-10-11 05:28:38,522 | INFO     | 
[2025-10-11 05:29:22] 2025-10-11 05:28:38,562 | INFO     | architecture information:
[2025-10-11 05:29:22] 2025-10-11 05:28:38,563 | INFO     | executing command: cat /etc/os-release
[2025-10-11 05:29:22] 2025-10-11 05:28:38,587 | INFO     | cat /etc/os-release:
[2025-10-11 05:29:22] NAME="CentOS Linux"
[2025-10-11 05:29:22] VERSION="7 (Core)"
[2025-10-11 05:29:22] ID="centos"
[2025-10-11 05:29:22] ID_LIKE="rhel fedora"
[2025-10-11 05:29:22] VERSION_ID="7"
[2025-10-11 05:29:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-11 05:29:22] ANSI_COLOR="0;31"
[2025-10-11 05:29:22] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-11 05:29:22] HOME_URL="https://www.centos.org/"
[2025-10-11 05:29:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-11 05:29:22] 
[2025-10-11 05:29:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-11 05:29:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-11 05:29:22] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-11 05:29:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-11 05:29:22] 
[2025-10-11 05:29:22] 2025-10-11 05:28:38,588 | INFO     | ***************************************
[2025-10-11 05:29:22] 2025-10-11 05:28:39,091 | INFO     | executing command: df -mP /var/lib/boinc/slots/19
[2025-10-11 05:29:22] 2025-10-11 05:28:39,121 | INFO     | sufficient remaining disk space (1725894230016 B)
[2025-10-11 05:29:22] 2025-10-11 05:28:39,122 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-11 05:29:22] 2025-10-11 05:28:39,122 | INFO     | current server update state: UPDATING_FINAL
[2025-10-11 05:29:22] 2025-10-11 05:28:39,122 | INFO     | update_server=False
[2025-10-11 05:29:22] 2025-10-11 05:28:39,122 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-11 05:29:22] 2025-10-11 05:28:39,123 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-11 05:29:22] 2025-10-11 05:28:39,123 | INFO     | aborting loop
[2025-10-11 05:29:22] 2025-10-11 05:28:39,226 | INFO     | all payload control threads have been joined
[2025-10-11 05:29:22] 2025-10-11 05:28:39,318 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-11 05:29:22] 2025-10-11 05:28:39,491 | INFO     | all data control threads have been joined
[2025-10-11 05:29:22] 2025-10-11 05:28:40,126 | INFO     | [job] retrieve thread has finished
[2025-10-11 05:29:22] 2025-10-11 05:28:40,128 | INFO     | [job] job monitor thread has finished
[2025-10-11 05:29:22] 2025-10-11 05:28:40,230 | INFO     | [payload] control thread has finished
[2025-10-11 05:29:22] 2025-10-11 05:28:40,270 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-11 05:29:22] 2025-10-11 05:28:40,339 | INFO     | [payload] validate_pre thread has finished
[2025-10-11 05:29:22] 2025-10-11 05:28:40,460 | INFO     | [payload] validate_post thread has finished
[2025-10-11 05:29:22] 2025-10-11 05:28:40,496 | INFO     | [data] control thread has finished
[2025-10-11 05:29:22] 2025-10-11 05:28:40,532 | INFO     | all job control threads have been joined
[2025-10-11 05:29:22] 2025-10-11 05:28:40,681 | INFO     | [payload] execute_payloads thread has finished
[2025-10-11 05:29:22] 2025-10-11 05:28:41,282 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-11 05:29:22] 2025-10-11 05:28:41,322 | INFO     | [data] copytool_out thread has finished
[2025-10-11 05:29:22] 2025-10-11 05:28:41,470 | INFO     | [data] copytool_in thread has finished
[2025-10-11 05:29:22] 2025-10-11 05:28:41,537 | INFO     | [job] control thread has finished
[2025-10-11 05:29:22] 2025-10-11 05:28:41,559 | INFO     | [job] validate thread has finished
[2025-10-11 05:29:22] 2025-10-11 05:28:41,586 | INFO     | [payload] failed_post thread has finished
[2025-10-11 05:29:22] 2025-10-11 05:28:41,622 | INFO     | [job] create_data_payload thread has finished
[2025-10-11 05:29:22] 2025-10-11 05:28:42,288 | INFO     | [job] queue monitor thread has finished
[2025-10-11 05:29:22] 2025-10-11 05:28:42,296 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-11 05:29:22] 2025-10-11 05:28:46,302 | INFO     | [data] queue_monitor thread has finished
[2025-10-11 05:29:22] 2025-10-11 05:29:09,311 | INFO     | PID=448587 has CPU usage=10.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-11 05:29:22] 2025-10-11 05:29:09,311 | INFO     | .. there are 17 such processes running
[2025-10-11 05:29:22] 2025-10-11 05:29:09,312 | INFO     | found 0 job(s) in 20 queues
[2025-10-11 05:29:22] 2025-10-11 05:29:09,312 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-11 05:29:22] 2025-10-11 05:29:09,312 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-11 05:29:22] 2025-10-11 05:29:15,314 | INFO     | [monitor] cgroup control has ended
[2025-10-11 05:29:22] 2025-10-11 05:29:16,504 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139776072771392)>', '<ExcThread(monitor, started 139775331784448)>']
[2025-10-11 05:29:22] 2025-10-11 05:29:17,350 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-11 05:29:22] 2025-10-11 05:29:17,350 | INFO     | [monitor] control thread has ended
[2025-10-11 05:29:22] 2025-10-11 05:29:21,526 | INFO     | all workflow threads have been joined
[2025-10-11 05:29:22] 2025-10-11 05:29:21,527 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-11 05:29:22] 2025-10-11 05:29:21,527 | INFO     | traces error code: 0
[2025-10-11 05:29:22] 2025-10-11 05:29:21,527 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-11 05:29:22] 2025-10-11 05:29:21,715 [wrapper] ==== pilot stdout END ====
[2025-10-11 05:29:22] 2025-10-11 05:29:21,719 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-11 05:29:22] 2025-10-11 05:29:21,722 [wrapper] pilotpid: 448587
[2025-10-11 05:29:22] 2025-10-11 05:29:21,726 [wrapper] Pilot exit status: 0
[2025-10-11 05:29:22] 2025-10-11 05:29:21,738 [wrapper] pandaids: 6837706448
[2025-10-11 05:29:22] 2025-10-11 05:29:21,913 [wrapper] cleanup supervisor_pilot  815103 448588
[2025-10-11 05:29:22] 2025-10-11 05:29:21,917 [wrapper] Test setup, not cleaning
[2025-10-11 05:29:22] 2025-10-11 05:29:21,921 [wrapper] apfmon messages muted
[2025-10-11 05:29:22] 2025-10-11 05:29:21,924 [wrapper] ==== wrapper stdout END ====
[2025-10-11 05:29:22] 2025-10-11 05:29:21,927 [wrapper] ==== wrapper stderr END ====
[2025-10-11 05:29:22]  *** Error codes and diagnostics ***
[2025-10-11 05:29:22]     "exeErrorCode": 0,
[2025-10-11 05:29:22]     "exeErrorDiag": "",
[2025-10-11 05:29:22]     "pilotErrorCode": 0,
[2025-10-11 05:29:22]     "pilotErrorDiag": "",
[2025-10-11 05:29:22]  *** Listing of results directory ***
[2025-10-11 05:29:22] total 413336
[2025-10-11 05:29:22] -rw-r--r-- 1 boinc boinc    557409 Oct 10 18:07 pilot3.tar.gz
[2025-10-11 05:29:22] -rwx------ 1 boinc boinc     36292 Oct 10 18:12 runpilot2-wrapper.sh
[2025-10-11 05:29:22] -rw-r--r-- 1 boinc boinc      5112 Oct 10 18:12 queuedata.json
[2025-10-11 05:29:22] -rw-r--r-- 1 boinc boinc       100 Oct 11 04:35 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-11 05:29:22] -rwxr-xr-x 1 boinc boinc      7986 Oct 11 04:35 run_atlas
[2025-10-11 05:29:22] -rw-r--r-- 1 boinc boinc       105 Oct 11 04:35 job.xml
[2025-10-11 05:29:22] -rw-r--r-- 2 boinc boinc     15120 Oct 11 04:35 start_atlas.sh
[2025-10-11 05:29:22] drwxrwx--x 2 boinc boinc      4096 Oct 11 04:35 shared
[2025-10-11 05:29:22] -rw-r--r-- 2 boinc boinc    569682 Oct 11 04:35 input.tar.gz
[2025-10-11 05:29:22] -rw-r--r-- 2 boinc boinc 223471163 Oct 11 04:35 EVNT.46676267._001736.pool.root.1
[2025-10-11 05:29:22] -rw-r--r-- 1 boinc boinc         0 Oct 11 04:35 boinc_setup_complete
[2025-10-11 05:29:22] -rw-r--r-- 1 boinc boinc      9396 Oct 11 04:35 init_data.xml
[2025-10-11 05:29:22] -rw-r--r-- 1 boinc boinc         0 Oct 11 04:35 boinc_lockfile
[2025-10-11 05:29:22] -rw-r--r-- 1 boinc boinc      2550 Oct 11 04:35 pandaJob.out
[2025-10-11 05:29:22] -rw------- 1 boinc boinc    975517 Oct 11 04:36 agis_schedconf.cvmfs.json
[2025-10-11 05:29:22] -rw------- 1 boinc boinc   1560580 Oct 11 04:36 agis_ddmendpoints.agis.ALL.json
[2025-10-11 05:29:22] drwx------ 5 boinc boinc      4096 Oct 11 04:36 pilot3
[2025-10-11 05:29:22] -rw------- 1 boinc boinc 194198190 Oct 11 05:27 HITS.46676269._042879.pool.root.1
[2025-10-11 05:29:22] -rw-r--r-- 1 boinc boinc       529 Oct 11 05:28 boinc_task_state.xml
[2025-10-11 05:29:22] -rw------- 1 boinc boinc      1029 Oct 11 05:28 memory_monitor_summary.json
[2025-10-11 05:29:22] -rw------- 1 boinc boinc    371356 Oct 11 05:28 log.46676269._042879.job.log.tgz.1
[2025-10-11 05:29:22] -rw------- 1 boinc boinc      7742 Oct 11 05:28 heartbeat.json
[2025-10-11 05:29:22] -rw------- 1 boinc boinc        95 Oct 11 05:29 pilot_heartbeat.json
[2025-10-11 05:29:22] -rw------- 1 boinc boinc      4827 Oct 11 05:29 pilotlog.txt
[2025-10-11 05:29:22] -rw-r--r-- 1 boinc boinc      8192 Oct 11 05:29 boinc_mmap_file
[2025-10-11 05:29:22] -rw------- 1 boinc boinc    465437 Oct 11 05:29 log.46676269._042879.job.log.1
[2025-10-11 05:29:22] -rw------- 1 boinc boinc       357 Oct 11 05:29 output.list
[2025-10-11 05:29:22] -rw-r--r-- 1 boinc boinc       620 Oct 11 05:29 runtime_log
[2025-10-11 05:29:22] -rw------- 1 boinc boinc    860160 Oct 11 05:29 result.tar.gz
[2025-10-11 05:29:22] -rw-r--r-- 1 boinc boinc        27 Oct 11 05:29 wrapper_checkpoint.txt
[2025-10-11 05:29:22] -rw-r--r-- 1 boinc boinc      8672 Oct 11 05:29 runtime_log.err
[2025-10-11 05:29:22] -rw------- 1 boinc boinc       643 Oct 11 05:29 2X8NDmhmWR8n9Rq4apOajLDm4fhM0noT9bVof3QYDmCMQMDmsEYcyn.diag
[2025-10-11 05:29:22] -rw-r--r-- 1 boinc boinc     21813 Oct 11 05:29 stderr.txt
[2025-10-11 05:29:22] HITS file was successfully produced:
[2025-10-11 05:29:22] -rw------- 1 boinc boinc 194198190 Oct 11 05:27 shared/HITS.pool.root.1
[2025-10-11 05:29:22]  *** Contents of shared directory: ***
[2025-10-11 05:29:22] total 409308
[2025-10-11 05:29:22] -rw-r--r-- 2 boinc boinc     15120 Oct 11 04:35 start_atlas.sh
[2025-10-11 05:29:22] -rw-r--r-- 2 boinc boinc    569682 Oct 11 04:35 input.tar.gz
[2025-10-11 05:29:22] -rw-r--r-- 2 boinc boinc 223471163 Oct 11 04:35 ATLAS.root_0
[2025-10-11 05:29:22] -rw------- 1 boinc boinc 194198190 Oct 11 05:27 HITS.pool.root.1
[2025-10-11 05:29:22] -rw------- 1 boinc boinc    860160 Oct 11 05:29 result.tar.gz
05:29:23 (443850): run_atlas exited; CPU time 32542.475865
05:29:23 (443850): called boinc_finish(0)

</stderr_txt>
]]>

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