Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:03:57 (653040): wrapper (7.7.26015): starting
00:03:57 (653040): wrapper: running run_atlas (--nthreads 9)
[2025-10-11 00:03:57] Arguments: --nthreads 9
[2025-10-11 00:03:57] Threads: 9
[2025-10-11 00:03:57] Checking for CVMFS
[2025-10-11 00:03:58] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 00:03:58] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 00:03:58] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 00:04:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 00:04:00] 2.13.2.0 4249 72492 407912 151571 0 99 34191564 39288832 22166 16776704 0 123706059 99.527 155951293 29519 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-11 00:04:00] CVMFS is ok
[2025-10-11 00:04:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 00:04:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 00:04:00] Further information can be found at the LHC@home message board.
[2025-10-11 00:04:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 00:04:00] Checking for apptainer binary...
[2025-10-11 00:04:00] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 00:04:00] Running /usr/bin/apptainer --version
[2025-10-11 00:04:00] apptainer version 1.4.3-1.el9
[2025-10-11 00:04:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 00:04:01] c-211-29.aglt2.org
[2025-10-11 00:04:01] apptainer works
[2025-10-11 00:04:02] Set ATHENA_PROC_NUMBER=9
[2025-10-11 00:04:02] Set ATHENA_CORE_NUMBER=9
[2025-10-11 00:04:02] Starting ATLAS job with PandaID=6837932138
[2025-10-11 00:04:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 13:08:38]  *** The last 200 lines of the pilot log: ***
[2025-10-12 13:08:38] 2025-10-12 17:05:22,709 | INFO     | sum of square deviations: 3212549668695.379
[2025-10-12 13:08:38] 2025-10-12 17:05:22,790 | INFO     | time since job start (133174s) is within the limit (172800.0s)
[2025-10-12 13:08:38] 2025-10-12 17:05:22,846 | INFO     | sum of deviations: 2769334473716.7847
[2025-10-12 13:08:38] 2025-10-12 17:05:22,846 | INFO     | mean x: 1760222219.8100917
[2025-10-12 13:08:38] 2025-10-12 17:05:22,846 | INFO     | mean y: 2541314.2458715597
[2025-10-12 13:08:38] 2025-10-12 17:05:22,846 | INFO     | -- intersect: -1514834159.2676542
[2025-10-12 13:08:38] 2025-10-12 17:05:22,847 | INFO     | intersect: -1514834159.2676542
[2025-10-12 13:08:38] 2025-10-12 17:05:22,849 | INFO     | chi2: 6.267919828299211
[2025-10-12 13:08:38] 2025-10-12 17:05:22,853 | INFO     | sum of square deviations: 3190495935789.8975
[2025-10-12 13:08:38] 2025-10-12 17:05:22,998 | INFO     | sum of deviations: 2897455864653.7617
[2025-10-12 13:08:38] 2025-10-12 17:05:22,998 | INFO     | mean x: 1760222067.3108046
[2025-10-12 13:08:38] 2025-10-12 17:05:22,999 | INFO     | mean y: 2542198.376091954
[2025-10-12 13:08:38] 2025-10-12 17:05:22,999 | INFO     | -- intersect: -1596007323.2862728
[2025-10-12 13:08:38] 2025-10-12 17:05:22,999 | INFO     | intersect: -1596007323.2862728
[2025-10-12 13:08:38] 2025-10-12 17:05:23,002 | INFO     | chi2: 5.579813128315025
[2025-10-12 13:08:38] 2025-10-12 17:05:23,002 | INFO     | current chi2=5.579813128315025 (change=10.97823071822701 %)
[2025-10-12 13:08:38] 2025-10-12 17:05:23,002 | INFO     | right removable region: 2174
[2025-10-12 13:08:38] 2025-10-12 17:05:23,005 | INFO     | sum of square deviations: 3190495656287.522
[2025-10-12 13:08:38] 2025-10-12 17:05:23,136 | INFO     | sum of deviations: 2059664249850.5544
[2025-10-12 13:08:38] 2025-10-12 17:05:23,137 | INFO     | mean x: 1760222372.310345
[2025-10-12 13:08:38] 2025-10-12 17:05:23,137 | INFO     | mean y: 2546220.691034483
[2025-10-12 13:08:38] 2025-10-12 17:05:23,137 | INFO     | -- intersect: -1133787278.1150298
[2025-10-12 13:08:38] 2025-10-12 17:05:23,137 | INFO     | intersect: -1133787278.1150298
[2025-10-12 13:08:38] 2025-10-12 17:05:23,140 | INFO     | chi2: 2.6571460347475906
[2025-10-12 13:08:38] 2025-10-12 17:05:23,141 | INFO     | current chi2=2.6571460347475906 (change=57.60721088437083 %)
[2025-10-12 13:08:38] 2025-10-12 17:05:23,143 | INFO     | sum of square deviations: 3168542940997.773
[2025-10-12 13:08:38] 2025-10-12 17:05:23,483 | INFO     | sum of deviations: 1662738501140.2954
[2025-10-12 13:08:38] 2025-10-12 17:05:23,483 | INFO     | mean x: 1760222524.8101382
[2025-10-12 13:08:38] 2025-10-12 17:05:23,483 | INFO     | mean y: 2548977.0686635943
[2025-10-12 13:08:38] 2025-10-12 17:05:23,483 | INFO     | -- intersect: -921153121.0492021
[2025-10-12 13:08:38] 2025-10-12 17:05:23,484 | INFO     | intersect: -921153121.0492021
[2025-10-12 13:08:38] 2025-10-12 17:05:23,486 | INFO     | chi2: 1.4946539918692165
[2025-10-12 13:08:38] 2025-10-12 17:05:23,487 | INFO     | current chi2=1.4946539918692165 (change=43.74964821942134 %)
[2025-10-12 13:08:38] 2025-10-12 17:05:23,490 | INFO     | sum of square deviations: 3146691025707.414
[2025-10-12 13:08:38] 2025-10-12 17:05:23,626 | INFO     | sum of deviations: 1440714304590.729
[2025-10-12 13:08:38] 2025-10-12 17:05:23,627 | INFO     | mean x: 1760222677.3103926
[2025-10-12 13:08:38] 2025-10-12 17:05:23,627 | INFO     | mean y: 2550526.3099307157
[2025-10-12 13:08:38] 2025-10-12 17:05:23,627 | INFO     | -- intersect: -803368443.7281127
[2025-10-12 13:08:38] 2025-10-12 17:05:23,627 | INFO     | intersect: -803368443.7281127
[2025-10-12 13:08:38] 2025-10-12 17:05:23,630 | INFO     | chi2: 1.166449350517516
[2025-10-12 13:08:38] 2025-10-12 17:05:23,630 | INFO     | current chi2=1.166449350517516 (change=21.95856988554571 %)
[2025-10-12 13:08:38] 2025-10-12 17:05:23,631 | INFO     | left removable region: 30
[2025-10-12 13:08:38] 2025-10-12 17:05:23,634 | INFO     | sum of square deviations: 3056009981875.9985
[2025-10-12 13:08:38] 2025-10-12 17:05:23,804 | INFO     | sum of deviations: 1171678819340.2344
[2025-10-12 13:08:38] 2025-10-12 17:05:23,804 | INFO     | mean x: 1760222951.8129663
[2025-10-12 13:08:38] 2025-10-12 17:05:23,804 | INFO     | mean y: 2554231.3297574627
[2025-10-12 13:08:38] 2025-10-12 17:05:23,805 | INFO     | -- intersect: -672317893.4954827
[2025-10-12 13:08:38] 2025-10-12 17:05:23,805 | INFO     | intersect: -672317893.4954827
[2025-10-12 13:08:38] 2025-10-12 17:05:23,808 | INFO     | chi2: 0.13058173913746357
[2025-10-12 13:08:38] 2025-10-12 17:05:23,808 | INFO     | -- intersect: -672317893.4954827
[2025-10-12 13:08:38] 2025-10-12 17:05:23,809 | INFO     | current memory leak: 0.38 B/s (using 2144 data points, chi2=0.13)
[2025-10-12 13:08:38] 2025-10-12 17:05:23,811 | INFO     | could have reported an average CPU frequency of 2899 MHz (76 samples)
[2025-10-12 13:08:38] 2025-10-12 17:05:23,811 | INFO     | ..............................
[2025-10-12 13:08:38] 2025-10-12 17:05:23,811 | INFO     | . Timing measurements:
[2025-10-12 13:08:38] 2025-10-12 17:05:23,812 | INFO     | . get job = 0 s
[2025-10-12 13:08:38] 2025-10-12 17:05:23,812 | INFO     | . initial setup = 8 s
[2025-10-12 13:08:38] 2025-10-12 17:05:23,812 | INFO     | . payload setup = 71 s
[2025-10-12 13:08:38] 2025-10-12 17:05:23,812 | INFO     | . stage-in = 0 s
[2025-10-12 13:08:38] 2025-10-12 17:05:23,812 | INFO     | . payload execution = 132994 s
[2025-10-12 13:08:38] 2025-10-12 17:05:23,812 | INFO     | . stage-out = 3 s
[2025-10-12 13:08:38] 2025-10-12 17:05:23,813 | INFO     | . log creation = 0 s
[2025-10-12 13:08:38] 2025-10-12 17:05:23,813 | INFO     | ..............................
[2025-10-12 13:08:38] 2025-10-12 17:05:24,259 | INFO     | 
[2025-10-12 13:08:38] 2025-10-12 17:05:24,260 | INFO     | job summary report
[2025-10-12 13:08:38] 2025-10-12 17:05:24,260 | INFO     | --------------------------------------------------
[2025-10-12 13:08:38] 2025-10-12 17:05:24,260 | INFO     | PanDA job id: 6837932138
[2025-10-12 13:08:38] 2025-10-12 17:05:24,260 | INFO     | task id: 46676269
[2025-10-12 13:08:38] 2025-10-12 17:05:24,260 | INFO     | errors: (none)
[2025-10-12 13:08:38] 2025-10-12 17:05:24,261 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 13:08:38] 2025-10-12 17:05:24,261 | INFO     | pilot state: finished 
[2025-10-12 13:08:38] 2025-10-12 17:05:24,261 | INFO     | transexitcode: 0
[2025-10-12 13:08:38] 2025-10-12 17:05:24,261 | INFO     | exeerrorcode: 0
[2025-10-12 13:08:38] 2025-10-12 17:05:24,261 | INFO     | exeerrordiag: 
[2025-10-12 13:08:38] 2025-10-12 17:05:24,261 | INFO     | exitcode: 0
[2025-10-12 13:08:38] 2025-10-12 17:05:24,262 | INFO     | exitmsg: OK
[2025-10-12 13:08:38] 2025-10-12 17:05:24,262 | INFO     | cpuconsumptiontime: 80003 s
[2025-10-12 13:08:38] 2025-10-12 17:05:24,262 | INFO     | nevents: 400
[2025-10-12 13:08:38] 2025-10-12 17:05:24,262 | INFO     | neventsw: 0
[2025-10-12 13:08:38] 2025-10-12 17:05:24,262 | INFO     | pid: 697306
[2025-10-12 13:08:38] 2025-10-12 17:05:24,262 | INFO     | pgrp: 697306
[2025-10-12 13:08:38] 2025-10-12 17:05:24,263 | INFO     | corecount: 9
[2025-10-12 13:08:38] 2025-10-12 17:05:24,263 | INFO     | event service: False
[2025-10-12 13:08:38] 2025-10-12 17:05:24,263 | INFO     | sizes: {0: 2348686, 1: 2348885, 2: 2348913, 13: 2348913, 24: 2348969, 35: 2348997, 41: 2349415, 47: 2349443, 133070: 2435443, 133071: 2435442, 133077: 2444832, 133
[2025-10-12 13:08:38] 2025-10-12 17:05:24,263 | INFO     | --------------------------------------------------
[2025-10-12 13:08:38] 2025-10-12 17:05:24,263 | INFO     | 
[2025-10-12 13:08:38] 2025-10-12 17:05:24,278 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-10-12 13:08:38] 2025-10-12 17:05:24,320 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 13:08:38] 2025-10-12 17:05:24,320 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 13:08:38] 2025-10-12 17:05:24,320 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 13:08:38] 2025-10-12 17:05:24,321 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 13:08:38] 2025-10-12 17:05:24,321 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 13:08:38] 2025-10-12 17:05:24,321 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 13:08:38] 2025-10-12 17:05:24,321 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 13:08:38] 2025-10-12 17:05:24,321 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 13:08:38] 2025-10-12 17:05:24,321 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 13:08:38] 2025-10-12 17:05:24,322 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 13:08:38] 2025-10-12 17:05:24,322 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 13:08:38] 2025-10-12 17:05:24,322 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 13:08:38] 2025-10-12 17:05:24,322 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 13:08:38] 2025-10-12 17:05:24,322 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 13:08:38] 2025-10-12 17:05:24,322 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 13:08:38] 2025-10-12 17:05:24,323 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 13:08:38] 2025-10-12 17:05:24,323 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 13:08:38] 2025-10-12 17:05:24,323 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 13:08:38] 2025-10-12 17:05:24,323 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 13:08:38] 2025-10-12 17:05:24,323 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 13:08:38] 2025-10-12 17:05:24,330 | INFO     | job 6837932138 has completed (purged errors)
[2025-10-12 13:08:38] 2025-10-12 17:05:24,330 | INFO     | overall cleanup function is called
[2025-10-12 13:08:38] 2025-10-12 17:05:25,353 | INFO     | --- collectZombieJob: --- 10, [697306]
[2025-10-12 13:08:38] 2025-10-12 17:05:25,354 | INFO     | zombie collector waiting for pid 697306
[2025-10-12 13:08:38] 2025-10-12 17:05:25,354 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 13:08:38] 2025-10-12 17:05:25,354 | INFO     | collected zombie processes
[2025-10-12 13:08:38] 2025-10-12 17:05:25,354 | INFO     | will attempt to kill all subprocesses of pid=697306
[2025-10-12 13:08:38] 2025-10-12 17:05:25,940 | INFO     | process IDs to be killed: [697306] (in reverse order)
[2025-10-12 13:08:38] 2025-10-12 17:05:26,257 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 13:08:38] 2025-10-12 17:05:26,257 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 13:08:38] 2025-10-12 17:05:26,283 | INFO     | did not find any defunct processes belonging to 697306
[2025-10-12 13:08:38] 2025-10-12 17:05:26,307 | INFO     | did not find any defunct processes belonging to 697306
[2025-10-12 13:08:38] 2025-10-12 17:05:26,308 | INFO     | ready for new job
[2025-10-12 13:08:38] 2025-10-12 17:05:26,308 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 13:08:38] 2025-10-12 17:05:26,317 | INFO     | ***************************************
[2025-10-12 13:08:38] 2025-10-12 17:05:26,317 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 13:08:38] 2025-10-12 17:05:26,317 | INFO     | ***************************************
[2025-10-12 13:08:38] 2025-10-12 17:05:26,317 | INFO     | 
[2025-10-12 13:08:38] 2025-10-12 17:05:26,319 | INFO     | architecture information:
[2025-10-12 13:08:38] 2025-10-12 17:05:26,319 | INFO     | executing command: cat /etc/os-release
[2025-10-12 13:08:38] 2025-10-12 17:05:26,343 | INFO     | cat /etc/os-release:
[2025-10-12 13:08:38] NAME="CentOS Linux"
[2025-10-12 13:08:38] VERSION="7 (Core)"
[2025-10-12 13:08:38] ID="centos"
[2025-10-12 13:08:38] ID_LIKE="rhel fedora"
[2025-10-12 13:08:38] VERSION_ID="7"
[2025-10-12 13:08:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 13:08:38] ANSI_COLOR="0;31"
[2025-10-12 13:08:38] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 13:08:38] HOME_URL="https://www.centos.org/"
[2025-10-12 13:08:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 13:08:38] 
[2025-10-12 13:08:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 13:08:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 13:08:38] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 13:08:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 13:08:38] 
[2025-10-12 13:08:38] 2025-10-12 17:05:26,343 | INFO     | ***************************************
[2025-10-12 13:08:38] 2025-10-12 17:05:26,846 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-10-12 13:08:38] 2025-10-12 17:05:26,904 | INFO     | sufficient remaining disk space (51150585856 B)
[2025-10-12 13:08:38] 2025-10-12 17:05:26,905 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 13:08:38] 2025-10-12 17:05:26,905 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 13:08:38] 2025-10-12 17:05:26,905 | INFO     | update_server=False
[2025-10-12 13:08:38] 2025-10-12 17:05:26,906 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 13:08:38] 2025-10-12 17:05:26,949 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 13:08:38] 2025-10-12 17:05:27,263 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-12 13:08:38] 2025-10-12 17:05:27,266 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-12 13:08:38] 2025-10-12 17:05:27,266 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 13:08:38] 2025-10-12 17:05:27,266 | INFO     | will abort loop
[2025-10-12 13:08:38] 2025-10-12 17:05:27,319 | INFO     | all payload control threads have been joined
[2025-10-12 13:08:38] 2025-10-12 17:05:27,323 | INFO     | all job control threads have been joined
[2025-10-12 13:08:38] 2025-10-12 17:05:27,609 | INFO     | all data control threads have been joined
[2025-10-12 13:08:38] 2025-10-12 17:05:27,912 | INFO     | [job] retrieve thread has finished
[2025-10-12 13:08:38] 2025-10-12 17:05:27,976 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 13:08:38] 2025-10-12 17:05:28,013 | INFO     | [data] copytool_in thread has finished
[2025-10-12 13:08:38] 2025-10-12 17:05:28,066 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 13:08:38] 2025-10-12 17:05:28,242 | INFO     | [job] validate thread has finished
[2025-10-12 13:08:38] 2025-10-12 17:05:28,272 | INFO     | [job] job monitor thread has finished
[2025-10-12 13:08:38] 2025-10-12 17:05:28,325 | INFO     | [payload] control thread has finished
[2025-10-12 13:08:38] 2025-10-12 17:05:28,336 | INFO     | [job] control thread has finished
[2025-10-12 13:08:38] 2025-10-12 17:05:28,615 | INFO     | [data] control thread has finished
[2025-10-12 13:08:38] 2025-10-12 17:05:28,623 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 13:08:38] 2025-10-12 17:05:28,706 | INFO     | [payload] validate_post thread has finished
[2025-10-12 13:08:38] 2025-10-12 17:05:28,742 | INFO     | [payload] failed_post thread has finished
[2025-10-12 13:08:38] 2025-10-12 17:05:28,911 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 13:08:38] 2025-10-12 17:05:28,959 | INFO     | [data] copytool_out thread has finished
[2025-10-12 13:08:38] 2025-10-12 17:05:29,003 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 13:08:38] 2025-10-12 17:05:29,313 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 13:08:38] 2025-10-12 17:05:30,009 | INFO     | [job] queue monitor thread has finished
[2025-10-12 13:08:38] 2025-10-12 17:05:32,633 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 13:08:38] 2025-10-12 17:05:56,219 | INFO     | [monitor] cgroup control has ended
[2025-10-12 13:08:38] 2025-10-12 17:05:56,577 | INFO     | PID=665543 has CPU usage=5.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-12 13:08:38] 2025-10-12 17:05:56,578 | INFO     | .. there are 29 such processes running
[2025-10-12 13:08:38] 2025-10-12 17:05:56,580 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 13:08:38] 2025-10-12 17:05:56,580 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 13:08:38] 2025-10-12 17:05:56,581 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 13:08:38] 2025-10-12 17:05:57,483 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140560496068416)>', '<ExcThread(monitor, started 140559742117632)>']
[2025-10-12 13:08:38] 2025-10-12 17:05:57,586 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 13:08:38] 2025-10-12 17:05:57,587 | INFO     | [monitor] control thread has ended
[2025-10-12 13:08:38] 2025-10-12 17:05:58,102 [wrapper] supervise_pilot (15 min periods counter: 149)
[2025-10-12 13:08:38] 2025-10-12 17:06:02,509 | INFO     | all workflow threads have been joined
[2025-10-12 13:08:38] 2025-10-12 17:06:02,510 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 13:08:38] 2025-10-12 17:06:02,510 | INFO     | traces error code: 0
[2025-10-12 13:08:38] 2025-10-12 17:06:02,510 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 13:08:38] 2025-10-12 17:06:02,722 [wrapper] ==== pilot stdout END ====
[2025-10-12 13:08:38] 2025-10-12 17:06:02,745 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 13:08:38] 2025-10-12 17:06:02,769 [wrapper] pilotpid: 665543
[2025-10-12 13:08:38] 2025-10-12 17:06:02,791 [wrapper] Pilot exit status: 0
[2025-10-12 13:08:38] 2025-10-12 17:06:02,905 [wrapper] pandaids: 6837932138
[2025-10-12 13:08:38] 2025-10-12 17:06:03,165 [wrapper] cleanup supervisor_pilot 1608032 665544
[2025-10-12 13:08:38] 2025-10-12 17:06:03,175 [wrapper] Test setup, not cleaning
[2025-10-12 13:08:38] 2025-10-12 17:06:03,212 [wrapper] apfmon messages muted
[2025-10-12 13:08:38] 2025-10-12 17:06:03,216 [wrapper] ==== wrapper stdout END ====
[2025-10-12 13:08:38] 2025-10-12 17:06:03,219 [wrapper] ==== wrapper stderr END ====
[2025-10-12 13:08:38]  *** Error codes and diagnostics ***
[2025-10-12 13:08:38]     "exeErrorCode": 0,
[2025-10-12 13:08:38]     "exeErrorDiag": "",
[2025-10-12 13:08:38]     "pilotErrorCode": 0,
[2025-10-12 13:08:38]     "pilotErrorDiag": "",
[2025-10-12 13:08:38]  *** Listing of results directory ***
[2025-10-12 13:08:38] total 448984
[2025-10-12 13:08:38] -rw-r--r--. 1 boincer umatlas    557409 Oct 10 21:35 pilot3.tar.gz
[2025-10-12 13:08:38] -rwx------. 1 boincer umatlas     36292 Oct 10 21:52 runpilot2-wrapper.sh
[2025-10-12 13:08:38] -rw-r--r--. 1 boincer umatlas      5112 Oct 10 21:52 queuedata.json
[2025-10-12 13:08:38] -rw-r--r--. 1 boincer umatlas       100 Oct 11 00:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 13:08:38] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 11 00:03 run_atlas
[2025-10-12 13:08:38] -rw-r--r--. 1 boincer umatlas       105 Oct 11 00:03 job.xml
[2025-10-12 13:08:38] -rw-r--r--. 2 boincer umatlas 223050875 Oct 11 00:03 EVNT.46676267._001965.pool.root.1
[2025-10-12 13:08:38] -rw-r--r--. 2 boincer umatlas     15120 Oct 11 00:03 start_atlas.sh
[2025-10-12 13:08:38] drwxrwx--x. 2 boincer umatlas      4096 Oct 11 00:03 shared
[2025-10-12 13:08:38] -rw-r--r--. 2 boincer umatlas    569678 Oct 11 00:03 input.tar.gz
[2025-10-12 13:08:38] -rw-r--r--. 1 boincer umatlas         0 Oct 11 00:03 boinc_lockfile
[2025-10-12 13:08:38] -rw-r--r--. 1 boincer umatlas      2550 Oct 11 00:04 pandaJob.out
[2025-10-12 13:08:38] -rw-------. 1 boincer umatlas    975509 Oct 11 00:05 agis_schedconf.cvmfs.json
[2025-10-12 13:08:38] drwx------. 5 boincer umatlas      4096 Oct 11 00:05 pilot3
[2025-10-12 13:08:38] -rw-r--r--. 1 boincer umatlas      6524 Oct 12 13:01 init_data.xml
[2025-10-12 13:08:38] -rw-------. 1 boincer umatlas 196159419 Oct 12 13:04 HITS.46676269._048720.pool.root.1
[2025-10-12 13:08:38] -rw-r--r--. 1 boincer umatlas       530 Oct 12 13:04 boinc_task_state.xml
[2025-10-12 13:08:38] -rw-------. 1 boincer umatlas      1049 Oct 12 13:04 memory_monitor_summary.json
[2025-10-12 13:08:38] -rw-------. 1 boincer umatlas   1560580 Oct 12 13:05 agis_ddmendpoints.agis.ALL.json
[2025-10-12 13:08:38] -rw-------. 1 boincer umatlas   1993293 Oct 12 13:05 log.46676269._048720.job.log.tgz.1
[2025-10-12 13:08:38] -rw-------. 1 boincer umatlas      7833 Oct 12 13:05 heartbeat.json
[2025-10-12 13:08:38] -rw-------. 1 boincer umatlas        95 Oct 12 13:05 pilot_heartbeat.json
[2025-10-12 13:08:38] -rw-------. 1 boincer umatlas      5009 Oct 12 13:06 pilotlog.txt
[2025-10-12 13:08:38] -rw-------. 1 boincer umatlas  16330626 Oct 12 13:06 log.46676269._048720.job.log.1
[2025-10-12 13:08:38] -rw-------. 1 boincer umatlas       357 Oct 12 13:06 output.list
[2025-10-12 13:08:38] -rw-r--r--. 1 boincer umatlas       620 Oct 12 13:06 runtime_log
[2025-10-12 13:08:38] -rw-------. 1 boincer umatlas  18339840 Oct 12 13:06 result.tar.gz
[2025-10-12 13:08:38] -rw-r--r--. 1 boincer umatlas      8705 Oct 12 13:06 runtime_log.err
[2025-10-12 13:08:38] -rw-------. 1 boincer umatlas       661 Oct 12 13:06 2G3NDmYxdR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmL3eNDmuHtzbm.diag
[2025-10-12 13:08:38] -rw-r--r--. 1 boincer umatlas        27 Oct 12 13:08 wrapper_checkpoint.txt
[2025-10-12 13:08:38] -rw-r--r--. 1 boincer umatlas      8192 Oct 12 13:08 boinc_mmap_file
[2025-10-12 13:08:38] -rw-r--r--. 1 boincer umatlas     21090 Oct 12 13:08 stderr.txt
[2025-10-12 13:08:38] HITS file was successfully produced:
[2025-10-12 13:08:38] -rw-------. 1 boincer umatlas 196159419 Oct 12 13:04 shared/HITS.pool.root.1
[2025-10-12 13:08:38]  *** Contents of shared directory: ***
[2025-10-12 13:08:38] total 427884
[2025-10-12 13:08:38] -rw-r--r--. 2 boincer umatlas 223050875 Oct 11 00:03 ATLAS.root_0
[2025-10-12 13:08:38] -rw-r--r--. 2 boincer umatlas     15120 Oct 11 00:03 start_atlas.sh
[2025-10-12 13:08:38] -rw-r--r--. 2 boincer umatlas    569678 Oct 11 00:03 input.tar.gz
[2025-10-12 13:08:38] -rw-------. 1 boincer umatlas 196159419 Oct 12 13:04 HITS.pool.root.1
[2025-10-12 13:08:38] -rw-------. 1 boincer umatlas  18339840 Oct 12 13:06 result.tar.gz
13:08:40 (653040): run_atlas exited; CPU time 88054.668623
13:08:40 (653040): called boinc_finish(0)

</stderr_txt>
]]>

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