Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:01:42 (2968875): wrapper (7.7.26015): starting
00:01:42 (2968875): wrapper: running run_atlas (--nthreads 8)
[2025-10-11 00:01:42] Arguments: --nthreads 8
[2025-10-11 00:01:42] Threads: 8
[2025-10-11 00:01:42] Checking for CVMFS
[2025-10-11 00:01:44] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 00:01:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 00:01:44] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 00:01:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 00:01:47] 2.13.2.0 1140251 21001 262876 151571 0 337 38506333 40960000 19157 16776704 0 24720085 99.707 20807644 8716 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-11 00:01:47] CVMFS is ok
[2025-10-11 00:01:47] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 00:01:47] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 00:01:47] Further information can be found at the LHC@home message board.
[2025-10-11 00:01:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 00:01:47] Checking for apptainer binary...
[2025-10-11 00:01:47] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 00:01:47] Running /usr/bin/apptainer --version
[2025-10-11 00:01:47] apptainer version 1.4.3-1.el9
[2025-10-11 00:01:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 00:01:48] c7-10-13.aglt2.org
[2025-10-11 00:01:48] apptainer works
[2025-10-11 00:01:48] Set ATHENA_PROC_NUMBER=8
[2025-10-11 00:01:48] Set ATHENA_CORE_NUMBER=8
[2025-10-11 00:01:49] Starting ATLAS job with PandaID=6837873785
[2025-10-11 00:01:49] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-11 23:29:22]  *** The last 200 lines of the pilot log: ***
[2025-10-11 23:29:23] 2025-10-12 03:28:06,753 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 23:29:23] 2025-10-12 03:28:07,276 | INFO     | time since job start (84206s) is within the limit (172800.0s)
[2025-10-11 23:29:23] 2025-10-12 03:28:07,965 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-11 23:29:23] 2025-10-12 03:28:08,029 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 3292.443390625
[2025-10-11 23:29:23] 2025-10-12 03:28:08,139 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6837873785/memory_monitor_summary.json (trf name=prmon)
[2025-10-11 23:29:23] 2025-10-12 03:28:08,141 | INFO     | extracted standard info from prmon json
[2025-10-11 23:29:23] 2025-10-12 03:28:08,141 | INFO     | extracted standard memory fields from prmon json
[2025-10-11 23:29:23] 2025-10-12 03:28:08,141 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-11 23:29:23] 2025-10-12 03:28:08,150 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-11 23:29:23] 2025-10-12 03:28:08,150 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-11 23:29:23] 2025-10-12 03:28:08,301 | INFO     | fitting pss+swap vs Time
[2025-10-11 23:29:23] 2025-10-12 03:28:08,309 | INFO     | sum of square deviations: 800703520095.8059
[2025-10-11 23:29:23] 2025-10-12 03:28:08,851 | INFO     | sum of deviations: 2155252883287.597
[2025-10-11 23:29:23] 2025-10-12 03:28:08,852 | INFO     | mean x: 1760197704.1151605
[2025-10-11 23:29:23] 2025-10-12 03:28:08,901 | INFO     | mean y: 1991689.6734693877
[2025-10-11 23:29:23] 2025-10-12 03:28:08,901 | INFO     | -- intersect: -4735930751.951974
[2025-10-11 23:29:23] 2025-10-12 03:28:08,902 | INFO     | intersect: -4735930751.951974
[2025-10-11 23:29:23] 2025-10-12 03:28:09,060 | INFO     | chi2: 18.90714275854731
[2025-10-11 23:29:23] 2025-10-12 03:28:09,099 | INFO     | sum of square deviations: 791981631244.7021
[2025-10-11 23:29:23] 2025-10-12 03:28:09,393 | INFO     | time since job start (84208s) is within the limit (172800.0s)
[2025-10-11 23:29:23] 2025-10-12 03:28:09,416 | INFO     | monitor loop #2719: job 0:6837873785 is in state 'finished'
[2025-10-11 23:29:23] 2025-10-12 03:28:09,416 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 23:29:23] 2025-10-12 03:28:11,579 | INFO     | sum of deviations: 2490962588133.884
[2025-10-11 23:29:23] 2025-10-12 03:28:11,579 | INFO     | mean x: 1760197551.6298463
[2025-10-11 23:29:23] 2025-10-12 03:28:11,661 | INFO     | mean y: 1997558.9978054133
[2025-10-11 23:29:23] 2025-10-12 03:28:11,662 | INFO     | -- intersect: -5534224590.427378
[2025-10-11 23:29:23] 2025-10-12 03:28:11,662 | INFO     | intersect: -5534224590.427378
[2025-10-11 23:29:23] 2025-10-12 03:28:11,757 | INFO     | chi2: 15.608604476494087
[2025-10-11 23:29:23] 2025-10-12 03:28:11,757 | INFO     | current chi2=15.608604476494087 (change=17.44599024917215 %)
[2025-10-11 23:29:23] 2025-10-12 03:28:11,757 | INFO     | right removable region: 1366
[2025-10-11 23:29:23] 2025-10-12 03:28:11,843 | INFO     | sum of square deviations: 791978104092.1796
[2025-10-11 23:29:23] 2025-10-12 03:28:12,215 | INFO     | monitor loop #2720: job 0:6837873785 is in state 'finished'
[2025-10-11 23:29:23] 2025-10-12 03:28:12,216 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 23:29:23] 2025-10-12 03:28:13,783 | INFO     | sum of deviations: 1780299456333.4707
[2025-10-11 23:29:23] 2025-10-12 03:28:13,810 | INFO     | mean x: 1760197856.6313095
[2025-10-11 23:29:23] 2025-10-12 03:28:13,810 | INFO     | mean y: 1998242.5544989028
[2025-10-11 23:29:23] 2025-10-12 03:28:13,810 | INFO     | -- intersect: -3954776914.496216
[2025-10-11 23:29:23] 2025-10-12 03:28:13,811 | INFO     | intersect: -3954776914.496216
[2025-10-11 23:29:23] 2025-10-12 03:28:13,841 | INFO     | chi2: 14.678134734004653
[2025-10-11 23:29:23] 2025-10-12 03:28:13,873 | INFO     | current chi2=14.678134734004653 (change=22.36725071867804 %)
[2025-10-11 23:29:23] 2025-10-12 03:28:13,877 | INFO     | left removable region: 10
[2025-10-11 23:29:23] 2025-10-12 03:28:13,906 | INFO     | sum of square deviations: 773010039148.995
[2025-10-11 23:29:23] 2025-10-12 03:28:15,049 | INFO     | monitor loop #2721: job 0:6837873785 is in state 'finished'
[2025-10-11 23:29:23] 2025-10-12 03:28:15,049 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 23:29:23] 2025-10-12 03:28:16,136 | INFO     | sum of deviations: 1817085578976.7747
[2025-10-11 23:29:23] 2025-10-12 03:28:16,136 | INFO     | mean x: 1760197826.1651917
[2025-10-11 23:29:23] 2025-10-12 03:28:16,137 | INFO     | mean y: 2009255.219764012
[2025-10-11 23:29:23] 2025-10-12 03:28:16,137 | INFO     | -- intersect: -4135621466.3581624
[2025-10-11 23:29:23] 2025-10-12 03:28:16,137 | INFO     | intersect: -4135621466.3581624
[2025-10-11 23:29:23] 2025-10-12 03:28:16,235 | INFO     | chi2: 8.843418087331154
[2025-10-11 23:29:23] 2025-10-12 03:28:16,476 | INFO     | -- intersect: -4135621466.3581624
[2025-10-11 23:29:23] 2025-10-12 03:28:16,476 | INFO     | current memory leak: 2.35 B/s (using 1356 data points, chi2=8.84)
[2025-10-11 23:29:23] 2025-10-12 03:28:16,479 | INFO     | could have reported an average CPU frequency of 3291 MHz (47 samples)
[2025-10-11 23:29:23] 2025-10-12 03:28:16,503 | INFO     | ..............................
[2025-10-11 23:29:23] 2025-10-12 03:28:16,503 | INFO     | . Timing measurements:
[2025-10-11 23:29:23] 2025-10-12 03:28:16,503 | INFO     | . get job = 1 s
[2025-10-11 23:29:23] 2025-10-12 03:28:16,503 | INFO     | . initial setup = 9 s
[2025-10-11 23:29:23] 2025-10-12 03:28:16,504 | INFO     | . payload setup = 110 s
[2025-10-11 23:29:23] 2025-10-12 03:28:16,504 | INFO     | . stage-in = 3 s
[2025-10-11 23:29:23] 2025-10-12 03:28:16,504 | INFO     | . payload execution = 83762 s
[2025-10-11 23:29:23] 2025-10-12 03:28:16,504 | INFO     | . stage-out = 27 s
[2025-10-11 23:29:23] 2025-10-12 03:28:16,549 | INFO     | . log creation = 5 s
[2025-10-11 23:29:23] 2025-10-12 03:28:16,549 | INFO     | ..............................
[2025-10-11 23:29:23] 2025-10-12 03:28:20,716 | INFO     | 
[2025-10-11 23:29:23] 2025-10-12 03:28:20,716 | INFO     | job summary report
[2025-10-11 23:29:23] 2025-10-12 03:28:20,716 | INFO     | --------------------------------------------------
[2025-10-11 23:29:23] 2025-10-12 03:28:20,717 | INFO     | PanDA job id: 6837873785
[2025-10-11 23:29:23] 2025-10-12 03:28:20,717 | INFO     | task id: 46676269
[2025-10-11 23:29:23] 2025-10-12 03:28:20,717 | INFO     | errors: (none)
[2025-10-11 23:29:23] 2025-10-12 03:28:20,717 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-11 23:29:23] 2025-10-12 03:28:20,717 | INFO     | pilot state: finished 
[2025-10-11 23:29:23] 2025-10-12 03:28:20,717 | INFO     | transexitcode: 0
[2025-10-11 23:29:23] 2025-10-12 03:28:20,717 | INFO     | exeerrorcode: 0
[2025-10-11 23:29:23] 2025-10-12 03:28:20,718 | INFO     | exeerrordiag: 
[2025-10-11 23:29:23] 2025-10-12 03:28:20,718 | INFO     | exitcode: 0
[2025-10-11 23:29:23] 2025-10-12 03:28:20,718 | INFO     | exitmsg: OK
[2025-10-11 23:29:23] 2025-10-12 03:28:20,718 | INFO     | cpuconsumptiontime: 106286 s
[2025-10-11 23:29:23] 2025-10-12 03:28:20,718 | INFO     | nevents: 400
[2025-10-11 23:29:23] 2025-10-12 03:28:20,718 | INFO     | neventsw: 0
[2025-10-11 23:29:23] 2025-10-12 03:28:20,719 | INFO     | pid: 3026980
[2025-10-11 23:29:23] 2025-10-12 03:28:20,719 | INFO     | pgrp: 3026980
[2025-10-11 23:29:23] 2025-10-12 03:28:20,719 | INFO     | corecount: 8
[2025-10-11 23:29:23] 2025-10-12 03:28:20,719 | INFO     | event service: False
[2025-10-11 23:29:23] 2025-10-12 03:28:20,719 | INFO     | sizes: {0: 2348023, 1: 2348624, 2: 2348708, 4: 2348736, 6: 2348764, 7: 2349091, 10: 2349119, 25: 2349147, 37: 2349175, 50: 2349203, 63: 2349231, 74: 2349539, 86: 2
[2025-10-11 23:29:23] 2025-10-12 03:28:20,719 | INFO     | --------------------------------------------------
[2025-10-11 23:29:23] 2025-10-12 03:28:20,720 | INFO     | 
[2025-10-11 23:29:23] 2025-10-12 03:28:20,869 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-10-11 23:29:23] 2025-10-12 03:28:21,452 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-11 23:29:23] 2025-10-12 03:28:21,453 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-11 23:29:23] 2025-10-12 03:28:21,453 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-11 23:29:23] 2025-10-12 03:28:21,453 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-11 23:29:23] 2025-10-12 03:28:21,453 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-11 23:29:23] 2025-10-12 03:28:21,454 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-11 23:29:23] 2025-10-12 03:28:21,454 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-11 23:29:23] 2025-10-12 03:28:21,454 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-11 23:29:23] 2025-10-12 03:28:21,454 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-11 23:29:23] 2025-10-12 03:28:21,454 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-11 23:29:23] 2025-10-12 03:28:21,454 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-11 23:29:23] 2025-10-12 03:28:21,455 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-11 23:29:23] 2025-10-12 03:28:21,455 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-11 23:29:23] 2025-10-12 03:28:21,455 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-11 23:29:23] 2025-10-12 03:28:21,455 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-11 23:29:23] 2025-10-12 03:28:21,455 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-11 23:29:23] 2025-10-12 03:28:21,455 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-11 23:29:23] 2025-10-12 03:28:21,456 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-11 23:29:23] 2025-10-12 03:28:21,473 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-11 23:29:23] 2025-10-12 03:28:21,473 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-11 23:29:23] 2025-10-12 03:28:21,474 | INFO     | job 6837873785 has completed (purged errors)
[2025-10-11 23:29:23] 2025-10-12 03:28:21,474 | INFO     | overall cleanup function is called
[2025-10-11 23:29:23] 2025-10-12 03:28:22,583 | INFO     | --- collectZombieJob: --- 10, [3026980]
[2025-10-11 23:29:23] 2025-10-12 03:28:22,583 | INFO     | zombie collector waiting for pid 3026980
[2025-10-11 23:29:23] 2025-10-12 03:28:22,583 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-11 23:29:23] 2025-10-12 03:28:22,583 | INFO     | collected zombie processes
[2025-10-11 23:29:23] 2025-10-12 03:28:22,584 | INFO     | will attempt to kill all subprocesses of pid=3026980
[2025-10-11 23:29:23] 2025-10-12 03:28:30,540 | INFO     | PID=2984825 has CPU usage=6.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-11 23:29:23] 2025-10-12 03:28:30,540 | INFO     | .. there are 26 such processes running
[2025-10-11 23:29:23] 2025-10-12 03:28:34,113 | INFO     | process IDs to be killed: [3026980] (in reverse order)
[2025-10-11 23:29:23] 2025-10-12 03:28:35,997 | WARNING  | found no corresponding commands to process id(s)
[2025-10-11 23:29:23] 2025-10-12 03:28:35,998 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-11 23:29:23] 2025-10-12 03:28:36,094 | INFO     | did not find any defunct processes belonging to 3026980
[2025-10-11 23:29:23] 2025-10-12 03:28:36,502 | INFO     | did not find any defunct processes belonging to 3026980
[2025-10-11 23:29:23] 2025-10-12 03:28:36,503 | INFO     | ready for new job
[2025-10-11 23:29:23] 2025-10-12 03:28:36,503 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-11 23:29:23] 2025-10-12 03:28:36,654 | INFO     | ***************************************
[2025-10-11 23:29:23] 2025-10-12 03:28:36,654 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-11 23:29:23] 2025-10-12 03:28:36,655 | INFO     | ***************************************
[2025-10-11 23:29:23] 2025-10-12 03:28:36,655 | INFO     | 
[2025-10-11 23:29:23] 2025-10-12 03:28:36,688 | INFO     | architecture information:
[2025-10-11 23:29:23] 2025-10-12 03:28:36,697 | INFO     | executing command: cat /etc/os-release
[2025-10-11 23:29:23] 2025-10-12 03:28:36,988 | INFO     | cat /etc/os-release:
[2025-10-11 23:29:23] NAME="CentOS Linux"
[2025-10-11 23:29:23] VERSION="7 (Core)"
[2025-10-11 23:29:23] ID="centos"
[2025-10-11 23:29:23] ID_LIKE="rhel fedora"
[2025-10-11 23:29:23] VERSION_ID="7"
[2025-10-11 23:29:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-11 23:29:23] ANSI_COLOR="0;31"
[2025-10-11 23:29:23] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-11 23:29:23] HOME_URL="https://www.centos.org/"
[2025-10-11 23:29:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-11 23:29:23] 
[2025-10-11 23:29:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-11 23:29:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-11 23:29:23] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-11 23:29:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-11 23:29:23] 
[2025-10-11 23:29:23] 2025-10-12 03:28:36,989 | INFO     | ***************************************
[2025-10-11 23:29:23] 2025-10-12 03:28:37,494 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-10-11 23:29:23] 2025-10-12 03:28:38,050 | INFO     | sufficient remaining disk space (84081115136 B)
[2025-10-11 23:29:23] 2025-10-12 03:28:38,050 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-11 23:29:23] 2025-10-12 03:28:38,051 | INFO     | current server update state: UPDATING_FINAL
[2025-10-11 23:29:23] 2025-10-12 03:28:38,051 | INFO     | update_server=False
[2025-10-11 23:29:23] 2025-10-12 03:28:38,051 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-11 23:29:23] 2025-10-12 03:28:38,133 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-11 23:29:23] 2025-10-12 03:28:38,133 | INFO     | aborting loop
[2025-10-11 23:29:23] 2025-10-12 03:28:38,399 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-11 23:29:23] 2025-10-12 03:28:38,504 | INFO     | all data control threads have been joined
[2025-10-11 23:29:23] 2025-10-12 03:28:38,716 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-11 23:29:23] 2025-10-12 03:28:38,905 | INFO     | all payload control threads have been joined
[2025-10-11 23:29:23] 2025-10-12 03:28:39,057 | INFO     | [job] retrieve thread has finished
[2025-10-11 23:29:23] 2025-10-12 03:28:39,079 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-11 23:29:23] 2025-10-12 03:28:39,134 | INFO     | [payload] failed_post thread has finished
[2025-10-11 23:29:23] 2025-10-12 03:28:39,141 | INFO     | [job] job monitor thread has finished
[2025-10-11 23:29:23] 2025-10-12 03:28:39,333 | INFO     | [payload] validate_pre thread has finished
[2025-10-11 23:29:23] 2025-10-12 03:28:39,359 | INFO     | [job] create_data_payload thread has finished
[2025-10-11 23:29:23] 2025-10-12 03:28:39,360 | INFO     | [payload] execute_payloads thread has finished
[2025-10-11 23:29:23] 2025-10-12 03:28:39,361 | INFO     | [job] validate thread has finished
[2025-10-11 23:29:23] 2025-10-12 03:28:39,361 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-11 23:29:23] 2025-10-12 03:28:39,362 | INFO     | [data] copytool_in thread has finished
[2025-10-11 23:29:23] 2025-10-12 03:28:39,416 | INFO     | [job] queue monitor thread has finished
[2025-10-11 23:29:23] 2025-10-12 03:28:39,465 | INFO     | all job control threads have been joined
[2025-10-11 23:29:23] 2025-10-12 03:28:39,510 | INFO     | [data] control thread has finished
[2025-10-11 23:29:23] 2025-10-12 03:28:39,936 | INFO     | [payload] control thread has finished
[2025-10-11 23:29:23] 2025-10-12 03:28:39,972 | INFO     | [payload] validate_post thread has finished
[2025-10-11 23:29:23] 2025-10-12 03:28:40,471 | INFO     | [job] control thread has finished
[2025-10-11 23:29:23] 2025-10-12 03:28:40,548 | INFO     | [monitor] cgroup control has ended
[2025-10-11 23:29:23] 2025-10-12 03:28:40,774 | INFO     | [data] copytool_out thread has finished
[2025-10-11 23:29:23] 2025-10-12 03:28:43,135 | INFO     | [data] queue_monitor thread has finished
[2025-10-11 23:29:23] 2025-10-12 03:28:44,611 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140279756879680)>', '<ExcThread(monitor, started 140279485011712)>']
[2025-10-11 23:29:23] 2025-10-12 03:28:49,637 | INFO     | all workflow threads have been joined
[2025-10-11 23:29:23] 2025-10-12 03:28:49,637 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-11 23:29:23] 2025-10-12 03:28:49,638 | INFO     | traces error code: 0
[2025-10-11 23:29:23] 2025-10-12 03:28:49,638 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-11 23:29:23] 2025-10-12 03:29:15,047 | INFO     | PID=2984825 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-11 23:29:23] 2025-10-12 03:29:15,047 | INFO     | .. there are 26 such processes running
[2025-10-11 23:29:23] 2025-10-12 03:29:15,049 | INFO     | found 0 job(s) in 20 queues
[2025-10-11 23:29:23] 2025-10-12 03:29:15,049 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-11 23:29:23] 2025-10-12 03:29:15,049 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-11 23:29:23] 2025-10-12 03:29:15,049 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-11 23:29:23] 2025-10-12 03:29:15,050 | INFO     | [monitor] control thread has ended
[2025-10-11 23:29:23] 2025-10-12 03:29:16,803 [wrapper] ==== pilot stdout END ====
[2025-10-11 23:29:23] 2025-10-12 03:29:16,832 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-11 23:29:23] 2025-10-12 03:29:16,874 [wrapper] pilotpid: 2984825
[2025-10-11 23:29:23] 2025-10-12 03:29:16,942 [wrapper] Pilot exit status: 0
[2025-10-11 23:29:23] 2025-10-12 03:29:17,326 [wrapper] pandaids: 6837873785
[2025-10-11 23:29:23] 2025-10-12 03:29:19,949 [wrapper] cleanup supervisor_pilot 1746128 2984826
[2025-10-11 23:29:23] 2025-10-12 03:29:20,003 [wrapper] Test setup, not cleaning
[2025-10-11 23:29:23] 2025-10-12 03:29:20,103 [wrapper] apfmon messages muted
[2025-10-11 23:29:23] 2025-10-12 03:29:20,189 [wrapper] ==== wrapper stdout END ====
[2025-10-11 23:29:23] 2025-10-12 03:29:20,226 [wrapper] ==== wrapper stderr END ====
[2025-10-11 23:29:23]  *** Error codes and diagnostics ***
[2025-10-11 23:29:23]     "exeErrorCode": 0,
[2025-10-11 23:29:23]     "exeErrorDiag": "",
[2025-10-11 23:29:23]     "pilotErrorCode": 0,
[2025-10-11 23:29:23]     "pilotErrorDiag": "",
[2025-10-11 23:29:23]  *** Listing of results directory ***
[2025-10-11 23:29:23] total 427688
[2025-10-11 23:29:23] -rw-r--r--. 1 boincer umatlas    563267 Oct  7 03:02 pilot3.tar.gz
[2025-10-11 23:29:23] -rw-r--r--. 1 boincer umatlas      5112 Oct 10 19:02 queuedata.json
[2025-10-11 23:29:23] -rwx------. 1 boincer umatlas     36292 Oct 10 19:03 runpilot2-wrapper.sh
[2025-10-11 23:29:23] -rw-r--r--. 1 boincer umatlas       100 Oct 11 00:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-11 23:29:23] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 11 00:01 run_atlas
[2025-10-11 23:29:23] -rw-r--r--. 1 boincer umatlas       105 Oct 11 00:01 job.xml
[2025-10-11 23:29:23] -rw-r--r--. 2 boincer umatlas 220911259 Oct 11 00:01 EVNT.46676267._001884.pool.root.1
[2025-10-11 23:29:23] -rw-r--r--. 2 boincer umatlas     15120 Oct 11 00:01 start_atlas.sh
[2025-10-11 23:29:23] drwxrwx--x. 2 boincer umatlas      4096 Oct 11 00:01 shared
[2025-10-11 23:29:23] -rw-r--r--. 2 boincer umatlas    576710 Oct 11 00:01 input.tar.gz
[2025-10-11 23:29:23] -rw-r--r--. 1 boincer umatlas         0 Oct 11 00:01 boinc_lockfile
[2025-10-11 23:29:23] -rw-r--r--. 1 boincer umatlas      2547 Oct 11 00:01 pandaJob.out
[2025-10-11 23:29:23] -rw-------. 1 boincer umatlas    975509 Oct 11 00:04 agis_schedconf.cvmfs.json
[2025-10-11 23:29:23] drwx------. 4 boincer umatlas      4096 Oct 11 00:04 pilot3
[2025-10-11 23:29:23] -rw-------. 1 boincer umatlas 197043331 Oct 11 23:20 HITS.46676269._046637.pool.root.1
[2025-10-11 23:29:23] -rw-r--r--. 1 boincer umatlas       532 Oct 11 23:20 boinc_task_state.xml
[2025-10-11 23:29:23] -rw-------. 1 boincer umatlas      1033 Oct 11 23:26 memory_monitor_summary.json
[2025-10-11 23:29:23] -rw-------. 1 boincer umatlas   1560580 Oct 11 23:26 agis_ddmendpoints.agis.ALL.json
[2025-10-11 23:29:23] -rw-------. 1 boincer umatlas   1075052 Oct 11 23:26 log.46676269._046637.job.log.tgz.1
[2025-10-11 23:29:23] -rw-r--r--. 1 boincer umatlas      6898 Oct 11 23:27 init_data.xml
[2025-10-11 23:29:23] -rw-------. 1 boincer umatlas      7788 Oct 11 23:28 heartbeat.json
[2025-10-11 23:29:23] -rw-------. 1 boincer umatlas        95 Oct 11 23:29 pilot_heartbeat.json
[2025-10-11 23:29:23] -rw-------. 1 boincer umatlas       823 Oct 11 23:29 pilotlog.txt
[2025-10-11 23:29:23] -rw-------. 1 boincer umatlas   6967692 Oct 11 23:29 log.46676269._046637.job.log.1
[2025-10-11 23:29:23] -rw-------. 1 boincer umatlas       357 Oct 11 23:29 output.list
[2025-10-11 23:29:23] -rw-r--r--. 1 boincer umatlas        29 Oct 11 23:29 wrapper_checkpoint.txt
[2025-10-11 23:29:23] -rw-r--r--. 1 boincer umatlas       620 Oct 11 23:29 runtime_log
[2025-10-11 23:29:23] -rw-------. 1 boincer umatlas   8058880 Oct 11 23:29 result.tar.gz
[2025-10-11 23:29:23] -rw-r--r--. 1 boincer umatlas      8704 Oct 11 23:29 runtime_log.err
[2025-10-11 23:29:23] -rw-------. 1 boincer umatlas       661 Oct 11 23:29 laPNDmXKbR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmJeeNDmCwwNun.diag
[2025-10-11 23:29:23] -rw-r--r--. 1 boincer umatlas      8192 Oct 11 23:29 boinc_mmap_file
[2025-10-11 23:29:23] -rw-r--r--. 1 boincer umatlas     21594 Oct 11 23:29 stderr.txt
[2025-10-11 23:29:44] HITS file was successfully produced:
[2025-10-11 23:29:44] -rw-------. 1 boincer umatlas 197043331 Oct 11 23:20 shared/HITS.pool.root.1
[2025-10-11 23:29:44]  *** Contents of shared directory: ***
[2025-10-11 23:29:44] total 416624
[2025-10-11 23:29:44] -rw-r--r--. 2 boincer umatlas 220911259 Oct 11 00:01 ATLAS.root_0
[2025-10-11 23:29:44] -rw-r--r--. 2 boincer umatlas     15120 Oct 11 00:01 start_atlas.sh
[2025-10-11 23:29:44] -rw-r--r--. 2 boincer umatlas    576710 Oct 11 00:01 input.tar.gz
[2025-10-11 23:29:44] -rw-------. 1 boincer umatlas 197043331 Oct 11 23:20 HITS.pool.root.1
[2025-10-11 23:29:44] -rw-------. 1 boincer umatlas   8058880 Oct 11 23:29 result.tar.gz
23:29:46 (2968875): run_atlas exited; CPU time 108931.380468
23:29:46 (2968875): called boinc_finish(0)

</stderr_txt>
]]>

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