Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:01:30 (3982398): wrapper (7.7.26015): starting
00:01:30 (3982398): wrapper: running run_atlas (--nthreads 9)
[2025-10-11 00:01:30] Arguments: --nthreads 9
[2025-10-11 00:01:30] Threads: 9
[2025-10-11 00:01:30] Checking for CVMFS
[2025-10-11 00:01:31] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 00:01:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 00:01:32] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 00:01:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 00:01:34] 2.13.2.0 116703 136164 285884 151571 0 32 20330282 32935936 27968 16776704 0 86493194 99.668 81309160 30443 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-11 00:01:34] CVMFS is ok
[2025-10-11 00:01:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 00:01:34] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 00:01:34] Further information can be found at the LHC@home message board.
[2025-10-11 00:01:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 00:01:34] Checking for apptainer binary...
[2025-10-11 00:01:34] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 00:01:34] Running /usr/bin/apptainer --version
[2025-10-11 00:01:35] apptainer version 1.4.3-1.el9
[2025-10-11 00:01:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 00:01:35] c-5-3.aglt2.org
[2025-10-11 00:01:35] apptainer works
[2025-10-11 00:01:35] Set ATHENA_PROC_NUMBER=9
[2025-10-11 00:01:35] Set ATHENA_CORE_NUMBER=9
[2025-10-11 00:01:36] Starting ATLAS job with PandaID=6837873738
[2025-10-11 00:01:36] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-11 12:57:52]  *** The last 200 lines of the pilot log: ***
[2025-10-11 12:57:52] 2025-10-11 16:57:17,376 | INFO     | current chi2=5.472655792401869 (change=39.9385372630314 %)
[2025-10-11 12:57:52] 2025-10-11 16:57:17,377 | INFO     | sum of square deviations: 129765355091.87567
[2025-10-11 12:57:52] 2025-10-11 16:57:17,393 | INFO     | sum of deviations: 200516484855.86346
[2025-10-11 12:57:52] 2025-10-11 16:57:17,393 | INFO     | mean x: 1760179026.0975935
[2025-10-11 12:57:52] 2025-10-11 16:57:17,394 | INFO     | mean y: 2124687.590909091
[2025-10-11 12:57:52] 2025-10-11 16:57:17,394 | INFO     | -- intersect: -2717745425.5083594
[2025-10-11 12:57:52] 2025-10-11 16:57:17,394 | INFO     | intersect: -2717745425.5083594
[2025-10-11 12:57:52] 2025-10-11 16:57:17,395 | INFO     | chi2: 3.9579466470606173
[2025-10-11 12:57:52] 2025-10-11 16:57:17,395 | INFO     | current chi2=3.9579466470606173 (change=27.67777113708202 %)
[2025-10-11 12:57:52] 2025-10-11 16:57:17,396 | INFO     | sum of square deviations: 127180412013.06041
[2025-10-11 12:57:52] 2025-10-11 16:57:17,412 | INFO     | sum of deviations: 90584281702.8184
[2025-10-11 12:57:52] 2025-10-11 16:57:17,412 | INFO     | mean x: 1760179178.5948856
[2025-10-11 12:57:52] 2025-10-11 16:57:17,412 | INFO     | mean y: 2131173.2153432034
[2025-10-11 12:57:52] 2025-10-11 16:57:17,413 | INFO     | -- intersect: -1251556906.8712423
[2025-10-11 12:57:52] 2025-10-11 16:57:17,413 | INFO     | intersect: -1251556906.8712423
[2025-10-11 12:57:52] 2025-10-11 16:57:17,414 | INFO     | chi2: 2.911835914166016
[2025-10-11 12:57:52] 2025-10-11 16:57:17,414 | INFO     | current chi2=2.911835914166016 (change=26.430642607865845 %)
[2025-10-11 12:57:52] 2025-10-11 16:57:17,415 | INFO     | sum of square deviations: 124629982766.54918
[2025-10-11 12:57:52] 2025-10-11 16:57:17,430 | INFO     | sum of deviations: -15021000890.402489
[2025-10-11 12:57:52] 2025-10-11 16:57:17,430 | INFO     | mean x: 1760179331.0934958
[2025-10-11 12:57:52] 2025-10-11 16:57:17,430 | INFO     | mean y: 2137487.0203252034
[2025-10-11 12:57:52] 2025-10-11 16:57:17,430 | INFO     | -- intersect: 214282708.52090853
[2025-10-11 12:57:52] 2025-10-11 16:57:17,431 | INFO     | intersect: 214282708.52090853
[2025-10-11 12:57:52] 2025-10-11 16:57:17,432 | INFO     | chi2: 1.937278990207739
[2025-10-11 12:57:52] 2025-10-11 16:57:17,432 | INFO     | current chi2=1.937278990207739 (change=33.46881323968427 %)
[2025-10-11 12:57:52] 2025-10-11 16:57:17,433 | INFO     | sum of square deviations: 122113834236.849
[2025-10-11 12:57:52] 2025-10-11 16:57:17,446 | INFO     | sum of deviations: -98524213587.24966
[2025-10-11 12:57:52] 2025-10-11 16:57:17,447 | INFO     | mean x: 1760179483.5934515
[2025-10-11 12:57:52] 2025-10-11 16:57:17,447 | INFO     | mean y: 2142543.572987722
[2025-10-11 12:57:52] 2025-10-11 16:57:17,447 | INFO     | -- intersect: 1422295309.0417573
[2025-10-11 12:57:52] 2025-10-11 16:57:17,447 | INFO     | intersect: 1422295309.0417573
[2025-10-11 12:57:52] 2025-10-11 16:57:17,448 | INFO     | chi2: 1.2787998779888863
[2025-10-11 12:57:52] 2025-10-11 16:57:17,448 | INFO     | current chi2=1.2787998779888863 (change=33.98989590798393 %)
[2025-10-11 12:57:52] 2025-10-11 16:57:17,449 | INFO     | sum of square deviations: 119631824448.83379
[2025-10-11 12:57:52] 2025-10-11 16:57:17,464 | INFO     | sum of deviations: -130525379022.38463
[2025-10-11 12:57:52] 2025-10-11 16:57:17,465 | INFO     | mean x: 1760179636.092033
[2025-10-11 12:57:52] 2025-10-11 16:57:17,465 | INFO     | mean y: 2144506.6923076925
[2025-10-11 12:57:52] 2025-10-11 16:57:17,465 | INFO     | -- intersect: 1922604344.2554998
[2025-10-11 12:57:52] 2025-10-11 16:57:17,465 | INFO     | intersect: 1922604344.2554998
[2025-10-11 12:57:52] 2025-10-11 16:57:17,466 | INFO     | chi2: 1.154123282514069
[2025-10-11 12:57:52] 2025-10-11 16:57:17,466 | INFO     | current chi2=1.154123282514069 (change=9.749500107154434 %)
[2025-10-11 12:57:52] 2025-10-11 16:57:17,466 | INFO     | left removable region: 60
[2025-10-11 12:57:52] 2025-10-11 16:57:17,467 | INFO     | sum of square deviations: 102747109264.94025
[2025-10-11 12:57:52] 2025-10-11 16:57:17,482 | INFO     | sum of deviations: -82567953570.01294
[2025-10-11 12:57:52] 2025-10-11 16:57:17,482 | INFO     | mean x: 1760180368.0765896
[2025-10-11 12:57:52] 2025-10-11 16:57:17,482 | INFO     | mean y: 2147193.9436416184
[2025-10-11 12:57:52] 2025-10-11 16:57:17,482 | INFO     | -- intersect: 1416634588.731961
[2025-10-11 12:57:52] 2025-10-11 16:57:17,482 | INFO     | intersect: 1416634588.731961
[2025-10-11 12:57:52] 2025-10-11 16:57:17,483 | INFO     | chi2: 0.3685312146383161
[2025-10-11 12:57:52] 2025-10-11 16:57:17,484 | INFO     | -- intersect: 1416634588.731961
[2025-10-11 12:57:52] 2025-10-11 16:57:17,484 | INFO     | current memory leak: -0.80 B/s (using 692 data points, chi2=0.37)
[2025-10-11 12:57:52] 2025-10-11 16:57:17,485 | INFO     | could have reported an average CPU frequency of 2599 MHz (29 samples)
[2025-10-11 12:57:52] 2025-10-11 16:57:17,485 | INFO     | ..............................
[2025-10-11 12:57:52] 2025-10-11 16:57:17,486 | INFO     | . Timing measurements:
[2025-10-11 12:57:52] 2025-10-11 16:57:17,486 | INFO     | . get job = 1 s
[2025-10-11 12:57:52] 2025-10-11 16:57:17,486 | INFO     | . initial setup = 5 s
[2025-10-11 12:57:52] 2025-10-11 16:57:17,486 | INFO     | . payload setup = 70 s
[2025-10-11 12:57:52] 2025-10-11 16:57:17,486 | INFO     | . stage-in = 1 s
[2025-10-11 12:57:52] 2025-10-11 16:57:17,486 | INFO     | . payload execution = 46236 s
[2025-10-11 12:57:52] 2025-10-11 16:57:17,486 | INFO     | . stage-out = 4 s
[2025-10-11 12:57:52] 2025-10-11 16:57:17,486 | INFO     | . log creation = 0 s
[2025-10-11 12:57:52] 2025-10-11 16:57:17,486 | INFO     | ..............................
[2025-10-11 12:57:52] 2025-10-11 16:57:17,601 | INFO     | 
[2025-10-11 12:57:52] 2025-10-11 16:57:17,601 | INFO     | job summary report
[2025-10-11 12:57:52] 2025-10-11 16:57:17,601 | INFO     | --------------------------------------------------
[2025-10-11 12:57:52] 2025-10-11 16:57:17,601 | INFO     | PanDA job id: 6837873738
[2025-10-11 12:57:52] 2025-10-11 16:57:17,601 | INFO     | task id: 46676269
[2025-10-11 12:57:52] 2025-10-11 16:57:17,601 | INFO     | errors: (none)
[2025-10-11 12:57:52] 2025-10-11 16:57:17,602 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-11 12:57:52] 2025-10-11 16:57:17,602 | INFO     | pilot state: finished 
[2025-10-11 12:57:52] 2025-10-11 16:57:17,602 | INFO     | transexitcode: 0
[2025-10-11 12:57:52] 2025-10-11 16:57:17,603 | INFO     | exeerrorcode: 0
[2025-10-11 12:57:52] 2025-10-11 16:57:17,603 | INFO     | exeerrordiag: 
[2025-10-11 12:57:52] 2025-10-11 16:57:17,603 | INFO     | exitcode: 0
[2025-10-11 12:57:52] 2025-10-11 16:57:17,603 | INFO     | exitmsg: OK
[2025-10-11 12:57:52] 2025-10-11 16:57:17,603 | INFO     | cpuconsumptiontime: 54010 s
[2025-10-11 12:57:52] 2025-10-11 16:57:17,603 | INFO     | nevents: 400
[2025-10-11 12:57:52] 2025-10-11 16:57:17,603 | INFO     | neventsw: 0
[2025-10-11 12:57:52] 2025-10-11 16:57:17,603 | INFO     | pid: 4010334
[2025-10-11 12:57:52] 2025-10-11 16:57:17,603 | INFO     | pgrp: 4010334
[2025-10-11 12:57:52] 2025-10-11 16:57:17,603 | INFO     | corecount: 9
[2025-10-11 12:57:52] 2025-10-11 16:57:17,604 | INFO     | event service: False
[2025-10-11 12:57:52] 2025-10-11 16:57:17,604 | INFO     | sizes: {0: 2348029, 1: 2348630, 2: 2348714, 3: 2348742, 4: 2348770, 5: 2348969, 6: 2349153, 18: 2349181, 30: 2349209, 41: 2349237, 53: 2349265, 60: 2349835, 64: 23
[2025-10-11 12:57:52] 2025-10-11 16:57:17,604 | INFO     | --------------------------------------------------
[2025-10-11 12:57:52] 2025-10-11 16:57:17,604 | INFO     | 
[2025-10-11 12:57:52] 2025-10-11 16:57:17,604 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-10-11 12:57:52] 2025-10-11 16:57:17,631 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-11 12:57:52] 2025-10-11 16:57:17,632 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-11 12:57:52] 2025-10-11 16:57:17,632 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-11 12:57:52] 2025-10-11 16:57:17,632 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-11 12:57:52] 2025-10-11 16:57:17,632 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-11 12:57:52] 2025-10-11 16:57:17,632 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-11 12:57:52] 2025-10-11 16:57:17,632 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-11 12:57:52] 2025-10-11 16:57:17,633 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-11 12:57:52] 2025-10-11 16:57:17,633 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-11 12:57:52] 2025-10-11 16:57:17,633 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-11 12:57:52] 2025-10-11 16:57:17,633 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-11 12:57:52] 2025-10-11 16:57:17,633 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-11 12:57:52] 2025-10-11 16:57:17,633 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-11 12:57:52] 2025-10-11 16:57:17,633 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-11 12:57:52] 2025-10-11 16:57:17,633 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-11 12:57:52] 2025-10-11 16:57:17,633 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-11 12:57:52] 2025-10-11 16:57:17,634 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-11 12:57:52] 2025-10-11 16:57:17,634 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-11 12:57:52] 2025-10-11 16:57:17,634 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-11 12:57:52] 2025-10-11 16:57:17,634 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-11 12:57:52] 2025-10-11 16:57:17,634 | INFO     | job 6837873738 has completed (purged errors)
[2025-10-11 12:57:52] 2025-10-11 16:57:17,634 | INFO     | overall cleanup function is called
[2025-10-11 12:57:52] 2025-10-11 16:57:18,321 | INFO     | PID=3990517 has CPU usage=10.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-10-11 12:57:52] 2025-10-11 16:57:18,321 | INFO     | .. there are 40 such processes running
[2025-10-11 12:57:52] 2025-10-11 16:57:18,646 | INFO     | --- collectZombieJob: --- 10, [4010334]
[2025-10-11 12:57:52] 2025-10-11 16:57:18,646 | INFO     | zombie collector waiting for pid 4010334
[2025-10-11 12:57:52] 2025-10-11 16:57:18,646 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-11 12:57:52] 2025-10-11 16:57:18,646 | INFO     | collected zombie processes
[2025-10-11 12:57:52] 2025-10-11 16:57:18,647 | INFO     | will attempt to kill all subprocesses of pid=4010334
[2025-10-11 12:57:52] 2025-10-11 16:57:19,182 | INFO     | process IDs to be killed: [4010334] (in reverse order)
[2025-10-11 12:57:52] 2025-10-11 16:57:19,310 | WARNING  | found no corresponding commands to process id(s)
[2025-10-11 12:57:52] 2025-10-11 16:57:19,311 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-11 12:57:52] 2025-10-11 16:57:19,326 | INFO     | did not find any defunct processes belonging to 4010334
[2025-10-11 12:57:52] 2025-10-11 16:57:19,340 | INFO     | did not find any defunct processes belonging to 4010334
[2025-10-11 12:57:52] 2025-10-11 16:57:19,341 | INFO     | ready for new job
[2025-10-11 12:57:52] 2025-10-11 16:57:19,341 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-11 12:57:52] 2025-10-11 16:57:19,345 | INFO     | ***************************************
[2025-10-11 12:57:52] 2025-10-11 16:57:19,345 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-11 12:57:52] 2025-10-11 16:57:19,345 | INFO     | ***************************************
[2025-10-11 12:57:52] 2025-10-11 16:57:19,345 | INFO     | 
[2025-10-11 12:57:52] 2025-10-11 16:57:19,348 | INFO     | architecture information:
[2025-10-11 12:57:52] 2025-10-11 16:57:19,348 | INFO     | executing command: cat /etc/os-release
[2025-10-11 12:57:52] 2025-10-11 16:57:19,364 | INFO     | cat /etc/os-release:
[2025-10-11 12:57:52] NAME="CentOS Linux"
[2025-10-11 12:57:52] VERSION="7 (Core)"
[2025-10-11 12:57:52] ID="centos"
[2025-10-11 12:57:52] ID_LIKE="rhel fedora"
[2025-10-11 12:57:52] VERSION_ID="7"
[2025-10-11 12:57:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-11 12:57:52] ANSI_COLOR="0;31"
[2025-10-11 12:57:52] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-11 12:57:52] HOME_URL="https://www.centos.org/"
[2025-10-11 12:57:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-11 12:57:52] 
[2025-10-11 12:57:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-11 12:57:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-11 12:57:52] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-11 12:57:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-11 12:57:52] 
[2025-10-11 12:57:52] 2025-10-11 16:57:19,365 | INFO     | ***************************************
[2025-10-11 12:57:52] 2025-10-11 16:57:19,867 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-10-11 12:57:52] 2025-10-11 16:57:19,927 | INFO     | sufficient remaining disk space (75656855552 B)
[2025-10-11 12:57:52] 2025-10-11 16:57:19,927 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-11 12:57:52] 2025-10-11 16:57:19,928 | INFO     | current server update state: UPDATING_FINAL
[2025-10-11 12:57:52] 2025-10-11 16:57:19,928 | INFO     | update_server=False
[2025-10-11 12:57:52] 2025-10-11 16:57:19,928 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-11 12:57:52] 2025-10-11 16:57:19,929 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-11 12:57:52] 2025-10-11 16:57:20,030 | INFO     | all job control threads have been joined
[2025-10-11 12:57:52] 2025-10-11 16:57:20,058 | INFO     | all data control threads have been joined
[2025-10-11 12:57:52] 2025-10-11 16:57:20,705 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-11 12:57:52] 2025-10-11 16:57:20,705 | INFO     | aborting loop
[2025-10-11 12:57:52] 2025-10-11 16:57:20,739 | INFO     | all payload control threads have been joined
[2025-10-11 12:57:52] 2025-10-11 16:57:20,934 | INFO     | [job] retrieve thread has finished
[2025-10-11 12:57:52] 2025-10-11 16:57:21,036 | INFO     | [job] control thread has finished
[2025-10-11 12:57:52] 2025-10-11 16:57:21,066 | INFO     | [data] control thread has finished
[2025-10-11 12:57:52] 2025-10-11 16:57:21,136 | INFO     | [payload] validate_post thread has finished
[2025-10-11 12:57:52] 2025-10-11 16:57:21,441 | INFO     | [data] copytool_in thread has finished
[2025-10-11 12:57:52] 2025-10-11 16:57:21,717 | INFO     | [job] job monitor thread has finished
[2025-10-11 12:57:52] 2025-10-11 16:57:21,745 | INFO     | [payload] control thread has finished
[2025-10-11 12:57:52] 2025-10-11 16:57:21,822 | INFO     | [job] create_data_payload thread has finished
[2025-10-11 12:57:52] 2025-10-11 16:57:21,936 | INFO     | [data] copytool_out thread has finished
[2025-10-11 12:57:52] 2025-10-11 16:57:21,942 | INFO     | [payload] execute_payloads thread has finished
[2025-10-11 12:57:52] 2025-10-11 16:57:22,008 | INFO     | [payload] failed_post thread has finished
[2025-10-11 12:57:52] 2025-10-11 16:57:22,069 | INFO     | [job] validate thread has finished
[2025-10-11 12:57:52] 2025-10-11 16:57:22,261 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-11 12:57:52] 2025-10-11 16:57:22,387 | INFO     | [payload] validate_pre thread has finished
[2025-10-11 12:57:52] 2025-10-11 16:57:22,614 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-11 12:57:52] 2025-10-11 16:57:23,620 | INFO     | [job] queue monitor thread has finished
[2025-10-11 12:57:52] 2025-10-11 16:57:26,269 | INFO     | [data] queue_monitor thread has finished
[2025-10-11 12:57:52] 2025-10-11 16:57:30,410 | INFO     | job.realtimelogging is not enabled
[2025-10-11 12:57:52] 2025-10-11 16:57:31,416 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-11 12:57:52] 2025-10-11 16:57:43,277 | INFO     | [monitor] cgroup control has ended
[2025-10-11 12:57:52] 2025-10-11 16:57:44,768 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140049171830592)>', '<ExcThread(monitor, started 140048540362496)>']
[2025-10-11 12:57:52] 2025-10-11 16:57:49,796 | INFO     | all workflow threads have been joined
[2025-10-11 12:57:52] 2025-10-11 16:57:49,796 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-11 12:57:52] 2025-10-11 16:57:49,797 | INFO     | traces error code: 0
[2025-10-11 12:57:52] 2025-10-11 16:57:49,797 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-11 12:57:52] 2025-10-11 16:57:51,201 | INFO     | PID=3990517 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-11 12:57:52] 2025-10-11 16:57:51,205 | INFO     | .. there are 39 such processes running
[2025-10-11 12:57:52] 2025-10-11 16:57:51,206 | INFO     | found 0 job(s) in 20 queues
[2025-10-11 12:57:52] 2025-10-11 16:57:51,206 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-11 12:57:52] 2025-10-11 16:57:51,206 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-11 12:57:52] 2025-10-11 16:57:51,206 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-11 12:57:52] 2025-10-11 16:57:51,207 | INFO     | [monitor] control thread has ended
[2025-10-11 12:57:52] 2025-10-11 16:57:51,396 [wrapper] ==== pilot stdout END ====
[2025-10-11 12:57:52] 2025-10-11 16:57:51,439 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-11 12:57:52] 2025-10-11 16:57:51,461 [wrapper] pilotpid: 3990517
[2025-10-11 12:57:52] 2025-10-11 16:57:51,487 [wrapper] Pilot exit status: 0
[2025-10-11 12:57:52] 2025-10-11 16:57:51,541 [wrapper] pandaids: 6837873738
[2025-10-11 12:57:52] 2025-10-11 16:57:51,626 [wrapper] cleanup supervisor_pilot 2454292 3990518
[2025-10-11 12:57:52] 2025-10-11 16:57:51,629 [wrapper] Test setup, not cleaning
[2025-10-11 12:57:52] 2025-10-11 16:57:51,631 [wrapper] apfmon messages muted
[2025-10-11 12:57:52] 2025-10-11 16:57:51,634 [wrapper] ==== wrapper stdout END ====
[2025-10-11 12:57:52] 2025-10-11 16:57:51,645 [wrapper] ==== wrapper stderr END ====
[2025-10-11 12:57:52]  *** Error codes and diagnostics ***
[2025-10-11 12:57:52]     "exeErrorCode": 0,
[2025-10-11 12:57:52]     "exeErrorDiag": "",
[2025-10-11 12:57:52]     "pilotErrorCode": 0,
[2025-10-11 12:57:52]     "pilotErrorDiag": "",
[2025-10-11 12:57:52]  *** Listing of results directory ***
[2025-10-11 12:57:52] total 424400
[2025-10-11 12:57:52] -rw-r--r--. 1 boincer umatlas    557409 Oct 10 18:56 pilot3.tar.gz
[2025-10-11 12:57:52] -rw-r--r--. 1 boincer umatlas      5112 Oct 10 19:04 queuedata.json
[2025-10-11 12:57:52] -rwx------. 1 boincer umatlas     36292 Oct 10 19:05 runpilot2-wrapper.sh
[2025-10-11 12:57:52] -rw-r--r--. 1 boincer umatlas       100 Oct 11 00:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-11 12:57:52] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 11 00:01 run_atlas
[2025-10-11 12:57:52] -rw-r--r--. 1 boincer umatlas       105 Oct 11 00:01 job.xml
[2025-10-11 12:57:52] -rw-r--r--. 2 boincer umatlas 218528592 Oct 11 00:01 EVNT.46676267._001882.pool.root.1
[2025-10-11 12:57:52] drwxrwx--x. 2 boincer umatlas      4096 Oct 11 00:01 shared
[2025-10-11 12:57:52] -rw-r--r--. 2 boincer umatlas    569681 Oct 11 00:01 input.tar.gz
[2025-10-11 12:57:52] -rw-r--r--. 2 boincer umatlas     15120 Oct 11 00:01 start_atlas.sh
[2025-10-11 12:57:52] -rw-r--r--. 1 boincer umatlas         0 Oct 11 00:01 boinc_lockfile
[2025-10-11 12:57:52] -rw-r--r--. 1 boincer umatlas      2550 Oct 11 00:01 pandaJob.out
[2025-10-11 12:57:52] -rw-------. 1 boincer umatlas    975509 Oct 11 00:03 agis_schedconf.cvmfs.json
[2025-10-11 12:57:52] drwx------. 5 boincer umatlas      4096 Oct 11 00:03 pilot3
[2025-10-11 12:57:52] -rw-r--r--. 1 boincer umatlas      6706 Oct 11 12:45 init_data.xml
[2025-10-11 12:57:52] -rw-------. 1 boincer umatlas 199883196 Oct 11 12:56 HITS.46676269._046590.pool.root.1
[2025-10-11 12:57:52] -rw-r--r--. 1 boincer umatlas       531 Oct 11 12:56 boinc_task_state.xml
[2025-10-11 12:57:52] -rw-------. 1 boincer umatlas      1044 Oct 11 12:56 memory_monitor_summary.json
[2025-10-11 12:57:52] -rw-------. 1 boincer umatlas   1560580 Oct 11 12:57 agis_ddmendpoints.agis.ALL.json
[2025-10-11 12:57:52] -rw-------. 1 boincer umatlas    851493 Oct 11 12:57 log.46676269._046590.job.log.tgz.1
[2025-10-11 12:57:52] -rw-------. 1 boincer umatlas      7823 Oct 11 12:57 heartbeat.json
[2025-10-11 12:57:52] -rw-------. 1 boincer umatlas       823 Oct 11 12:57 pilotlog.txt
[2025-10-11 12:57:52] -rw-------. 1 boincer umatlas        95 Oct 11 12:57 pilot_heartbeat.json
[2025-10-11 12:57:52] -rw-------. 1 boincer umatlas   5285380 Oct 11 12:57 log.46676269._046590.job.log.1
[2025-10-11 12:57:52] -rw-r--r--. 1 boincer umatlas      8192 Oct 11 12:57 boinc_mmap_file
[2025-10-11 12:57:52] -rw-r--r--. 1 boincer umatlas        28 Oct 11 12:57 wrapper_checkpoint.txt
[2025-10-11 12:57:52] -rw-------. 1 boincer umatlas       357 Oct 11 12:57 output.list
[2025-10-11 12:57:52] -rw-r--r--. 1 boincer umatlas       620 Oct 11 12:57 runtime_log
[2025-10-11 12:57:52] -rw-------. 1 boincer umatlas   6154240 Oct 11 12:57 result.tar.gz
[2025-10-11 12:57:52] -rw-r--r--. 1 boincer umatlas      8689 Oct 11 12:57 runtime_log.err
[2025-10-11 12:57:52] -rw-------. 1 boincer umatlas       654 Oct 11 12:57 cHHKDmHMbR8n9Rq4apOajLDm4fhM0noT9bVof3QYDm7kQMDmanDNUo.diag
[2025-10-11 12:57:52] -rw-r--r--. 1 boincer umatlas     21207 Oct 11 12:57 stderr.txt
[2025-10-11 12:57:52] HITS file was successfully produced:
[2025-10-11 12:57:52] -rw-------. 1 boincer umatlas 199883196 Oct 11 12:56 shared/HITS.pool.root.1
[2025-10-11 12:57:52]  *** Contents of shared directory: ***
[2025-10-11 12:57:52] total 415204
[2025-10-11 12:57:52] -rw-r--r--. 2 boincer umatlas 218528592 Oct 11 00:01 ATLAS.root_0
[2025-10-11 12:57:52] -rw-r--r--. 2 boincer umatlas    569681 Oct 11 00:01 input.tar.gz
[2025-10-11 12:57:52] -rw-r--r--. 2 boincer umatlas     15120 Oct 11 00:01 start_atlas.sh
[2025-10-11 12:57:52] -rw-------. 1 boincer umatlas 199883196 Oct 11 12:56 HITS.pool.root.1
[2025-10-11 12:57:52] -rw-------. 1 boincer umatlas   6154240 Oct 11 12:57 result.tar.gz
12:57:53 (3982398): run_atlas exited; CPU time 56089.927201
12:57:53 (3982398): called boinc_finish(0)

</stderr_txt>
]]>

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