Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:02:54 (723857): wrapper (7.7.26015): starting
00:02:54 (723857): wrapper: running run_atlas (--nthreads 9)
[2025-10-11 00:02:54] Arguments: --nthreads 9
[2025-10-11 00:02:54] Threads: 9
[2025-10-11 00:02:54] Checking for CVMFS
[2025-10-11 00:02:55] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 00:02:56] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 00:02:56] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 00:02:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 00:02:58] 2.13.2.0 1056763 127317 285792 151571 1 153 24891431 32935936 27370 16776704 0 98800171 99.637 92114475 27735 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-11 00:02:58] CVMFS is ok
[2025-10-11 00:02:58] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 00:02:58] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 00:02:58] Further information can be found at the LHC@home message board.
[2025-10-11 00:02:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 00:02:58] Checking for apptainer binary...
[2025-10-11 00:02:58] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 00:02:58] Running /usr/bin/apptainer --version
[2025-10-11 00:02:58] apptainer version 1.4.3-1.el9
[2025-10-11 00:02:58] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 00:02:59] c-4-39.aglt2.org
[2025-10-11 00:02:59] apptainer works
[2025-10-11 00:02:59] Set ATHENA_PROC_NUMBER=9
[2025-10-11 00:02:59] Set ATHENA_CORE_NUMBER=9
[2025-10-11 00:03:00] Starting ATLAS job with PandaID=6837732058
[2025-10-11 00:03:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-11 23:16:30]  *** The last 200 lines of the pilot log: ***
[2025-10-11 23:16:30] 2025-10-12 03:15:52,780 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2600.1804249999977
[2025-10-11 23:16:30] 2025-10-12 03:15:52,792 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6837732058/memory_monitor_summary.json (trf name=prmon)
[2025-10-11 23:16:30] 2025-10-12 03:15:52,793 | INFO     | extracted standard info from prmon json
[2025-10-11 23:16:30] 2025-10-12 03:15:52,793 | INFO     | extracted standard memory fields from prmon json
[2025-10-11 23:16:30] 2025-10-12 03:15:52,793 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-11 23:16:30] 2025-10-12 03:15:52,793 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-11 23:16:30] 2025-10-12 03:15:52,793 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-11 23:16:30] 2025-10-12 03:15:52,814 | INFO     | fitting pss+swap vs Time
[2025-10-11 23:16:30] 2025-10-12 03:15:52,816 | INFO     | sum of square deviations: 790363043173.2571
[2025-10-11 23:16:30] 2025-10-12 03:15:52,883 | INFO     | sum of deviations: 1992596062489.3096
[2025-10-11 23:16:30] 2025-10-12 03:15:52,883 | INFO     | mean x: 1760197273.829429
[2025-10-11 23:16:30] 2025-10-12 03:15:52,884 | INFO     | mean y: 2154984.5893118596
[2025-10-11 23:16:30] 2025-10-12 03:15:52,884 | INFO     | -- intersect: -4435504629.345953
[2025-10-11 23:16:30] 2025-10-12 03:15:52,884 | INFO     | intersect: -4435504629.345953
[2025-10-11 23:16:30] 2025-10-12 03:15:52,886 | INFO     | chi2: 10.481601752799637
[2025-10-11 23:16:30] 2025-10-12 03:15:52,888 | INFO     | sum of square deviations: 781715716874.5326
[2025-10-11 23:16:30] 2025-10-12 03:15:53,096 | INFO     | monitor loop #3368: job 0:6837732058 is in state 'finished'
[2025-10-11 23:16:30] 2025-10-12 03:15:53,102 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 23:16:30] 2025-10-12 03:15:53,115 | INFO     | sum of deviations: 2091798020939.5957
[2025-10-11 23:16:30] 2025-10-12 03:15:53,116 | INFO     | mean x: 1760197121.3291698
[2025-10-11 23:16:30] 2025-10-12 03:15:53,116 | INFO     | mean y: 2156729.516531962
[2025-10-11 23:16:30] 2025-10-12 03:15:53,116 | INFO     | -- intersect: -4707965857.734579
[2025-10-11 23:16:30] 2025-10-12 03:15:53,116 | INFO     | intersect: -4707965857.734579
[2025-10-11 23:16:30] 2025-10-12 03:15:53,118 | INFO     | chi2: 9.716783183292735
[2025-10-11 23:16:30] 2025-10-12 03:15:53,118 | INFO     | current chi2=9.716783183292735 (change=7.29677188224232 %)
[2025-10-11 23:16:30] 2025-10-12 03:15:53,118 | INFO     | right removable region: 1360
[2025-10-11 23:16:30] 2025-10-12 03:15:53,120 | INFO     | sum of square deviations: 781715608905.2128
[2025-10-11 23:16:30] 2025-10-12 03:15:53,215 | INFO     | sum of deviations: 1631685104434.2705
[2025-10-11 23:16:30] 2025-10-12 03:15:53,215 | INFO     | mean x: 1760197426.3306391
[2025-10-11 23:16:30] 2025-10-12 03:15:53,215 | INFO     | mean y: 2161347.346069067
[2025-10-11 23:16:30] 2025-10-12 03:15:53,215 | INFO     | -- intersect: -3671921514.36061
[2025-10-11 23:16:30] 2025-10-12 03:15:53,216 | INFO     | intersect: -3671921514.36061
[2025-10-11 23:16:30] 2025-10-12 03:15:53,217 | INFO     | chi2: 7.100487626377581
[2025-10-11 23:16:30] 2025-10-12 03:15:53,218 | INFO     | current chi2=7.100487626377581 (change=32.257609153285756 %)
[2025-10-11 23:16:30] 2025-10-12 03:15:53,219 | INFO     | sum of square deviations: 773131561048.3263
[2025-10-11 23:16:30] 2025-10-12 03:15:53,292 | INFO     | sum of deviations: 1389275365629.688
[2025-10-11 23:16:30] 2025-10-12 03:15:53,293 | INFO     | mean x: 1760197578.831121
[2025-10-11 23:16:30] 2025-10-12 03:15:53,293 | INFO     | mean y: 2165653.0073746312
[2025-10-11 23:16:30] 2025-10-12 03:15:53,293 | INFO     | -- intersect: -3160813661.399688
[2025-10-11 23:16:30] 2025-10-12 03:15:53,293 | INFO     | intersect: -3160813661.399688
[2025-10-11 23:16:30] 2025-10-12 03:15:53,295 | INFO     | chi2: 5.658367157401506
[2025-10-11 23:16:30] 2025-10-12 03:15:53,295 | INFO     | current chi2=5.658367157401506 (change=20.3101610038548 %)
[2025-10-11 23:16:30] 2025-10-12 03:15:53,295 | INFO     | left removable region: 20
[2025-10-11 23:16:30] 2025-10-12 03:15:53,297 | INFO     | sum of square deviations: 746085199387.2201
[2025-10-11 23:16:30] 2025-10-12 03:15:53,386 | INFO     | sum of deviations: 1127371686003.8252
[2025-10-11 23:16:30] 2025-10-12 03:15:53,386 | INFO     | mean x: 1760197700.8320897
[2025-10-11 23:16:30] 2025-10-12 03:15:53,386 | INFO     | mean y: 2173955.9947761195
[2025-10-11 23:16:30] 2025-10-12 03:15:53,387 | INFO     | -- intersect: -2657571943.4239073
[2025-10-11 23:16:30] 2025-10-12 03:15:53,387 | INFO     | intersect: -2657571943.4239073
[2025-10-11 23:16:30] 2025-10-12 03:15:53,388 | INFO     | chi2: 3.336939497350763
[2025-10-11 23:16:30] 2025-10-12 03:15:53,388 | INFO     | -- intersect: -2657571943.4239073
[2025-10-11 23:16:30] 2025-10-12 03:15:53,389 | INFO     | current memory leak: 1.51 B/s (using 1340 data points, chi2=3.34)
[2025-10-11 23:16:30] 2025-10-12 03:15:53,390 | INFO     | could have reported an average CPU frequency of 2600 MHz (48 samples)
[2025-10-11 23:16:30] 2025-10-12 03:15:53,390 | INFO     | ..............................
[2025-10-11 23:16:30] 2025-10-12 03:15:53,390 | INFO     | . Timing measurements:
[2025-10-11 23:16:30] 2025-10-12 03:15:53,390 | INFO     | . get job = 0 s
[2025-10-11 23:16:30] 2025-10-12 03:15:53,390 | INFO     | . initial setup = 8 s
[2025-10-11 23:16:30] 2025-10-12 03:15:53,390 | INFO     | . payload setup = 58 s
[2025-10-11 23:16:30] 2025-10-12 03:15:53,391 | INFO     | . stage-in = 0 s
[2025-10-11 23:16:30] 2025-10-12 03:15:53,391 | INFO     | . payload execution = 83332 s
[2025-10-11 23:16:30] 2025-10-12 03:15:53,391 | INFO     | . stage-out = 4 s
[2025-10-11 23:16:30] 2025-10-12 03:15:53,391 | INFO     | . log creation = 0 s
[2025-10-11 23:16:30] 2025-10-12 03:15:53,391 | INFO     | ..............................
[2025-10-11 23:16:30] 2025-10-12 03:15:53,559 | INFO     | PID=734505 has CPU usage=6.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-11 23:16:30] 2025-10-12 03:15:53,559 | INFO     | .. there are 40 such processes running
[2025-10-11 23:16:30] 2025-10-12 03:15:53,572 | INFO     | 
[2025-10-11 23:16:30] 2025-10-12 03:15:53,572 | INFO     | job summary report
[2025-10-11 23:16:30] 2025-10-12 03:15:53,572 | INFO     | --------------------------------------------------
[2025-10-11 23:16:30] 2025-10-12 03:15:53,572 | INFO     | PanDA job id: 6837732058
[2025-10-11 23:16:30] 2025-10-12 03:15:53,572 | INFO     | task id: 46676269
[2025-10-11 23:16:30] 2025-10-12 03:15:53,573 | INFO     | errors: (none)
[2025-10-11 23:16:30] 2025-10-12 03:15:53,573 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-11 23:16:30] 2025-10-12 03:15:53,573 | INFO     | pilot state: finished 
[2025-10-11 23:16:30] 2025-10-12 03:15:53,573 | INFO     | transexitcode: 0
[2025-10-11 23:16:30] 2025-10-12 03:15:53,573 | INFO     | exeerrorcode: 0
[2025-10-11 23:16:30] 2025-10-12 03:15:53,573 | INFO     | exeerrordiag: 
[2025-10-11 23:16:30] 2025-10-12 03:15:53,573 | INFO     | exitcode: 0
[2025-10-11 23:16:30] 2025-10-12 03:15:53,573 | INFO     | exitmsg: OK
[2025-10-11 23:16:30] 2025-10-12 03:15:53,573 | INFO     | cpuconsumptiontime: 52613 s
[2025-10-11 23:16:30] 2025-10-12 03:15:53,573 | INFO     | nevents: 400
[2025-10-11 23:16:30] 2025-10-12 03:15:53,574 | INFO     | neventsw: 0
[2025-10-11 23:16:30] 2025-10-12 03:15:53,574 | INFO     | pid: 764201
[2025-10-11 23:16:30] 2025-10-12 03:15:53,574 | INFO     | pgrp: 764201
[2025-10-11 23:16:30] 2025-10-12 03:15:53,574 | INFO     | corecount: 9
[2025-10-11 23:16:30] 2025-10-12 03:15:53,574 | INFO     | event service: False
[2025-10-11 23:16:30] 2025-10-12 03:15:53,574 | INFO     | sizes: {0: 2348686, 2: 2348885, 3: 2348913, 14: 2348913, 25: 2348941, 34: 2349231, 36: 2349387, 83392: 2408137, 83393: 2408136, 83398: 2417218, 83400: 2417274, 834
[2025-10-11 23:16:30] 2025-10-12 03:15:53,574 | INFO     | --------------------------------------------------
[2025-10-11 23:16:30] 2025-10-12 03:15:53,574 | INFO     | 
[2025-10-11 23:16:30] 2025-10-12 03:15:53,574 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-10-11 23:16:30] 2025-10-12 03:15:53,712 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-11 23:16:30] 2025-10-12 03:15:53,713 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-11 23:16:30] 2025-10-12 03:15:53,713 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-11 23:16:30] 2025-10-12 03:15:53,713 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-11 23:16:30] 2025-10-12 03:15:53,713 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-11 23:16:30] 2025-10-12 03:15:53,713 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-11 23:16:30] 2025-10-12 03:15:53,713 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-11 23:16:30] 2025-10-12 03:15:53,713 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-11 23:16:30] 2025-10-12 03:15:53,713 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-11 23:16:30] 2025-10-12 03:15:53,713 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-11 23:16:30] 2025-10-12 03:15:53,714 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-11 23:16:30] 2025-10-12 03:15:53,714 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-11 23:16:30] 2025-10-12 03:15:53,714 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-11 23:16:30] 2025-10-12 03:15:53,714 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-11 23:16:30] 2025-10-12 03:15:53,714 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-11 23:16:30] 2025-10-12 03:15:53,714 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-11 23:16:30] 2025-10-12 03:15:53,714 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-11 23:16:30] 2025-10-12 03:15:53,714 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-11 23:16:30] 2025-10-12 03:15:53,714 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-11 23:16:30] 2025-10-12 03:15:53,715 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-11 23:16:30] 2025-10-12 03:15:53,715 | INFO     | job 6837732058 has completed (purged errors)
[2025-10-11 23:16:30] 2025-10-12 03:15:53,715 | INFO     | overall cleanup function is called
[2025-10-11 23:16:30] 2025-10-12 03:15:54,736 | INFO     | --- collectZombieJob: --- 10, [764201]
[2025-10-11 23:16:30] 2025-10-12 03:15:54,736 | INFO     | zombie collector waiting for pid 764201
[2025-10-11 23:16:30] 2025-10-12 03:15:54,736 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-11 23:16:30] 2025-10-12 03:15:54,736 | INFO     | collected zombie processes
[2025-10-11 23:16:30] 2025-10-12 03:15:54,737 | INFO     | will attempt to kill all subprocesses of pid=764201
[2025-10-11 23:16:30] 2025-10-12 03:15:55,669 | INFO     | process IDs to be killed: [764201] (in reverse order)
[2025-10-11 23:16:30] 2025-10-12 03:15:55,980 | WARNING  | found no corresponding commands to process id(s)
[2025-10-11 23:16:30] 2025-10-12 03:15:55,989 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-11 23:16:30] 2025-10-12 03:15:56,187 | INFO     | did not find any defunct processes belonging to 764201
[2025-10-11 23:16:30] 2025-10-12 03:15:56,291 | INFO     | did not find any defunct processes belonging to 764201
[2025-10-11 23:16:30] 2025-10-12 03:15:56,291 | INFO     | ready for new job
[2025-10-11 23:16:30] 2025-10-12 03:15:56,292 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-11 23:16:30] 2025-10-12 03:15:56,296 | INFO     | ***************************************
[2025-10-11 23:16:30] 2025-10-12 03:15:56,296 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-11 23:16:30] 2025-10-12 03:15:56,297 | INFO     | ***************************************
[2025-10-11 23:16:30] 2025-10-12 03:15:56,297 | INFO     | 
[2025-10-11 23:16:30] 2025-10-12 03:15:56,313 | INFO     | architecture information:
[2025-10-11 23:16:30] 2025-10-12 03:15:56,325 | INFO     | executing command: cat /etc/os-release
[2025-10-11 23:16:30] 2025-10-12 03:15:56,386 | INFO     | cat /etc/os-release:
[2025-10-11 23:16:30] NAME="CentOS Linux"
[2025-10-11 23:16:30] VERSION="7 (Core)"
[2025-10-11 23:16:30] ID="centos"
[2025-10-11 23:16:30] ID_LIKE="rhel fedora"
[2025-10-11 23:16:30] VERSION_ID="7"
[2025-10-11 23:16:30] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-11 23:16:30] ANSI_COLOR="0;31"
[2025-10-11 23:16:30] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-11 23:16:30] HOME_URL="https://www.centos.org/"
[2025-10-11 23:16:30] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-11 23:16:30] 
[2025-10-11 23:16:30] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-11 23:16:30] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-11 23:16:30] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-11 23:16:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-11 23:16:30] 
[2025-10-11 23:16:30] 2025-10-12 03:15:56,386 | INFO     | ***************************************
[2025-10-11 23:16:30] 2025-10-12 03:15:56,893 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-10-11 23:16:30] 2025-10-12 03:15:56,941 | INFO     | sufficient remaining disk space (75655806976 B)
[2025-10-11 23:16:30] 2025-10-12 03:15:56,942 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-11 23:16:30] 2025-10-12 03:15:56,942 | INFO     | current server update state: UPDATING_FINAL
[2025-10-11 23:16:30] 2025-10-12 03:15:56,942 | INFO     | update_server=False
[2025-10-11 23:16:30] 2025-10-12 03:15:56,942 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-11 23:16:30] 2025-10-12 03:15:56,943 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-11 23:16:30] 2025-10-12 03:15:56,947 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-11 23:16:30] 2025-10-12 03:15:56,947 | INFO     | aborting loop
[2025-10-11 23:16:30] 2025-10-12 03:15:56,949 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-11 23:16:30] 2025-10-12 03:15:57,020 | INFO     | all data control threads have been joined
[2025-10-11 23:16:30] 2025-10-12 03:15:57,880 | INFO     | all payload control threads have been joined
[2025-10-11 23:16:30] 2025-10-12 03:15:57,948 | INFO     | [job] retrieve thread has finished
[2025-10-11 23:16:30] 2025-10-12 03:15:57,953 | INFO     | [job] job monitor thread has finished
[2025-10-11 23:16:30] 2025-10-12 03:15:58,034 | INFO     | [data] control thread has finished
[2025-10-11 23:16:30] 2025-10-12 03:15:58,152 | INFO     | [data] copytool_in thread has finished
[2025-10-11 23:16:30] 2025-10-12 03:15:58,192 | INFO     | all job control threads have been joined
[2025-10-11 23:16:30] 2025-10-12 03:15:58,574 | INFO     | [payload] validate_post thread has finished
[2025-10-11 23:16:30] 2025-10-12 03:15:58,590 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-11 23:16:30] 2025-10-12 03:15:58,708 | INFO     | [job] create_data_payload thread has finished
[2025-10-11 23:16:30] 2025-10-12 03:15:58,709 | INFO     | [payload] execute_payloads thread has finished
[2025-10-11 23:16:30] 2025-10-12 03:15:58,886 | INFO     | [payload] control thread has finished
[2025-10-11 23:16:30] 2025-10-12 03:15:58,956 | INFO     | [data] copytool_out thread has finished
[2025-10-11 23:16:30] 2025-10-12 03:15:59,058 | INFO     | [payload] failed_post thread has finished
[2025-10-11 23:16:30] 2025-10-12 03:15:59,158 | INFO     | [job] validate thread has finished
[2025-10-11 23:16:30] 2025-10-12 03:15:59,214 | INFO     | [job] control thread has finished
[2025-10-11 23:16:30] 2025-10-12 03:15:59,256 | INFO     | [payload] validate_pre thread has finished
[2025-10-11 23:16:30] 2025-10-12 03:15:59,337 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-11 23:16:30] 2025-10-12 03:15:59,598 | INFO     | [job] queue monitor thread has finished
[2025-10-11 23:16:30] 2025-10-12 03:16:00,954 | INFO     | [data] queue_monitor thread has finished
[2025-10-11 23:16:30] 2025-10-12 03:16:23,208 | INFO     | [monitor] cgroup control has ended
[2025-10-11 23:16:30] 2025-10-12 03:16:23,512 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140071617742656)>', '<ExcThread(monitor, started 140070820505344)>']
[2025-10-11 23:16:30] 2025-10-12 03:16:26,778 | INFO     | PID=734505 has CPU usage=4.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-11 23:16:30] 2025-10-12 03:16:26,778 | INFO     | .. there are 39 such processes running
[2025-10-11 23:16:30] 2025-10-12 03:16:26,780 | INFO     | found 0 job(s) in 20 queues
[2025-10-11 23:16:30] 2025-10-12 03:16:26,780 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-11 23:16:30] 2025-10-12 03:16:26,780 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-11 23:16:30] 2025-10-12 03:16:26,780 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-11 23:16:30] 2025-10-12 03:16:26,780 | INFO     | [monitor] control thread has ended
[2025-10-11 23:16:30] 2025-10-12 03:16:28,538 | INFO     | all workflow threads have been joined
[2025-10-11 23:16:30] 2025-10-12 03:16:28,538 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-11 23:16:30] 2025-10-12 03:16:28,539 | INFO     | traces error code: 0
[2025-10-11 23:16:30] 2025-10-12 03:16:28,539 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-11 23:16:30] 2025-10-12 03:16:29,011 [wrapper] ==== pilot stdout END ====
[2025-10-11 23:16:30] 2025-10-12 03:16:29,039 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-11 23:16:30] 2025-10-12 03:16:29,077 [wrapper] pilotpid: 734505
[2025-10-11 23:16:30] 2025-10-12 03:16:29,102 [wrapper] Pilot exit status: 0
[2025-10-11 23:16:30] 2025-10-12 03:16:29,197 [wrapper] pandaids: 6837732058
[2025-10-11 23:16:30] 2025-10-12 03:16:29,438 [wrapper] cleanup supervisor_pilot  670072 734506
[2025-10-11 23:16:30] 2025-10-12 03:16:29,471 [wrapper] Test setup, not cleaning
[2025-10-11 23:16:30] 2025-10-12 03:16:29,493 [wrapper] apfmon messages muted
[2025-10-11 23:16:30] 2025-10-12 03:16:29,499 [wrapper] ==== wrapper stdout END ====
[2025-10-11 23:16:30] 2025-10-12 03:16:29,556 [wrapper] ==== wrapper stderr END ====
[2025-10-11 23:16:30]  *** Error codes and diagnostics ***
[2025-10-11 23:16:30]     "exeErrorCode": 0,
[2025-10-11 23:16:30]     "exeErrorDiag": "",
[2025-10-11 23:16:30]     "pilotErrorCode": 0,
[2025-10-11 23:16:30]     "pilotErrorDiag": "",
[2025-10-11 23:16:30]  *** Listing of results directory ***
[2025-10-11 23:16:30] total 427780
[2025-10-11 23:16:30] -rwx------. 1 boincer umatlas     36292 Oct 10 15:52 runpilot2-wrapper.sh
[2025-10-11 23:16:30] -rw-r--r--. 1 boincer umatlas      5112 Oct 10 15:52 queuedata.json
[2025-10-11 23:16:30] -rw-r--r--. 1 boincer umatlas    557409 Oct 10 15:52 pilot3.tar.gz
[2025-10-11 23:16:30] -rw-r--r--. 1 boincer umatlas       100 Oct 11 00:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-11 23:16:30] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 11 00:02 run_atlas
[2025-10-11 23:16:30] -rw-r--r--. 1 boincer umatlas       105 Oct 11 00:02 job.xml
[2025-10-11 23:16:30] -rw-r--r--. 2 boincer umatlas 219549908 Oct 11 00:02 EVNT.46676267._001796.pool.root.1
[2025-10-11 23:16:30] -rw-r--r--. 2 boincer umatlas     15120 Oct 11 00:02 start_atlas.sh
[2025-10-11 23:16:30] drwxrwx--x. 2 boincer umatlas      4096 Oct 11 00:02 shared
[2025-10-11 23:16:30] -rw-r--r--. 2 boincer umatlas    569670 Oct 11 00:02 input.tar.gz
[2025-10-11 23:16:30] -rw-r--r--. 1 boincer umatlas         0 Oct 11 00:02 boinc_lockfile
[2025-10-11 23:16:30] -rw-r--r--. 1 boincer umatlas      2550 Oct 11 00:02 pandaJob.out
[2025-10-11 23:16:30] -rw-------. 1 boincer umatlas    975509 Oct 11 00:04 agis_schedconf.cvmfs.json
[2025-10-11 23:16:30] drwx------. 5 boincer umatlas      4096 Oct 11 00:04 pilot3
[2025-10-11 23:16:30] -rw-r--r--. 1 boincer umatlas      6657 Oct 11 23:12 init_data.xml
[2025-10-11 23:16:30] -rw-------. 1 boincer umatlas 196135870 Oct 11 23:14 HITS.46676269._044372.pool.root.1
[2025-10-11 23:16:30] -rw-r--r--. 1 boincer umatlas       530 Oct 11 23:14 boinc_task_state.xml
[2025-10-11 23:16:30] -rw-------. 1 boincer umatlas      1052 Oct 11 23:15 memory_monitor_summary.json
[2025-10-11 23:16:30] -rw-------. 1 boincer umatlas   1560580 Oct 11 23:15 agis_ddmendpoints.agis.ALL.json
[2025-10-11 23:16:30] -rw-------. 1 boincer umatlas   1180643 Oct 11 23:15 log.46676269._044372.job.log.tgz.1
[2025-10-11 23:16:30] -rw-------. 1 boincer umatlas      7844 Oct 11 23:15 heartbeat.json
[2025-10-11 23:16:30] -rw-------. 1 boincer umatlas        95 Oct 11 23:16 pilot_heartbeat.json
[2025-10-11 23:16:30] -rw-r--r--. 1 boincer umatlas      8192 Oct 11 23:16 boinc_mmap_file
[2025-10-11 23:16:30] -rw-r--r--. 1 boincer umatlas        27 Oct 11 23:16 wrapper_checkpoint.txt
[2025-10-11 23:16:30] -rw-------. 1 boincer umatlas      4823 Oct 11 23:16 pilotlog.txt
[2025-10-11 23:16:30] -rw-------. 1 boincer umatlas   8043557 Oct 11 23:16 log.46676269._044372.job.log.1
[2025-10-11 23:16:30] -rw-------. 1 boincer umatlas       357 Oct 11 23:16 output.list
[2025-10-11 23:16:30] -rw-r--r--. 1 boincer umatlas       620 Oct 11 23:16 runtime_log
[2025-10-11 23:16:30] -rw-------. 1 boincer umatlas   9246720 Oct 11 23:16 result.tar.gz
[2025-10-11 23:16:30] -rw-r--r--. 1 boincer umatlas      8694 Oct 11 23:16 runtime_log.err
[2025-10-11 23:16:30] -rw-------. 1 boincer umatlas       658 Oct 11 23:16 KQzNDm6KYR8n9Rq4apOajLDm4fhM0noT9bVof3QYDmmUQMDmZ3EWvn.diag
[2025-10-11 23:16:30] -rw-r--r--. 1 boincer umatlas     21339 Oct 11 23:16 stderr.txt
[2025-10-11 23:16:30] HITS file was successfully produced:
[2025-10-11 23:16:30] -rw-------. 1 boincer umatlas 196135870 Oct 11 23:14 shared/HITS.pool.root.1
[2025-10-11 23:16:30]  *** Contents of shared directory: ***
[2025-10-11 23:16:30] total 415564
[2025-10-11 23:16:30] -rw-r--r--. 2 boincer umatlas 219549908 Oct 11 00:02 ATLAS.root_0
[2025-10-11 23:16:30] -rw-r--r--. 2 boincer umatlas     15120 Oct 11 00:02 start_atlas.sh
[2025-10-11 23:16:30] -rw-r--r--. 2 boincer umatlas    569670 Oct 11 00:02 input.tar.gz
[2025-10-11 23:16:30] -rw-------. 1 boincer umatlas 196135870 Oct 11 23:14 HITS.pool.root.1
[2025-10-11 23:16:30] -rw-------. 1 boincer umatlas   9246720 Oct 11 23:16 result.tar.gz
23:16:31 (723857): run_atlas exited; CPU time 55812.132185
23:16:31 (723857): called boinc_finish(0)

</stderr_txt>
]]>

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